ViewGene

Locus Name:
GeneID:
Location:

GeneID:6457
TrivialName: PA14_15350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15350
PAO1 Ortholog Locus:
Sequence Length:1203
Protein Length:400
Start: 1301126
Stop: 1302328
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM37139.1| (AE011866) phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
Identities = 385/400 (96%), Positives = 393/400 (98%)
Sequence:
ATGCTGACCGATACCAAGCTGCGTAACCTCAAGCCGAGGGACAAGCTATACAAGGAAAACGACCGTGACGGC
CTCTATGTGGCCGTCACGCCCGCCGGAGCGATCTCGTTCCGCTACAACTACTTGATCCACGGCCGGCAGGAG
ACCATCACCTTCGGCCGCTATGGCGTTGGCGGCATCACCCTTGCGGAAGCCCGCGAGCGGTTGGGCGAGGCC
AAGAAGATGATCGCGGCCGGGAAGTCGCCGGCCAAAGAGAAGGCGCGGGACAAGGCCCGCGTCAAGGATGCG
GAGACGTTCGGGGCGTGGGCGGAAAAGTGGCTGCGCGGCTACCAGATGGCTGACTCCACCCGCGACATGCGC
CGTTCAATCTACGAGCGCGAGCTGAAGCCTAAATTCAGCAACCAGAAGCTGGTGGAGATCACCCACGAGGAC
TTGCGGGCGCTGACCGATGCCATCGTGGAGCGCGGTGCACCGGCGACCGCAGTGCATGCTCGCGAGGTGATG
TTGCAGGTCTTTCGCTGGGCCATCGAGCGCGGCCAGAAGGTCGAGAACCCGGCAGAGCTGGTGCGGCCGACG
ACTATCGCCAAGTTCGAGCCGCGCGACCGTGCGCTGACGCCCGACGAGATCCGTCTGATGTATCAGTACATG
GAGCGCATCGGCACAACGCCATCCATTCGGGCTGCCGCCAAGTTGTTGCTGCTGACGATGGTGCGCAAGAGC
GAGCTGACCAACGCGACCTGGAGCGAGATCAACTTCAGCGAGGCGCTTTGGACCATCCCGAAGGAGCGGATG
AAGCGACGCAATCCGCACCTGGTGTTCCTGTCCCGGCAGGCGCTGGACATCTTCATTGCCCTCAAGACCTTT
GCCGGCGGATCGGACTACGTGTTGCCGTCGCGGTACGACTCGGACTTGCCCATGAGCAGCGCCACGCTCAAC
CAGGTGCTGACGCTGACGTATCGGCTGGCGCAGAAGGAAGGGAAGTCGCTCGCCAAGTTCGGGCCACATGAC
TTGCGGCGCACAGCCAGCACGTTGTTGCATGAGGCCGGCTACAACACGGACTGGATTGAGAAGTGCCTGGCG
CACGAGCAGCGAGGCGTCAGGGCCGTCTACAACAAGGCCGAGTACCGCGAGCAGCGGACGGCGATGTTGCAA
GACTGGGCGGACATGATCGACGAATGGACACTGAAGCGGCCGAAGGCGTAA
Translation:
MLTDTKLRNLKPRDKLYKENDRDGLYVAVTPAGAISFRYNYLIHGRQETITFGRYGVGGITLAEARERLGEA
KKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQMADSTRDMRRSIYERELKPKFSNQKLVEITHED
LRALTDAIVERGAPATAVHAREVMLQVFRWAIERGQKVENPAELVRPTTIAKFEPRDRALTPDEIRLMYQYM
ERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTF
AGGSDYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLA
HEQRGVRAVYNKAEYREQRTAMLQDWADMIDEWTLKRPKA*
AnnotationID:6458GeneID:6457
AnnotatorUID: diggins
Modification Date/Time: 2006-02-09 08:08:15
Gene Name:
Confidence Code:3
GeneProduct:putative integrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00801
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|21108530|gb|AAM37139.1|  phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
     Length=408
     Score =  774 bits (1999),  Expect = 0.0
     Identities = 385/400 (96%), Positives = 393/400 (98%), Gaps = 0/400 (0%)

gi|48763608|ref|ZP_00268162.1|  COG0582: Integrase [Rhodospirillum rubrum]
     Length=402
     Score =  739 bits (1909),  Expect = 0.0
     Identities = 367/396 (92%), Positives = 379/396 (95%), Gaps = 0/396 (0%)

