ViewGene
Locus Name:
GeneID:
Location:

GeneID:6463
TrivialName: PA14_15160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15160
PAO1 Ortholog Locus:
Sequence Length:708
Protein Length:235
Start: 1285843
Stop: 1285136
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM25664.1| (AE013195) D-alanyl-D-alanine dipeptidase [Thermoanaerobacter tengcongensis]
Identities = 90/215 (41%), Positives = 122/215 (56%), Gaps = 5/215 (2%)
Sequence:
GTGGCCGGCATCCCCATCGTCGATGCCGGCACGCCGCTGGAGGCGCTCGGGCTGAGCCGTGACTTCAGCGTC
TGGCCGGCCTACCACAAGCTCGGCATTCCTCACGCGATCCCGGAGTGCCACGCTCGCGGCGAGGTCTTCGAG
CGTCTCCTGCGGGTCGCCGCCGCCCTCCCCGGCGGCGTGCGCCTGGTGGTGCTGGACGCCTGGCGGCCGTTC
GCCGTGCAGCAGTATCTCTACGACAGCCTGTCCAGCGCCCTGGCCGCGCACTACCCACGGGCCGGCGAAGCC
GAGCTGGAACGGCTCACCCGCCAGTTCGTCTCGCCGCCGAGCAGCAGCCGCGAGGCGCCCAGCCCGCATCTC
ACCGGCGGCGCGGTGGACGTCACCCTGTGCGACGCCCAGGGCCGCTGGCTGGACATGGGCAGCGCCTTCGAC
GAAGCCGTGCCGGCCTCCTACACCGCCTACTTCGAACGCCTGGCGGAGCCCGACGCGCGCCAGCGACGCGTC
CGCGATCACCGTCGCCTGCTCTATCACGCGATGCTCGACGCCGGTTTCAGCAACCTGCCCAGCGAATGGTGG
CACTACGATTTCGGCGACCAGCTCTGGGCCTGGCACACCGGCGCGACGCAGGCGCTGTTCGGCCCGGTACAG
TTGCAGGCGATGGACGCGCTCTGGCGCCAGCAGTTGCAGAAGCGCCCCCCGGCGGACTAG
Translation:
MAGIPIVDAGTPLEALGLSRDFSVWPAYHKLGIPHAIPECHARGEVFERLLRVAAALPGGVRLVVLDAWRPF
AVQQYLYDSLSSALAAHYPRAGEAELERLTRQFVSPPSSSREAPSPHLTGGAVDVTLCDAQGRWLDMGSAFD
EAVPASYTAYFERLAEPDARQRRVRDHRRLLYHAMLDAGFSNLPSEWWHYDFGDQLWAWHTGATQALFGPVQ
LQAMDALWRQQLQKRPPAD*
AnnotationID:6464GeneID:6463
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 21:09:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB93448.1| (AL939112) putative dipeptidase [Streptomyces coelicolor A3(2)]
          Length = 218

 Score =  118 bits (295), Expect = 3e-26
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 16/181 (8%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:16230




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30031




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31773




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6463_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6463
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199889
                           gb|AAM25664.1|
                           (AE013195) D-alanyl-D-alanine dipeptidase [Thermoanaerobacter tengcongensis]
                           262
                           35.87
                           49.61
                           36
                           446.0
     

     
     
199890
                           gb|AAQ58576.1|
                           (AE016913) d-alanyl-d-alanine dipeptidase [Chromobacterium violaceum ATCC 12472]
                           239
                           33.47
                           44.35
                           52
                           310.0
     

     






      

          
GC ORFID: 49465How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3668094Stop: 3668801

          
Length: 708


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGCCGGCATCCCCATCGTCGATGCCGGCACGCCGCTGGAGGCGCTCGGGCTGAGCCGTGACTTCAGCGTC 
TGGCCGGCCTACCACAAGCTCGGCATTCCTCACGCGATCCCGGAGTGCCACGCTCGCGGCGAGGTCTTCGAG 
CGTCTCCTGCGGGTCGCCGCCGCCCTCCCCGGCGGCGTGCGCCTGGTGGTGCTGGACGCCTGGCGGCCGTTC 
GCCGTGCAGCAGTATCTCTACGACAGCCTGTCCAGCGCCCTGGCCGCGCACTACCCACGGGCCGGCGAAGCC 
GAGCTGGAACGGCTCACCCGCCAGTTCGTCTCGCCGCCGAGCAGCAGCCGCGAGGCGCCCAGCCCGCATCTC 
ACCGGCGGCGCGGTGGACGTCACCCTGTGCGACGCCCAGGGCCGCTGGCTGGACATGGGCAGCGCCTTCGAC 
GAAGCCGTGCCGGCCTCCTACACCGCCTACTTCGAACGCCTGGCGGAGCCCGACGCGCGCCAGCGACGCGTC 
CGCGATCACCGTCGCCTGCTCTATCACGCGATGCTCGACGCCGGTTTCAGCAACCTGCCCAGCGAATGGTGG 
CACTACGATTTCGGCGACCAGCTCTGGGCCTGGCACACCGGCGCGACGCAGGCGCTGTTCGGCCCGGTACAG 
TTGCAGGCGATGGACGCGCTCTGGCGCCAGCAGTTGCAGAAGCGCCCCCCGGCGGACTAG