ViewGene
Locus Name:
GeneID:
Location:

GeneID:6456
TrivialName: PA14_15360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15360
PAO1 Ortholog Locus:
Sequence Length:981
Protein Length:326
Start: 1303723
Stop: 1302743
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGAAGAATGACCCAATCATCGTTATCTGGGAAGGTTGCGACCCCACCGTCTCGGAAGCCATCCGGCAGTTT
CAAGATCGCTGGCGGCCGTACTCCGCATCCTCGCGGCGCTATCCCATCGTGCGATTGATACAGGAACTGATC
GATCCCGCCGTGGCCGCCTACATGGCAGCCCTTCCAGTGCGCTATTCGGGCCACGTCCCCGGCGCCGGCACG
GGAGTGAGCTTCAGCGCGATCATTCGACTGGTGGGGCTTGATGCGATGGTTCGCTTGCAGCGGCAATTGCTG
CGCGCGTTCGTTCTCACGGAAGATCGACAGTCTGCGAGAGATCAGCGTTTTGTCGCAACGCTGGAATCACTG
ATCGAACTGGTGTGGGACTGTGCGTGCAAACGACCAGCCAAGTCACAGGTGCGCGACACCCGCCTGAATGGT
GAACGTCAGCAGGGCTTCTGCCGGTTTTGCGGAGCACTCGCCGAGTTGACCTCGTTCGCCGGTGGGAGCGAT
GACCCAAAGGCTGACGACCCCGAGGAGAAACTTCGACTCAGCAGCCTGTACTGCCTGGATCACCGGCCCAAA
TTGCCGAATGGCGCATGGAATCCCTCATACAGACAAGCAAGACGCTCACTCGCGCAGTTCGATCTCGAACTC
GCCAGGCTCAGCCAGCAGTGCGCAAAGCCAGCTACGCCTCAAGTGAAATCGGGCGATCAACTGGTTGACAGC
TACTTCTTCCACTACGTCGCCGGCCAAACCTTTCAGCCAGCAGACAAAGCGGAGTTGCGCAATCAAGCGCGG
CTCATGGTGGACTCGAAGCTGTCAGACCGCAAAAAACAGATGCTGATGCTCCAGTGGTCTGGGCTCAACCAG
TCGGAGATTGCGCGAAAGCTAGGTATAGAACGCCAAGCCGTATCGAAGGCACTGGCGTCGATCCCTGCGATG
TTCCACTTGAGTTCAAAGTCGCGCTCGCGGCGTCAACCAAATTGA
Translation:
MKNDPIIVIWEGCDPTVSEAIRQFQDRWRPYSASSRRYPIVRLIQELIDPAVAAYMAALPVRYSGHVPGAGT
GVSFSAIIRLVGLDAMVRLQRQLLRAFVLTEDRQSARDQRFVATLESLIELVWDCACKRPAKSQVRDTRLNG
ERQQGFCRFCGALAELTSFAGGSDDPKADDPEEKLRLSSLYCLDHRPKLPNGAWNPSYRQARRSLAQFDLEL
ARLSQQCAKPATPQVKSGDQLVDSYFFHYVAGQTFQPADKAELRNQARLMVDSKLSDRKKQMLMLQWSGLNQ
SEIARKLGIERQAVSKALASIPAMFHLSSKSRSRRQPN*
AnnotationID:6457GeneID:6456
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 14:02:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
weak match in the C-terminal end of PA14_15360: 
COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].
             CD-Length = 321 residues, only  14.3% aligned
             Score = 37.9 bits (88), Expect = 0.002






   
Genomic Context:






   
Comment:


















    ReferenceID:12720




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30017




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49458How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3650214Stop: 3651194

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAGAATGACCCAATCATCGTTATCTGGGAAGGTTGCGACCCCACCGTCTCGGAAGCCATCCGGCAGTTT 
CAAGATCGCTGGCGGCCGTACTCCGCATCCTCGCGGCGCTATCCCATCGTGCGATTGATACAGGAACTGATC 
GATCCCGCCGTGGCCGCCTACATGGCAGCCCTTCCAGTGCGCTATTCGGGCCACGTCCCCGGCGCCGGCACG 
GGAGTGAGCTTCAGCGCGATCATTCGACTGGTGGGGCTTGATGCGATGGTTCGCTTGCAGCGGCAATTGCTG 
CGCGCGTTCGTTCTCACGGAAGATCGACAGTCTGCGAGAGATCAGCGTTTTGTCGCAACGCTGGAATCACTG 
ATCGAACTGGTGTGGGACTGTGCGTGCAAACGACCAGCCAAGTCACAGGTGCGCGACACCCGCCTGAATGGT 
GAACGTCAGCAGGGCTTCTGCCGGTTTTGCGGAGCACTCGCCGAGTTGACCTCGTTCGCCGGTGGGAGCGAT 
GACCCAAAGGCTGACGACCCCGAGGAGAAACTTCGACTCAGCAGCCTGTACTGCCTGGATCACCGGCCCAAA 
TTGCCGAATGGCGCATGGAATCCCTCATACAGACAAGCAAGACGCTCACTCGCGCAGTTCGATCTCGAACTC 
GCCAGGCTCAGCCAGCAGTGCGCAAAGCCAGCTACGCCTCAAGTGAAATCGGGCGATCAACTGGTTGACAGC 
TACTTCTTCCACTACGTCGCCGGCCAAACCTTTCAGCCAGCAGACAAAGCGGAGTTGCGCAATCAAGCGCGG 
CTCATGGTGGACTCGAAGCTGTCAGACCGCAAAAAACAGATGCTGATGCTCCAGTGGTCTGGGCTCAACCAG 
TCGGAGATTGCGCGAAAGCTAGGTATAGAACGCCAAGCCGTATCGAAGGCACTGGCGTCGATCCCTGCGATG 
TTCCACTTGAGTTCAAAGTCGCGCTCGCGGCGTCAACCAAATTGA