ViewGene
Locus Name:
GeneID:
Location:

GeneID:648
TrivialName: PA14_33690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33690
PAO1 Ortholog Locus:PA2397
Sequence Length:1650
Protein Length:549
Start: 2990358
Stop: 2988709
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05785.1|AE004666_1 (AE004666) pyoverdine biosynthesis protein PvdE [Pseudomonas aeruginosa PAO1]
Identities = 549/549 (100%), Positives = 549/549 (100%)
Sequence:
ATGACCAATCCCAAGCGCGGCGCCATTCGCGAACTGCTCGCCCTGCTCAGGCCCTTTCGAGCGATCGTGGCC
GTCTCCATAGCACTGGGCATGGCCGGCGGCCTTGCCATCACCCTGCTGCTGGCCAGCATCAACAACGCCTTG
CACTCGGAAAACGGCCTCGGCCAAGGCGTCCTGCTGTCGTTCGGCGGACTCTGCCTGCTGGCATTGGTCAGT
TCGATCGTCTCCGACATCGGTACCAGCTACGTCGGCCAACACATCATCGCGAAGCTGCGCAAGGAACTCGGC
GAGAAAGTCCTCTCGGCGCCCATCGAGCAGATCGAGCGCTACCGGACCCACCGTCTCATTCCGGTACTGACA
CACGACATTGACACCATCAGCGACTTCTCCTTTTCCTTCACCCCACTGGCCATAGCCCTGACCATCACTTTC
GGCTGCCTGGGTTACCTCGCCTACCTATCGGTCCCGATGTTCCTGCTGACAGTCGTCGCCATCGTCATCGGC
ACGGCAGCCCAGTACCTGGCGCGCTCCCGCGGTTTCAAAGGGTTCTATGCCGCCCGCGATCTCGAAGACGAA
TTGCAGAAGCACTACACCGCCATCGCTTCGGGCGCGAAGGAACTGCGCATCCACCGCCCCCGTCGCTATCGC
ATGCACACCGGCCGCATCAGCGAAACCGCGAACAACATCCGCGACCTCCACATCAGCTCCATCAATATATTC
ATCCTGGCCAAGACCTTCGGCTCGATGCTGTTCTTCGTGGTGATCGGTCTGGCGCTTACGCTCCAGGCCTAC
TGGCCTTCGTCCAATCCGGCCGCCATCACTGGCTTCGTGATGGTCCTGCTGTACATGAAGGGACCACTCGAA
CAGGTGGTGACCATCCTTCCCATCGTCAGCCGCGCCCAGGTCGCCTTCCAGCGGGTCGCCGAACTTTCCGAG
CGTTTTTCCTCTCCCGAACCCCATCTTCTGCTCAGCGAACAGGAGGCCCCGGACAAGACCGTCGACAGCCTG
GAACTGCGCGACGTTCGCTACAGCCCCCCCGCCGTCGAAGGCAGCGAACCGTTCCATCTGGGCCCTATCAAT
CTGCGTATCGCCCAAGGTGACATCGTCTTCATCGTCGGCGAGAACGGCTGCGGCAAGACGACCCTGATCAAG
CTGCTGCTCGGCCTCTATCGCCCGCAGTCCGGCGAGATCCTTCTCAACGGAGAACCGGTCAGCGCGGAGACC
CGCGACGATTACCGCCAGCTCTTCAGCACCATCTTCGCCGACTACTACCTCTTCGACGACCTGGTCCAGGGC
AAGCAGGCTTCGTTGCAGAACGCGACCCAATATCTGCAACGCCTGGAAATCGCCCACAAGGTCAGCGTCATG
GACGGCAACTTCAGCACCACCGATCTCTCCACCGGGCAGCGCAAGCGCCTTGCGCTGATCAATGCCTGGCTC
GAAGAGCGGCCGGTCCTGGTCTTCGACGAATGGGCCGCAGACCAGGACCCGGCTTTCCGCAGGGTCTTCTAC
ACCGAACTGTTGCCGGACCTGAAGCGCCAGGGCAAGACCATCATCGTGATCAGCCACGATGATCGCTATTTC
GAAATGGCGGACCAGTTGATAAGGCTCTCGGCAGGCAAGGTCGTCAAGGAAACCGAGACGGCGTGA
Translation:
MTNPKRGAIRELLALLRPFRAIVAVSIALGMAGGLAITLLLASINNALHSENGLGQGVLLSFGGLCLLALVS
SIVSDIGTSYVGQHIIAKLRKELGEKVLSAPIEQIERYRTHRLIPVLTHDIDTISDFSFSFTPLAIALTITF
GCLGYLAYLSVPMFLLTVVAIVIGTAAQYLARSRGFKGFYAARDLEDELQKHYTAIASGAKELRIHRPRRYR
MHTGRISETANNIRDLHISSINIFILAKTFGSMLFFVVIGLALTLQAYWPSSNPAAITGFVMVLLYMKGPLE
QVVTILPIVSRAQVAFQRVAELSERFSSPEPHLLLSEQEAPDKTVDSLELRDVRYSPPAVEGSEPFHLGPIN
LRIAQGDIVFIVGENGCGKTTLIKLLLGLYRPQSGEILLNGEPVSAETRDDYRQLFSTIFADYYLFDDLVQG
KQASLQNATQYLQRLEIAHKVSVMDGNFSTTDLSTGQRKRLALINAWLEERPVLVFDEWAADQDPAFRRVFY
TELLPDLKRQGKTIIVISHDDRYFEMADQLIRLSAGKVVKETETA*
AnnotationID:657GeneID:648
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:33
Gene Name:pvdE
Confidence Code:1
GeneProduct:pyoverdine biosynthesis protein PvdE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:pyoverdine ABC export system, permease/ATP-binding protein
Functional Category Confidence Code:5
COGs:COG4615
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69797.1|AE016616_4 (AE016789) pyoverdine ABC export system, permease/ATP-binding
           protein [Pseudomonas putida KT2440]
          Length = 552

