ViewGene
Locus Name:
GeneID:
Location:

GeneID:6481
TrivialName: PA14_14310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14310
PAO1 Ortholog Locus:
Sequence Length:303
Protein Length:100
Start: 1221495
Stop: 1221193
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68096.1|AE016441_8 (AE016783) transcriptional regulator, ArsR family [Pseudomonas putida KT2440]
Identities = 57/96 (59%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Sequence:
ATGGACCTGCTCGAAACATTCAAAGCCCTGTCGAACCGGACACGCCTGGAAATCCTGAAAGGCCTGAAGGAC
CCGGCGAAGAACTTTCCTCCGCAGGACGAGGGCGACGTCGACACCGTGGGCGTCTGCGTCAGCAGTATCCAG
GAGGGCGTCGGCCTGTCGCAGTCGACCGTGTCCGATTACCTGGCGATCCTGCAACGGGCGGGCCTGGTCGAA
GTCAGGCGGATCGGCCAATGGACCTACTACAAGCGCAACGAAGCGAATATCCGTGCCCTCGTCGAGCTGATC
GGCGCGGAACTGTAG
Translation:
MDLLETFKALSNRTRLEILKGLKDPAKNFPPQDEGDVDTVGVCVSSIQEGVGLSQSTVSDYLAILQRAGLVE
VRRIGQWTYYKRNEANIRALVELIGAEL*
AnnotationID:6482GeneID:6481
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 12:12:06
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|77459560|ref|YP_349067.1|  Transcriptional Regulator, ArsR family [Pseudomonas fluorescens PfO-1]
     Length=100
     Score =  172 bits (436),  Expect = 3e-42
     Identities = 86/100 (86%), Positives = 89/100 (89%), Gaps = 0/100 (0%)

gi|46317420|ref|ZP_00217998.1|  COG0640: Predicted transcriptional regulators [Burkholderia cepacia R18194]
     Length=100
     Score =  171 bits (432),  Expect = 8e-42
     Identities = 86/100 (86%), Positives = 90/100 (90%), Gaps = 0/100 (0%)







 
Structural Features:
smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.
             CD-Length = 79 residues,  96.2% aligned
             Score = 68.3 bits (167), Expect = 2e-13

cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated 
homodimeric repressors.
             CD-Length = 78 residues,  97.4% aligned
             Score = 60.4 bits (146), Expect = 5e-11

pfam01022, HTH_5, Bacterial regulatory protein, arsR family. 
             CD-Length = 80 residues,  96.2% aligned
             Score = 53.0 bits (127), Expect = 7e-09






   
Genomic Context:






   
Comment:


















    ReferenceID:12762




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16961




  
Author/Investigator(s):
        Jonathan Urbach





  
Title:
        Conserved Domain Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-Search.htm


    		




 
URL:

















    ReferenceID:30066




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6481
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199892
                           gb|AAN68096.1|AE016441_8
                           (AE016783) transcriptional regulator, ArsR family [Pseudomonas putida KT2440]
                           106
                           56.60
                           64.15
                           11
                           253.0
     

     
     
199893
                           gb|AAO54858.1|
                           (AE016860) transcriptional regulator, ArsR family [Pseudomonas syringae pv. tomato str. DC3000]
                           100
                           52.00
                           67.00
                           2
                           249.0
     

     






      

          
GC ORFID: 49483How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3732443Stop: 3732745

          
Length: 303


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGACCTGCTCGAAACATTCAAAGCCCTGTCGAACCGGACACGCCTGGAAATCCTGAAAGGCCTGAAGGAC 
CCGGCGAAGAACTTTCCTCCGCAGGACGAGGGCGACGTCGACACCGTGGGCGTCTGCGTCAGCAGTATCCAG 
GAGGGCGTCGGCCTGTCGCAGTCGACCGTGTCCGATTACCTGGCGATCCTGCAACGGGCGGGCCTGGTCGAA 
GTCAGGCGGATCGGCCAATGGACCTACTACAAGCGCAACGAAGCGAATATCCGTGCCCTCGTCGAGCTGATC 
GGCGCGGAACTGTAG