ViewGene
Locus Name:
GeneID:
Location:

GeneID:6483
TrivialName: PA14_14300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14300
PAO1 Ortholog Locus:
Sequence Length:1128
Protein Length:375
Start: 1221262
Stop: 1220135
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL45877.1| (AE008941) zinc-binding dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)]
Identities = 259/323 (80%), Positives = 300/323 (92%)
Sequence:
ATGGACCTACTACAAGCGCAACGAAGCGAATATCCGTGCCCTCGTCGAGCTGATCGGCGCGGAACTGTAGTT
CTTTCTACGCCACAATATATCGAAAATTCCCGATATCCCTTTTTACCGAAACGAGGATATGCAATGAAAGCG
TTGATACTCAAGGCGTTTGGCGGTCCGGAATCCTTCGAGCTGCGCGAGGTGCCCAAACCGGTGCCGCAGGCG
GGACAGGTATTGGTGCGGGTCCATGCGACCTCGATCAATCCGCTGGACTACCAGGTCCGTCGCGGCGACTAC
CCCGACCTGGTAGCGCTTCCGGCCATCACCGGGCATGACGTGTCCGGCGTCGTCGAAGCGGTAGGGCCGGGA
GTGACCGCCGTCGCACCGGGAGACGAGGTCTGGTACACCCCGCAGATCTTCGAAGGCCAGGGCAGCTATGCC
GAGTACCACCTGGCAGCGGAAAGCATCATCGGCAGGAAGCCCGCCGCGCTGAGCCACCTGGAGGCGGCGAGC
CTCAGCCTGGTCGGCGGCACGGCCTGGGAAGCGCTGGTCACACGCGCGGCGCTGAGGGTCGGCGAAAGCATC
CTGGTGCATGGCGGCGCCGGCGGCGTCGGGCATGTCGCGATCCAGTTGGCGAAGGCCATGGGAGCCCGGGTC
TTCACCACAGTGCGCGAGGTCAACTTCGAGTTCACCCGCCAGATGGGCGCCGATGTGCTCATCGACTACCAG
AAGCAGGACTACGTCGAGGCCATCCTGCGGGAAACCGGAGGCCACGGCGTCGACGTGGTGTTCGACAGCATC
GGCGGCGACACCCTGTCGCGCAGCCCCGAGGTACTCGCGCAGCTCGGCCGCGTGGTCAGCATCGTCGACCTC
GCCCAGCCGCAGAACCTCCTCCAGGCCTGGGGCCGGAACGCGAGCTATCACTTCGTCTTCACCCGGCAGAAC
CGCGGCAAGCTCGACGAGTTGAGCGCCCTGGTCGAGCGCGGCCGGTTGCGCCCGCATGTCGGCGCCGTCTAT
TCGCTTGCCGACATCCCCCTCGCCCACGCCCGCCTGGAGAGTCGCGACAATGGCATCCGGGGAAAAATCGCG
ATCGCGGTCGAGCCGTCGGTCGATCCCGCACAGGCGTTCGCCCGCTGA
Translation:
MDLLQAQRSEYPCPRRADRRGTVVLSTPQYIENSRYPFLPKRGYAMKALILKAFGGPESFELREVPKPVPQA
GQVLVRVHATSINPLDYQVRRGDYPDLVALPAITGHDVSGVVEAVGPGVTAVAPGDEVWYTPQIFEGQGSYA
EYHLAAESIIGRKPAALSHLEAASLSLVGGTAWEALVTRAALRVGESILVHGGAGGVGHVAIQLAKAMGARV
FTTVREVNFEFTRQMGADVLIDYQKQDYVEAILRETGGHGVDVVFDSIGGDTLSRSPEVLAQLGRVVSIVDL
AQPQNLLQAWGRNASYHFVFTRQNRGKLDELSALVERGRLRPHVGAVYSLADIPLAHARLESRDNGIRGKIA
IAVEPSVDPAQAFAR*
AnnotationID:6484GeneID:6483
AnnotatorUID: danlee
Modification Date/Time: 2006-05-12 16:04:55
Gene Name:
Confidence Code:3
GeneProduct:putative zinc-binding oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604, pfam00107, COG1064
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|77459559|ref|YP_349066.1|  Zinc-containing alcohol dehydrogenase superfamily [Pseudomonas fluorescens PfO-1]
     Length=331
     Score =  545 bits (1404),  Expect = 1e-153
     Identities = 268/322 (83%), Positives = 300/322 (93%), Gaps = 0/322 (0%)

gi|17938773|ref|NP_535561.1|  zinc-binding dehydrogenase [Agrobacterium tumefaciens str. C58]
gi|25282984|pir||AG3182  zinc-binding dehydrogenase Atu5188 [imported] - Agrobacterium tumefaciens 
(strain C58, Dupont) plasmid AT
     Length=328
     Score =  534 bits (1376),  Expect = 2e-150
     Identities = 259/323 (80%), Positives = 300/323 (92%), Gaps = 0/323 (0%)