 Score =  783 bits (2023), Expect = 0.0
 Identities = 384/549 (69%), Positives = 466/549 (84%)

>gb|AAO55670.1| (AE016863) pyoverdine ABC transporter, ATP-binding/permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 554

 Score =  664 bits (1712), Expect = 0.0
 Identities = 332/545 (60%), Positives = 420/545 (77%)








 
Structural Features:
COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components 
[Secondary metabolites biosynthesis, transport, and catabolism / 
Inorganic ion transport and metabolism]
CD-Length = 546 residues,  97.1% aligned
Score =  709 bits (1832), Expect = 0.0
Identities = 257/543 (47%), Positives = 335/543 (61%), Gaps = 18/543 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18441




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32947




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:648_cdd.html


    		




 
URL:

















    ReferenceID:34486




  
Author/Investigator(s):
        McMorran BJ, Merriman ME, Rombel IT, Lamont IL.





  
Title:
        Characterisation of the pvdE gene which is required for pyoverdine synthesis in Pseudomonas aeruginosa.




  
PubMed:
        8918232


MedLine:
        




    
Source:
Gene. 1996 Oct 17;176(1-2):55-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8918232









           
Homologs By Global Alignment 

           

       



     
Gene ID:648
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1099
                           PA2397_tr
                           translation of PA2397
                           549
                           99.99
                           99.99
                           0
                           2755.0
     

     
     
41726
                           gb|AAG05785.1|AE004666_1
                           (AE004666) pyoverdine biosynthesis protein PvdE [Pseudomonas aeruginosa PAO1]
                           549
                           99.99
                           99.99
                           0
                           2755.0
     

     
     
41727
                           gb|AAB60200.1|
                           (U07359) pyoverdine synthetase E [Pseudomonas aeruginosa]
                           549
                           98.54
                           98.72
                           1
                           2699.0
     

     
     
41728
                           gb|AAN69797.1|AE016616_4
                           (AE016789) pyoverdine ABC export system, permease/ATP-binding protein [Pseudomonas putida KT2440]
                           552
                           69.56
                           84.42
                           3
                           2023.0
     

     
     
41729
                           gb|AAO17438.1|
                           (AF540993) PvdE [Pseudomonas aeruginosa]
                           550
                           64.54
                           81.09
                           1
                           1868.0
     

