ViewGene
Locus Name:
GeneID:
Location:

GeneID:6482
TrivialName: PA14_14320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14320
PAO1 Ortholog Locus:
Sequence Length:594
Protein Length:197
Start: 1221589
Stop: 1222182
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68118.1|AE016443_9 (AE016783) hypothetical protein [Pseudomonas putida KT2440]
Identities = 130/165 (78%), Positives = 144/165 (87%)
Sequence:
GTGCCATCCGGCGTTCCCGCCGTTCCTCCCGATCAGCGCAGGCCTTGCGCTCGTTGGCGCCGGAAGGGCGCC
GAGCGACGACCGCCCGTACTCTGCAAAGGACCCGGAATGGACACCCAGACTTCATTGATGATCTTCCAGCTC
ACCTGCTGCCTCGGCTTCGCCCTGTGGCTGAGCCTCGCCCTGATCAACAACCTGCAGGCCTTCGCCAGCTCG
GTGGGGGCGATCGGCGTGACCATGTCGATGGCTCCCCTGGCCCAGCCGCCCGCGATCGACATGCCCTTGCTG
GCGCGGGCGGTGCGCTCGCCGCTCATGCACCGCCTGGCCTTGTCGATCATCGTCGCGCTGCAGGTCGCTGCC
GTCGTCACGGCCTGGACCGGCTGTTACGAACTGCTGTTCGGCGCCGGCCTGGAGACGGCCCGGCCCTGGCTC
AACCTGGCCCTGAGCGCGGCCCTCGGCTTCCTCTTCGGCATGCTGCTGGGCGGGCTCTGGTTCGGCTACTGG
ATCCGCCAGGAGGGATTGCAACTGACCCACCTGCTGCTGGTGGTCTGGGTGCTGGCGAACTTCTTCGTGCTC
AACGTCCGCTGGAGCTGA
Translation:
MPSGVPAVPPDQRRPCARWRRKGAERRPPVLCKGPGMDTQTSLMIFQLTCCLGFALWLSLALINNLQAFASS
VGAIGVTMSMAPLAQPPAIDMPLLARAVRSPLMHRLALSIIVALQVAAVVTAWTGCYELLFGAGLETARPWL
NLALSAALGFLFGMLLGGLWFGYWIRQEGLQLTHLLLVVWVLANFFVLNVRWS*
AnnotationID:6483GeneID:6482
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 12:12:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|26989229|ref|NP_744654.1|  hypothetical protein PP2506 [Pseudomonas putida KT2440]
gi|24984072|gb|AAN68118.1|  hypothetical protein [Pseudomonas putida KT2440]
     Length=179
     Score =  273 bits (698),  Expect = 2e-72
     Identities = 130/165 (78%), Positives = 144/165 (87%), Gaps = 0/165 (0%)







 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30068




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6482
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199894
                           gb|AAN68118.1|AE016443_9
                           (AE016783) hypothetical protein [Pseudomonas putida KT2440]
                           197
                           68.02
                           75.63
                           18
                           695.0
     

     






      

          
GC ORFID: 49484How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3732349Stop: 3731756

          
Length: 594


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCCATCCGGCGTTCCCGCCGTTCCTCCCGATCAGCGCAGGCCTTGCGCTCGTTGGCGCCGGAAGGGCGCC 
GAGCGACGACCGCCCGTACTCTGCAAAGGACCCGGAATGGACACCCAGACTTCATTGATGATCTTCCAGCTC 
ACCTGCTGCCTCGGCTTCGCCCTGTGGCTGAGCCTCGCCCTGATCAACAACCTGCAGGCCTTCGCCAGCTCG 
GTGGGGGCGATCGGCGTGACCATGTCGATGGCTCCCCTGGCCCAGCCGCCCGCGATCGACATGCCCTTGCTG 
GCGCGGGCGGTGCGCTCGCCGCTCATGCACCGCCTGGCCTTGTCGATCATCGTCGCGCTGCAGGTCGCTGCC 
GTCGTCACGGCCTGGACCGGCTGTTACGAACTGCTGTTCGGCGCCGGCCTGGAGACGGCCCGGCCCTGGCTC 
AACCTGGCCCTGAGCGCGGCCCTCGGCTTCCTCTTCGGCATGCTGCTGGGCGGGCTCTGGTTCGGCTACTGG 
ATCCGCCAGGAGGGATTGCAACTGACCCACCTGCTGCTGGTGGTCTGGGTGCTGGCGAACTTCTTCGTGCTC 
AACGTCCGCTGGAGCTGA