ViewGene
Locus Name:
GeneID:
Location:

GeneID:6454
TrivialName: PA14_15410
AnnotatorUID:
Modification Date/Time:2006-08-22 20:08:33
LocusName:PA14_15410
PAO1 Ortholog Locus:
Sequence Length:201
Protein Length:66
Start: 1306231
Stop: 1306031
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN87567.1|AF457211_11 (AF457211) TnpA [Escherichia coli]
Identities = 64/66 (96%), Positives = 66/66 (100%)
Sequence:
GTGTTGTGGAACACGGTCTATCTGGAACGGGCTGCGCACGCGCTGCGTGGCAACGGCCATGCCGTTGATGAC
GCGCTGTTGCAGTACCTGTCGCCGCTCGGTTGGGAGCACATCAACCTCACCGGCGATTACCTCTGGCGCAGC
AGCGCCAAGATCGGCGCGGGCAAGTTCAGGCCGCTACGACCGCTGCAACCGGCTTAG
Translation:
MLWNTVYLERAAHALRGNGHAVDDALLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA*
AnnotationID:6455GeneID:6454
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 15:03:43
Gene Name:
Confidence Code:4
GeneProduct:non-functional transposase fragment
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Matches to C-terminus of Subject sequences:
gi|32815770|gb|AAP88287.1|  Tn3 family transposase [Delftia acidovorans]
     Length=989
     Score =  140 bits (354),  Expect = 9e-33
     Identities = 65/66 (98%), Positives = 66/66 (100%), Gaps = 0/66 (0%)

gi|68526495|gb|EAN49467.1|  Transposase Tn3 [Ralstonia metallidurans CH34]
gi|56410362|emb|CAI30244.1|  hypothetical transposase for transposon Tn4378 [Ralstonia metallidurans  CH34]
     Length=989
     Score =  140 bits (354),  Expect = 9e-33
     Identities = 65/66 (98%), Positives = 66/66 (100%), Gaps = 0/66 (0%)






 
Structural Features:
Match to the END of pfam01526, Transposase_7.
             CD-Length = 968 residues, only   4.5% aligned
             Score = 71.0 bits (174), Expect = 3e-14






   
Genomic Context:






   
Comment:
Genes 6453 (PA14_15420) and 6454 (PA14_15410) align with the very beginning and end (respectively) 
of putative or known transposases, as well as pfam01526 (Transposase_7).  These short fragments are 
likely non-functional.


















    ReferenceID:16224




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31787




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6454_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6454
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199846
                           emb|CAD19582.1|
                           (AJ422226) TnpA transposase [Pseudomonas fluorescens]
                           115
                           56.52
                           57.39
                           49
                           354.0
     

     
     
199871
                           emb|CAC04515.1|
                           (AJ293846) transposase [Klebsiella pneumoniae]
                           170
                           26.47
                           28.82
                           113
                           253.0
     

     
     
199847
                           emb|CAA70408.1|
                           (Y09209) transposase [Pseudomonas fluorescens]
                           255
                           25.49
                           25.88
                           189
                           354.0
     

     
     
199866
                           emb|CAA71190.1|
                           (Y10103) site-specific recombinase [Escherichia coli]
                           232
                           22.84
                           24.56
                           166
                           295.0
     

     
     
199850
                           gb|AAK66553.1|
                           (AF380359) transposase [Halomonas sp. C6]
                           568
                           11.44
                           11.61
                           502
                           354.0
     

     






      

          
GC ORFID: 49456How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3647706Stop: 3647906

          
Length: 201


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGTTGTGGAACACGGTCTATCTGGAACGGGCTGCGCACGCGCTGCGTGGCAACGGCCATGCCGTTGATGAC 
GCGCTGTTGCAGTACCTGTCGCCGCTCGGTTGGGAGCACATCAACCTCACCGGCGATTACCTCTGGCGCAGC 
AGCGCCAAGATCGGCGCGGGCAAGTTCAGGCCGCTACGACCGCTGCAACCGGCTTAG