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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAM37139.1| (AE011866) phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
Identities = 385/400 (96%), Positives = 393/400 (98%)
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Sequence:
ATGCTGACCGATACCAAGCTGCGTAACCTCAAGCCGAGGGACAAGCTATACAAGGAAAACGACCGTGACGGC
CTCTATGTGGCCGTCACGCCCGCCGGAGCGATCTCGTTCCGCTACAACTACTTGATCCACGGCCGGCAGGAG
ACCATCACCTTCGGCCGCTATGGCGTTGGCGGCATCACCCTTGCGGAAGCCCGCGAGCGGTTGGGCGAGGCC
AAGAAGATGATCGCGGCCGGGAAGTCGCCGGCCAAAGAGAAGGCGCGGGACAAGGCCCGCGTCAAGGATGCG
GAGACGTTCGGGGCGTGGGCGGAAAAGTGGCTGCGCGGCTACCAGATGGCTGACTCCACCCGCGACATGCGC
CGTTCAATCTACGAGCGCGAGCTGAAGCCTAAATTCAGCAACCAGAAGCTGGTGGAGATCACCCACGAGGAC
TTGCGGGCGCTGACCGATGCCATCGTGGAGCGCGGTGCACCGGCGACCGCAGTGCATGCTCGCGAGGTGATG
TTGCAGGTCTTTCGCTGGGCCATCGAGCGCGGCCAGAAGGTCGAGAACCCGGCAGAGCTGGTGCGGCCGACG
ACTATCGCCAAGTTCGAGCCGCGCGACCGTGCGCTGACGCCCGACGAGATCCGTCTGATGTATCAGTACATG
GAGCGCATCGGCACAACGCCATCCATTCGGGCTGCCGCCAAGTTGTTGCTGCTGACGATGGTGCGCAAGAGC
GAGCTGACCAACGCGACCTGGAGCGAGATCAACTTCAGCGAGGCGCTTTGGACCATCCCGAAGGAGCGGATG
AAGCGACGCAATCCGCACCTGGTGTTCCTGTCCCGGCAGGCGCTGGACATCTTCATTGCCCTCAAGACCTTT
GCCGGCGGATCGGACTACGTGTTGCCGTCGCGGTACGACTCGGACTTGCCCATGAGCAGCGCCACGCTCAAC
CAGGTGCTGACGCTGACGTATCGGCTGGCGCAGAAGGAAGGGAAGTCGCTCGCCAAGTTCGGGCCACATGAC
TTGCGGCGCACAGCCAGCACGTTGTTGCATGAGGCCGGCTACAACACGGACTGGATTGAGAAGTGCCTGGCG
CACGAGCAGCGAGGCGTCAGGGCCGTCTACAACAAGGCCGAGTACCGCGAGCAGCGGACGGCGATGTTGCAA
GACTGGGCGGACATGATCGACGAATGGACACTGAAGCGGCCGAAGGCGTAA |
Translation:
MLTDTKLRNLKPRDKLYKENDRDGLYVAVTPAGAISFRYNYLIHGRQETITFGRYGVGGITLAEARERLGEA
KKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQMADSTRDMRRSIYERELKPKFSNQKLVEITHED
LRALTDAIVERGAPATAVHAREVMLQVFRWAIERGQKVENPAELVRPTTIAKFEPRDRALTPDEIRLMYQYM
ERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTF
AGGSDYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLA
HEQRGVRAVYNKAEYREQRTAMLQDWADMIDEWTLKRPKA* |
AnnotationID:6458 | GeneID:6457 |
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Modification Date/Time: |
2006-02-09 08:08:15 |
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GeneProduct: | putative integrase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (22) Related to phage, transposon, or plasmid |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | gi|21108530|gb|AAM37139.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
Length=408
Score = 774 bits (1999), Expect = 0.0
Identities = 385/400 (96%), Positives = 393/400 (98%), Gaps = 0/400 (0%)
gi|48763608|ref|ZP_00268162.1| COG0582: Integrase [Rhodospirillum rubrum]
Length=402
Score = 739 bits (1909), Expect = 0.0
Identities = 367/396 (92%), Positives = 379/396 (95%), Gaps = 0/396 (0%)
gi|71485206|gb|EAO17757.1| Phage integrase [Nitrosomonas eutropha C71]
gi|30042153|gb|AAP17879.1| putative integrase [Shigella flexneri 2a str. 2457T]
Length=400
Score = 738 bits (1904), Expect = 0.0
Identities = 362/394 (91%), Positives = 383/394 (97%), Gaps = 0/394 (0%)
gi|23500115|ref|NP_699555.1| site-specific recombinase, phage integrase family [Brucella suis 1330]
Length=402
Score = 727 bits (1876), Expect = 0.0
Identities = 358/401 (89%), Positives = 383/401 (95%), Gaps = 2/401 (0%) |
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Structural Features: | cd00801, INT_P4, Bacteriophage P4 integrase.
CD-Length = 357 residues, 100.0% aligned
Score = 326 bits (836), Expect = 4e-90 |
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