ViewGene
Locus Name:
GeneID:
Location:

GeneID:649
TrivialName: PA14_66380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66380
PAO1 Ortholog Locus:PA5021
Sequence Length:1617
Protein Length:538
Start: 5919211
Stop: 5920827
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08406.1|AE004915_1 (AE004915) probable sodium/hydrogen antiporter [Pseudomonas aeruginosa PAO1]
Identities = 536/538 (99%), Positives = 537/538 (99%)
Sequence:
ATGATCGCCGGCAACGATGGGGTCGGCGGCATCGTCTTCGACAACTATCCGGTGGCCTACCTGGTGGGCAAC
CTGGCGCTCGCCGTGATCCTCCTCGACGGCGGCCTGCGCACCCGCGTCTCCAGCTTCCGCGTGGCGCTCTGG
CCGGCATTGTCGCTGGCCACCCTGGGCGTGTTGGTGACCACCGGCCTGACCGGCATCGCGGCGGCCTGGCTG
TTCGACCTGCACTGGATGGAAGGCCTGCTGATCGGCGCCATCGTCGGCTCCACCGACGCCGCCGCGGTGTTC
TCCCTGCTCGGCGGCAAAGGTCTCAACGAGCGGGTCACCGCGACCCTGGAGATCGAATCGGGCAGCAACGAC
CCGATGGCGGTATTCCTCACCGTGACCCTGATCGAGATGCTCGCCAGCGGCCAGACCGGCCTCAGCTGGGGC
TTCGTCCTGCACCTGGTGCAGCAGTTCGGTCTCGGCGCCCTGCTCGGTCTCGGCGGCGGCTGGTTGCTGCTG
CAACTGATCAACCGCATGCACCTGGCCGGCGGCCTCTACCCGCTGCTGGTGATCAGCGGCGGCCTGCTGGTG
TTCGCCCTGGCCAACGCCGTCGGCGGCAGCGGCATCCTGGCCATCTACCTGTGCGGCCTGCTCCTCGGCAAC
CGCCCGATCCGCAGCCGCCACGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCGCAGATCGGCATG
TTCCTGGTCCTCGGCCTGCTGGTCACCCCCCACGACCTGTGGCCGATCGCCCTGCCGGCGCTGGCCCTGGCG
CTGTGGATGATCCTGGTGGCGCGGCCGCTGTCGGTGCTGATCGGACTGATCCCGTTCCGCGCCTTCCACGAC
CGCGAGAAGGCCTTCATCGCCTGGGTCGGCCTGCGCGGCGCGGTGCCGATCATCCTCGCGGTGTTCCCGCTG
ATGGCCGGCCTGCCGAACGCCCAGCTGTTCTTCAACGTGGCCTTCTTCATCGTCCTGGTCTCGCTGCTGGTG
CAGGGCACCAGCCTGCCCTGGGCGGCCAGGCTGCTGCGGGTGGTGGTGCCGCCGGACCCGGCACCGATATCC
CGCGCCGGCCTGGAGATCCACCCGACCAGCGAGTGGGAGCTGTTCGTCTACCACCTGAACAAGGAAAAGTGG
TGCATCGGCGCCGCCCTGCGCGAGCTGAAGATGCCCGGCGGGACCCGGATCGCCGCGCTGTTCCGCGGCACC
GAACTGCTCCACCCGTCGGGCAGCACCATCCTCGAGGCCGACGACATCCTCTGCGTGATCGGCCACGAACAC
GACCTGCCGGCCCTCGGCAAGCTGTTCAGCCAGGCGCCCGACCGCGGCCTCGGCGCGCGCTTCTTCGGCGAC
TTCGTGCTGGAAGGCGATGCCCAGCTGTCGGCGGTGGCCTCGCTCTACGGCCTGAAGCTCGACGGCATCGAC
GGCGAGCAAGCGCTGGGCCGCTTCATCGCCCACGAGATCGGCGGCGAAGCGGTGATCGGCGACCAGGTGGAG
TGGAACGGCCTGACCTGGACCGTGGCCGCCCTGGAAGGCAACCGTATCCGCAAGGTCGGCGTGAAGTTTCCG
GAAGGCCGCCCAGGGCCCGGACTTTTCCTCTGA
Translation:
MIAGNDGVGGIVFDNYPVAYLVGNLALAVILLDGGLRTRVSSFRVALWPALSLATLGVLVTTGLTGIAAAWL
FDLHWMEGLLIGAIVGSTDAAAVFSLLGGKGLNERVTATLEIESGSNDPMAVFLTVTLIEMLASGQTGLSWG
FVLHLVQQFGLGALLGLGGGWLLLQLINRMHLAGGLYPLLVISGGLLVFALANAVGGSGILAIYLCGLLLGN
RPIRSRHGILHMLDGMAWLAQIGMFLVLGLLVTPHDLWPIALPALALALWMILVARPLSVLIGLIPFRAFHD
REKAFIAWVGLRGAVPIILAVFPLMAGLPNAQLFFNVAFFIVLVSLLVQGTSLPWAARLLRVVVPPDPAPIS
RAGLEIHPTSEWELFVYHLNKEKWCIGAALRELKMPGGTRIAALFRGTELLHPSGSTILEADDILCVIGHEH
DLPALGKLFSQAPDRGLGARFFGDFVLEGDAQLSAVASLYGLKLDGIDGEQALGRFIAHEIGGEAVIGDQVE
WNGLTWTVAALEGNRIRKVGVKFPEGRPGPGLFL*
AnnotationID:658GeneID:649
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 12:12:37
Gene Name:
Confidence Code:3
GeneProduct:putative sodium/hydrogen antiporter
Cell Localization:()
Synonyms:ycgO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3263
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58451.1| (AE016874) sodium/hydrogen exchanger family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 598