 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production 
and conversion / General function prediction only].
             CD-Length = 326 residues, 100.0% aligned
             Score =  233 bits (595), Expect = 3e-62

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
             CD-Length = 341 residues,  98.5% aligned
             Score =  170 bits (432), Expect = 3e-43

COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only].
             CD-Length = 339 residues,  97.9% aligned
             Score =  145 bits (368), Expect = 6e-36






   
Genomic Context:






   
Comment:


















    ReferenceID:12766




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17057




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6483_CDD.html


    		




 
URL:

















    ReferenceID:30070




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6483
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199896
                           gb|AAK90558.1|
                           (AE007889) AGR_pAT_262p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           379
                           69.92
                           82.58
                           25
                           1366.0
     

     
     
199897
                           emb|CAD73346.1|
                           (BX294139) putative zinc-binding oxidoreductase [Pirellula sp.] [Pirellula sp. 1]
                           375
                           69.60
                           78.66
                           48
                           1369.0
     

     
     
199895
                           gb|AAL45877.1|
                           (AE008941) zinc-binding dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           376
                           69.14
                           80.31
                           49
                           1371.0
     

     
     
199898
                           dbj|BAB72370.1|
                           (AP003582) ORF_ID:all0412~putative zinc-binding oxidoreductase [Nostoc sp. PCC 7120]
                           375
                           40.53
                           54.40
                           57
                           722.0
     

     
     
199901
                           gb|AAC25771.1|
                           (AF072709) putative oxidoreductase [Streptomyces lividans]
                           378
                           35.44
                           48.41
                           68
                           542.0
     

     






      

          
GC ORFID: 49485How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3732676Stop: 3733803

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGACCTACTACAAGCGCAACGAAGCGAATATCCGTGCCCTCGTCGAGCTGATCGGCGCGGAACTGTAGTT 
CTTTCTACGCCACAATATATCGAAAATTCCCGATATCCCTTTTTACCGAAACGAGGATATGCAATGAAAGCG 
TTGATACTCAAGGCGTTTGGCGGTCCGGAATCCTTCGAGCTGCGCGAGGTGCCCAAACCGGTGCCGCAGGCG 
GGACAGGTATTGGTGCGGGTCCATGCGACCTCGATCAATCCGCTGGACTACCAGGTCCGTCGCGGCGACTAC 
CCCGACCTGGTAGCGCTTCCGGCCATCACCGGGCATGACGTGTCCGGCGTCGTCGAAGCGGTAGGGCCGGGA 
GTGACCGCCGTCGCACCGGGAGACGAGGTCTGGTACACCCCGCAGATCTTCGAAGGCCAGGGCAGCTATGCC 
GAGTACCACCTGGCAGCGGAAAGCATCATCGGCAGGAAGCCCGCCGCGCTGAGCCACCTGGAGGCGGCGAGC 
CTCAGCCTGGTCGGCGGCACGGCCTGGGAAGCGCTGGTCACACGCGCGGCGCTGAGGGTCGGCGAAAGCATC 
CTGGTGCATGGCGGCGCCGGCGGCGTCGGGCATGTCGCGATCCAGTTGGCGAAGGCCATGGGAGCCCGGGTC 
TTCACCACAGTGCGCGAGGTCAACTTCGAGTTCACCCGCCAGATGGGCGCCGATGTGCTCATCGACTACCAG 
AAGCAGGACTACGTCGAGGCCATCCTGCGGGAAACCGGAGGCCACGGCGTCGACGTGGTGTTCGACAGCATC 
GGCGGCGACACCCTGTCGCGCAGCCCCGAGGTACTCGCGCAGCTCGGCCGCGTGGTCAGCATCGTCGACCTC 
GCCCAGCCGCAGAACCTCCTCCAGGCCTGGGGCCGGAACGCGAGCTATCACTTCGTCTTCACCCGGCAGAAC 
CGCGGCAAGCTCGACGAGTTGAGCGCCCTGGTCGAGCGCGGCCGGTTGCGCCCGCATGTCGGCGCCGTCTAT 
TCGCTTGCCGACATCCCCCTCGCCCACGCCCGCCTGGAGAGTCGCGACAATGGCATCCGGGGAAAAATCGCG 
ATCGCGGTCGAGCCGTCGGTCGATCCCGCACAGGCGTTCGCCCGCTGA