ViewGene
Locus Name:
GeneID:
Location:

GeneID:646
TrivialName: PA14_64050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64050
PAO1 Ortholog Locus:PA4843
Sequence Length:1629
Protein Length:542
Start: 5706731
Stop: 5708359
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08228.1|AE004897_6 (AE004897) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 542/542 (100%), Positives = 542/542 (100%)
Sequence:
ATGATGACCGAGCACGATGACCCGACCCTGGACCGCCTGAAGCACCACTTCGCCCAGCGAGTGATCAACCAG
GCGCGCCAGGTTCTGGAGGTCTGGCAACGCCTGACCCGCGCGGAGTGGAACAGCGACGGCATGGAAGAACTG
GCCGACGCCACCCTGCGCCTGCAGCGCTACGCCGAACGCTTCGAGCAAGCCGAGCATGCCCAGCTGGCCGGT
GCCATCGACCGTACCCTGGACGTCGTCGAGGCCAACCGCGGCCGGCTTTCCAGCGAGTCGATCAGCGAACTC
AACCAGTTGATGCAGCGCCTGTCGCGCACCGGCCTGCGGCATGGCGACCAGCTCGAGCACACCGTCCTGCCG
CCATTGCGCAAACCGGTCTACCTGGCACTGAAGGACCGCGAACGCGCCGAGCGCCTGGCCCAGCAACTGGAG
TTCTTCGGTCTGCAGGCGCTGAGCTGCGAGACCGCCGACGCCTTCCGCGCCAGCATGCGCGAACGCTACCCG
GCGGCGATCGTCATGGAAGTCGACTTCGCCGGCCCCGACATGGGCCTGCGACTGGCCAGCGAGGCCCAGGCC
GGCCTCGAACACAAGCTGCCGGTGCTGTTCTTCAGCGACAGCGAGACCGACACCCCGACCCGCCTGGCCGCA
GCCCGCGCCGGCGGCCAGGAATTCTTCACCGGCACCCTGGACGCCTCCAGCGTGCTGGAAAAGATCGAGACC
CTCAGCCGCCTGAGCTTCTACGAACCCTACCGGGTACTGATCGTCGACGACTCCCGGGCCCAGGCGCTGCAC
ACCGAGATGGTCCTCAACAGCGCCGGGATCATCACCCGCGCGCTCACCGAGCCGCTGTCGGTGATGGCCGAG
CTGAGCGACTTCCAGCCCGACCTGATCATCCTCGACATGTACATGCCCGAGTGCCTGGGCACCGAGTTGGCC
AAGGTGATCCGCCAGCACGAACGCCACGTCAGCGTGCCGATCATCTACCTGTCCGCCGAGGACGACCTGGAC
AAGCAGCTGGACGCCATGAGCGAAGGCGGCGACGACTTCCTCACCAAGCCGATCCGCCCGCGCCACCTGATC
GCCACCGTGCGCACCCGCGCCAGCCGCGCGCGCAGCCTGAAGGCGCGGATGGTGCGCGACAGCCTGACCGGC
CTGTACAACCACACCCATACCCTGCAACTGCTCGAGGACGCCCGCCTGCGCGCGCGTCGCGATGGCCGTCCG
CTGAGCTTCGCGATGCTCGACATCGACCACTTCAAGCAGGTCAACGACCGTTTCGGCCACCCCATGGGCGAC
CGGGTGATCAAGGGCCTGGCGCTGTTTCTCAAGCAGCGCCTGCGCAAGACCGACCACATCGGCCGCTATGGC
GGCGAGGAGTTCGCCGTGGTCCTTCCGGACACCGATCTGGACGCCGCGCGCCTGGTGCTCGACGAGATTCGC
CAGCGCTTCGCCGAGATCCACTACCCGGCGCAACCGACCGACCTGCGCTGCACCTTCAGTTGCGGCATCGCC
GAGCTGACCCCGGACCTCGATATCAAGAGCATGGCCAAGCAGGCCGACGAAGCGCTGTACCGGGCCAAGCAC
GGCGGACGCAACCGGATCGAGGTATATCGTCCCGACGCCCGGTAA
Translation:
MMTEHDDPTLDRLKHHFAQRVINQARQVLEVWQRLTRAEWNSDGMEELADATLRLQRYAERFEQAEHAQLAG
AIDRTLDVVEANRGRLSSESISELNQLMQRLSRTGLRHGDQLEHTVLPPLRKPVYLALKDRERAERLAQQLE
FFGLQALSCETADAFRASMRERYPAAIVMEVDFAGPDMGLRLASEAQAGLEHKLPVLFFSDSETDTPTRLAA
ARAGGQEFFTGTLDASSVLEKIETLSRLSFYEPYRVLIVDDSRAQALHTEMVLNSAGIITRALTEPLSVMAE
LSDFQPDLIILDMYMPECLGTELAKVIRQHERHVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIRPRHLI
ATVRTRASRARSLKARMVRDSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGD
RVIKGLALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFAEIHYPAQPTDLRCTFSCGIA
ELTPDLDIKSMAKQADEALYRAKHGGRNRIEVYRPDAR*
AnnotationID:655GeneID:646
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA4843
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3706
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58266.1| (AE016873) response regulator [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 551

 Score =  787 bits (2032), Expect = 0.0
 Identities = 392/533 (73%), Positives = 454/533 (85%)

>gb|AAN66190.1|AE016246_7 (AE016776) response regulator [Pseudomonas putida KT2440]
          Length = 451