 Score =  886 bits (2290), Expect = 0.0
 Identities = 438/539 (81%), Positives = 487/539 (90%), Gaps = 2/539 (0%)

>gb|AAN70631.1|AE016707_1 (AE016793) sodium/hydrogen exchanger family protein [Pseudomonas
           putida KT2440]
          Length = 597

 Score =  879 bits (2270), Expect = 0.0
 Identities = 428/539 (79%), Positives = 491/539 (91%), Gaps = 2/539 (0%)

>gb|AAL20716.1| (AE008780) putative CPA1 family Na:H transport protein [Salmonella
           typhimurium LT2]
          Length = 577

 Score =  736 bits (1900), Expect = 0.0
 Identities = 364/531 (68%), Positives = 434/531 (81%), Gaps = 2/531 (0%)








 
Structural Features:
COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters 
with a unique C-terminal domain 
[Inorganic ion transport and metabolism]
CD-Length = 574 residues,  92.9% aligned
Score =  743 bits (1920), Expect = 0.0
Identities = 366/534 (68%), Positives = 436/534 (81%), Gaps = 1/534 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1301




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18443




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35042




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:649_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:649
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1100
                           PA5021_tr
                           translation of PA5021
                           538
                           99.62
                           99.81
                           0
                           2755.0
     

     
     
41734
                           gb|AAG08406.1|AE004915_1
                           (AE004915) probable sodium/hydrogen antiporter [Pseudomonas aeruginosa PAO1]
                           538
                           99.62
                           99.81
                           0
                           2755.0
     

     
     
41735
                           gb|AAO58451.1|
                           (AE016874) sodium/hydrogen exchanger family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           599
                           73.12
                           81.30
                           62
                           2294.0
     

     
     
41736
                           gb|AAN70631.1|AE016707_1
                           (AE016793) sodium/hydrogen exchanger family protein [Pseudomonas putida KT2440]
                           598
                           71.57
                           82.10
                           61
                           2274.0
     

     
     
41743
                           dbj|BAB35109.1|
                           (AP002555) hypothetical protein [Escherichia coli O157:H7]
                           541
                           67.09
                           79.85
                           8
                           1861.0
     

     






      