gi|71485206|gb|EAO17757.1|  Phage integrase [Nitrosomonas eutropha C71]
gi|30042153|gb|AAP17879.1|  putative integrase [Shigella flexneri 2a str. 2457T]
     Length=400
     Score =  738 bits (1904),  Expect = 0.0
     Identities = 362/394 (91%), Positives = 383/394 (97%), Gaps = 0/394 (0%)

gi|23500115|ref|NP_699555.1|  site-specific recombinase, phage integrase family [Brucella suis 1330]
     Length=402
     Score =  727 bits (1876),  Expect = 0.0
     Identities = 358/401 (89%), Positives = 383/401 (95%), Gaps = 2/401 (0%)
Structural Features:
cd00801, INT_P4, Bacteriophage P4 integrase.  
             CD-Length = 357 residues, 100.0% aligned
             Score =  326 bits (836), Expect = 4e-90 	
Genomic Context:
Comment:
ReferenceID:12722
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30019
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6457

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199882 gb|AAM37139.1| (AE011866) phage-related integrase [Xanthomonas axonopodis pv. citri str. 306] 408 94.36 96.32 8 1999.0
199883 gb|AAP17879.1| (AE016986) putative integrase [Shigella flexneri 2a str. 2457T] 400 90.75 96.00 0 1902.0
199884 gb|AAN33560.1|AE014535_10 (AE014535) site-specific recombinase, phage integrase family [Brucella suis 1330] 402 89.05 95.27 2 1876.0
199886 dbj|BAB53138.1| (AP003010) CP4-like integrase [Mesorhizobium loti] 420 55.23 70.00 20 1175.0
199887 gb|AAM37036.1| (AE011855) phage-related integrase [Xanthomonas axonopodis pv. citri str. 306] 419 55.13 70.64 19 1162.0
GC ORFID: 49459How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3652811Stop: 3651609
Length: 1203
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTGACCGATACCAAGCTGCGTAACCTCAAGCCGAGGGACAAGCTATACAAGGAAAACGACCGTGACGGC
CTCTATGTGGCCGTCACGCCCGCCGGAGCGATCTCGTTCCGCTACAACTACTTGATCCACGGCCGGCAGGAG
ACCATCACCTTCGGCCGCTATGGCGTTGGCGGCATCACCCTTGCGGAAGCCCGCGAGCGGTTGGGCGAGGCC
AAGAAGATGATCGCGGCCGGGAAGTCGCCGGCCAAAGAGAAGGCGCGGGACAAGGCCCGCGTCAAGGATGCG
GAGACGTTCGGGGCGTGGGCGGAAAAGTGGCTGCGCGGCTACCAGATGGCTGACTCCACCCGCGACATGCGC
CGTTCAATCTACGAGCGCGAGCTGAAGCCTAAATTCAGCAACCAGAAGCTGGTGGAGATCACCCACGAGGAC
TTGCGGGCGCTGACCGATGCCATCGTGGAGCGCGGTGCACCGGCGACCGCAGTGCATGCTCGCGAGGTGATG
TTGCAGGTCTTTCGCTGGGCCATCGAGCGCGGCCAGAAGGTCGAGAACCCGGCAGAGCTGGTGCGGCCGACG
ACTATCGCCAAGTTCGAGCCGCGCGACCGTGCGCTGACGCCCGACGAGATCCGTCTGATGTATCAGTACATG
GAGCGCATCGGCACAACGCCATCCATTCGGGCTGCCGCCAAGTTGTTGCTGCTGACGATGGTGCGCAAGAGC
GAGCTGACCAACGCGACCTGGAGCGAGATCAACTTCAGCGAGGCGCTTTGGACCATCCCGAAGGAGCGGATG
AAGCGACGCAATCCGCACCTGGTGTTCCTGTCCCGGCAGGCGCTGGACATCTTCATTGCCCTCAAGACCTTT
GCCGGCGGATCGGACTACGTGTTGCCGTCGCGGTACGACTCGGACTTGCCCATGAGCAGCGCCACGCTCAAC
CAGGTGCTGACGCTGACGTATCGGCTGGCGCAGAAGGAAGGGAAGTCGCTCGCCAAGTTCGGGCCACATGAC
TTGCGGCGCACAGCCAGCACGTTGTTGCATGAGGCCGGCTACAACACGGACTGGATTGAGAAGTGCCTGGCG
CACGAGCAGCGAGGCGTCAGGGCCGTCTACAACAAGGCCGAGTACCGCGAGCAGCGGACGGCGATGTTGCAA
GACTGGGCGGACATGATCGACGAATGGACACTGAAGCGGCCGAAGGCGTAA