 Score =  598 bits (1543), Expect = e-170
 Identities = 303/440 (68%), Positives = 358/440 (81%), Gaps = 1/440 (0%)








 
Structural Features:
COG3706, PleD, Response regulator containing a CheY-like receiver domain 
and a GGDEF domain 
[Signal transduction mechanisms]
CD-Length = 435 residues, 100.0% aligned
Score =  339 bits (872), Expect = 4e-94
Identities = 143/468 (30%), Positives = 218/468 (46%), Gaps = 46/468 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1295




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18437




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35207




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:646_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:646
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1094
                           PA4843_tr
                           translation of PA4843
                           542
                           99.99
                           99.99
                           0
                           2756.0
     

     
     
41618
                           gb|AAG08228.1|AE004897_6
                           (AE004897) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           542
                           99.99
                           99.99
                           0
                           2756.0
     

     
     
41619
                           gb|AAO58266.1|
                           (AE016873) response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           552
                           71.19
                           82.42
                           11
                           2026.0
     

     
     
41620
                           gb|AAN66190.1|AE016246_7
                           (AE016776) response regulator [Pseudomonas putida KT2440]
                           543
                           56.16
                           66.85
                           93
                           1543.0
     

     
     
41621
                           gb|AAQ57770.2|
                           (AE016910) probable two-component response regulator [Chromobacterium violaceum ATCC 12472]
                           548
                           31.93
                           42.15
                           149
                           732.0
     

     






      

          
GC ORFID: 43648How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4843Glimmer Score: 

          
Start: 4970411Stop: 4972039

          
Length: 1629


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4843 translation of PA4843Homolog Bit Score 1066.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5317 (ORF: BLASTX 781.0), t_PA4843 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGACCGAGCACGATGACCCGACCCTGGACCGCCTGAAGCACCACTTCGCCCAGCGAGTGATCAACCAG 
GCGCGCCAGGTTCTGGAGGTCTGGCAACGCCTGACCCGCGCGGAGTGGAACAGCGACGGCATGGAAGAACTG 
GCCGACGCCACCCTGCGCCTGCAGCGCTACGCCGAACGCTTCGAGCAAGCCGAGCATGCCCAGCTGGCCGGT 
GCCATCGACCGTACCCTGGACGTCGTCGAGGCCAACCGCGGCCGGCTTTCCAGCGAGTCGATCAGCGAACTC 
AACCAGTTGATGCAGCGCCTGTCGCGCACCGGCCTGCGGCATGGCGACCAGCTCGAGCACACCGTCCTGCCG 
CCATTGCGCAAACCGGTCTACCTGGCACTGAAGGACCGCGAACGCGCCGAGCGCCTGGCCCAGCAACTGGAG 
TTCTTCGGTCTGCAGGCGCTGAGCTGCGAGACCGCCGACGCCTTCCGCGCCAGCATGCGCGAACGCTACCCG 
GCGGCGATCGTCATGGAAGTCGACTTCGCCGGCCCCGACATGGGCCTGCGACTGGCCAGCGAGGCCCAGGCC 
GGCCTCGAACACAAGCTGCCGGTGCTGTTCTTCAGCGACAGCGAGACCGACACCCCGACCCGCCTGGCCGCA 
GCCCGCGCCGGCGGCCAGGAATTCTTCACCGGCACCCTGGACGCCTCCAGCGTGCTGGAAAAGATCGAGACC 
CTCAGCCGCCTGAGCTTCTACGAACCCTACCGGGTACTGATCGTCGACGACTCCCGGGCCCAGGCGCTGCAC 
ACCGAGATGGTCCTCAACAGCGCCGGGATCATCACCCGCGCGCTCACCGAGCCGCTGTCGGTGATGGCCGAG 
CTGAGCGACTTCCAGCCCGACCTGATCATCCTCGACATGTACATGCCCGAGTGCCTGGGCACCGAGTTGGCC 
AAGGTGATCCGCCAGCACGAACGCCACGTCAGCGTGCCGATCATCTACCTGTCCGCCGAGGACGACCTGGAC 
AAGCAGCTGGACGCCATGAGCGAAGGCGGCGACGACTTCCTCACCAAGCCGATCCGCCCGCGCCACCTGATC 
GCCACCGTGCGCACCCGCGCCAGCCGCGCGCGCAGCCTGAAGGCGCGGATGGTGCGCGACAGCCTGACCGGC 
CTGTACAACCACACCCATACCCTGCAACTGCTCGAGGACGCCCGCCTGCGCGCGCGTCGCGATGGCCGTCCG 
CTGAGCTTCGCGATGCTCGACATCGACCACTTCAAGCAGGTCAACGACCGTTTCGGCCACCCCATGGGCGAC 
CGGGTGATCAAGGGCCTGGCGCTGTTTCTCAAGCAGCGCCTGCGCAAGACCGACCACATCGGCCGCTATGGC 
GGCGAGGAGTTCGCCGTGGTCCTTCCGGACACCGATCTGGACGCCGCGCGCCTGGTGCTCGACGAGATTCGC 
CAGCGCTTCGCCGAGATCCACTACCCGGCGCAACCGACCGACCTGCGCTGCACCTTCAGTTGCGGCATCGCC 
GAGCTGACCCCGGACCTCGATATCAAGAGCATGGCCAAGCAGGCCGACGAAGCGCTGTACCGGGCCAAGCAC 
GGCGGACGCAACCGGATCGAGGTATATCGTCCCGACGCCCGGTAA