          
GC ORFID: 43651How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5021Glimmer Score: 

          
Start: 5182894Stop: 5184510

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5021 translation of PA5021Homolog Bit Score 1065.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3702 (ORF: BLASTX 952.0), t_PA5021 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGCCGGCAACGATGGGGTCGGCGGCATCGTCTTCGACAACTATCCGGTGGCCTACCTGGTGGGCAAC 
CTGGCGCTCGCCGTGATCCTCCTCGACGGCGGCCTGCGCACCCGCGTCTCCAGCTTCCGCGTGGCGCTCTGG 
CCGGCATTGTCGCTGGCCACCCTGGGCGTGTTGGTGACCACCGGCCTGACCGGCATCGCGGCGGCCTGGCTG 
TTCGACCTGCACTGGATGGAAGGCCTGCTGATCGGCGCCATCGTCGGCTCCACCGACGCCGCCGCGGTGTTC 
TCCCTGCTCGGCGGCAAAGGTCTCAACGAGCGGGTCACCGCGACCCTGGAGATCGAATCGGGCAGCAACGAC 
CCGATGGCGGTATTCCTCACCGTGACCCTGATCGAGATGCTCGCCAGCGGCCAGACCGGCCTCAGCTGGGGC 
TTCGTCCTGCACCTGGTGCAGCAGTTCGGTCTCGGCGCCCTGCTCGGTCTCGGCGGCGGCTGGTTGCTGCTG 
CAACTGATCAACCGCATGCACCTGGCCGGCGGCCTCTACCCGCTGCTGGTGATCAGCGGCGGCCTGCTGGTG 
TTCGCCCTGGCCAACGCCGTCGGCGGCAGCGGCATCCTGGCCATCTACCTGTGCGGCCTGCTCCTCGGCAAC 
CGCCCGATCCGCAGCCGCCACGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCGCAGATCGGCATG 
TTCCTGGTCCTCGGCCTGCTGGTCACCCCCCACGACCTGTGGCCGATCGCCCTGCCGGCGCTGGCCCTGGCG 
CTGTGGATGATCCTGGTGGCGCGGCCGCTGTCGGTGCTGATCGGACTGATCCCGTTCCGCGCCTTCCACGAC 
CGCGAGAAGGCCTTCATCGCCTGGGTCGGCCTGCGCGGCGCGGTGCCGATCATCCTCGCGGTGTTCCCGCTG 
ATGGCCGGCCTGCCGAACGCCCAGCTGTTCTTCAACGTGGCCTTCTTCATCGTCCTGGTCTCGCTGCTGGTG 
CAGGGCACCAGCCTGCCCTGGGCGGCCAGGCTGCTGCGGGTGGTGGTGCCGCCGGACCCGGCACCGATATCC 
CGCGCCGGCCTGGAGATCCACCCGACCAGCGAGTGGGAGCTGTTCGTCTACCACCTGAACAAGGAAAAGTGG 
TGCATCGGCGCCGCCCTGCGCGAGCTGAAGATGCCCGGCGGGACCCGGATCGCCGCGCTGTTCCGCGGCACC 
GAACTGCTCCACCCGTCGGGCAGCACCATCCTCGAGGCCGACGACATCCTCTGCGTGATCGGCCACGAACAC 
GACCTGCCGGCCCTCGGCAAGCTGTTCAGCCAGGCGCCCGACCGCGGCCTCGGCGCGCGCTTCTTCGGCGAC 
TTCGTGCTGGAAGGCGATGCCCAGCTGTCGGCGGTGGCCTCGCTCTACGGCCTGAAGCTCGACGGCATCGAC 
GGCGAGCAAGCGCTGGGCCGCTTCATCGCCCACGAGATCGGCGGCGAAGCGGTGATCGGCGACCAGGTGGAG 
TGGAACGGCCTGACCTGGACCGTGGCCGCCCTGGAAGGCAACCGTATCCGCAAGGTCGGCGTGAAGTTTCCG 
GAAGGCCGCCCAGGGCCCGGACTTTTCCTCTGA