     






      

          
GC ORFID: 43650How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2397Glimmer Score: 

          
Start: 1963558Stop: 1965207

          
Length: 1650


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2397 translation of PA2397Homolog Bit Score 1065.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene467 (ORF: BLASTX 658.0), t_PA2397 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAATCCCAAGCGCGGCGCCATTCGCGAACTGCTCGCCCTGCTCAGGCCCTTTCGAGCGATCGTGGCC 
GTCTCCATAGCACTGGGCATGGCCGGCGGCCTTGCCATCACCCTGCTGCTGGCCAGCATCAACAACGCCTTG 
CACTCGGAAAACGGCCTCGGCCAAGGCGTCCTGCTGTCGTTCGGCGGACTCTGCCTGCTGGCATTGGTCAGT 
TCGATCGTCTCCGACATCGGTACCAGCTACGTCGGCCAACACATCATCGCGAAGCTGCGCAAGGAACTCGGC 
GAGAAAGTCCTCTCGGCGCCCATCGAGCAGATCGAGCGCTACCGGACCCACCGTCTCATTCCGGTACTGACA 
CACGACATTGACACCATCAGCGACTTCTCCTTTTCCTTCACCCCACTGGCCATAGCCCTGACCATCACTTTC 
GGCTGCCTGGGTTACCTCGCCTACCTATCGGTCCCGATGTTCCTGCTGACAGTCGTCGCCATCGTCATCGGC 
ACGGCAGCCCAGTACCTGGCGCGCTCCCGCGGTTTCAAAGGGTTCTATGCCGCCCGCGATCTCGAAGACGAA 
TTGCAGAAGCACTACACCGCCATCGCTTCGGGCGCGAAGGAACTGCGCATCCACCGCCCCCGTCGCTATCGC 
ATGCACACCGGCCGCATCAGCGAAACCGCGAACAACATCCGCGACCTCCACATCAGCTCCATCAATATATTC 
ATCCTGGCCAAGACCTTCGGCTCGATGCTGTTCTTCGTGGTGATCGGTCTGGCGCTTACGCTCCAGGCCTAC 
TGGCCTTCGTCCAATCCGGCCGCCATCACTGGCTTCGTGATGGTCCTGCTGTACATGAAGGGACCACTCGAA 
CAGGTGGTGACCATCCTTCCCATCGTCAGCCGCGCCCAGGTCGCCTTCCAGCGGGTCGCCGAACTTTCCGAG 
CGTTTTTCCTCTCCCGAACCCCATCTTCTGCTCAGCGAACAGGAGGCCCCGGACAAGACCGTCGACAGCCTG 
GAACTGCGCGACGTTCGCTACAGCCCCCCCGCCGTCGAAGGCAGCGAACCGTTCCATCTGGGCCCTATCAAT 
CTGCGTATCGCCCAAGGTGACATCGTCTTCATCGTCGGCGAGAACGGCTGCGGCAAGACGACCCTGATCAAG 
CTGCTGCTCGGCCTCTATCGCCCGCAGTCCGGCGAGATCCTTCTCAACGGAGAACCGGTCAGCGCGGAGACC 
CGCGACGATTACCGCCAGCTCTTCAGCACCATCTTCGCCGACTACTACCTCTTCGACGACCTGGTCCAGGGC 
AAGCAGGCTTCGTTGCAGAACGCGACCCAATATCTGCAACGCCTGGAAATCGCCCACAAGGTCAGCGTCATG 
GACGGCAACTTCAGCACCACCGATCTCTCCACCGGGCAGCGCAAGCGCCTTGCGCTGATCAATGCCTGGCTC 
GAAGAGCGGCCGGTCCTGGTCTTCGACGAATGGGCCGCAGACCAGGACCCGGCTTTCCGCAGGGTCTTCTAC 
ACCGAACTGTTGCCGGACCTGAAGCGCCAGGGCAAGACCATCATCGTGATCAGCCACGATGATCGCTATTTC 
GAAATGGCGGACCAGTTGATAAGGCTCTCGGCAGGCAAGGTCGTCAAGGAAACCGAGACGGCGTGA