ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6453

TrivialName: PA14_15420

AnnotatorUID:

Modification Date/Time: 2006-08-22 20:08:33

LocusName: PA14_15420

PAO1 Ortholog Locus:

Sequence Length: 165

Protein Length: 54

Start: 1306407

Stop: 1306243

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAC14696.1| (Y17719) transposase [Pseudomonas sp.] Identities = 47/53 (88%), Positives = 49/53 (92%)

Sequence:

ATGCCACGTCGTTCAATCCTGTCCGCCGCCGAGCGCGAAAGCCTGCTGGCGTTGCCGGACACCAAGGATGAG
TTGATCCGTCACTACACGTTCAGCGAAACCGACCTCTCCATCATCCGGCAGCGGCGCGGCCCGGCTACCGGG
CTAGCGGCCTCAATCTGGTAA

Translation:

MPRRSILSAAERESLLALPDTKDELIRHYTFSETDLSIIRQRRGPATGLAASIW*

AnnotationID:6454 GeneID:6453

AnnotatorUID: danlee

Modification Date/Time: 2005-10-17 15:03:53

Gene Name:

Confidence Code: 4

GeneProduct: non-functional transposase fragment

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (22) Related to phage, transposon, or plasmid

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Part of a transposon carrying mercury resistance

Homology:

Matches to N-terminus of Subject sequences:
gi|11071869|emb|CAC14696.1|  transposase [Pseudomonas sp.]
     Length=459
     Score = 93.6 bits (231),  Expect = 2e-18
     Identities = 47/53 (88%), Positives = 49/53 (92%), Gaps = 0/53 (0%)

gi|56068718|emb|CAI11280.1|  transposase [Ralstonia metallidurans CH34]
     Length=988
     Score = 93.6 bits (231),  Expect = 2e-18
     Identities = 47/53 (88%), Positives = 49/53 (92%), Gaps = 0/53 (0%)

gi|67543460|ref|ZP_00421392.1|  Transposase Tn3 [Burkholderia vietnamiensis G4]
    Length=989
     Score = 92.0 bits (227),  Expect = 5e-18
     Identities = 46/53 (86%), Positives = 49/53 (92%), Gaps = 0/53 (0%)

Structural Features:

Match to the BEGINNING of pfam01526, Transposase_7, Transposase. 
             CD-Length = 968 residues, only   5.1% aligned
             Score = 47.2 bits (112), Expect = 4e-07

Genomic Context:

Adjacent to a mercury resistance gene cluster

Comment:

Genes 6453 (PA14_15420) and 6454 (PA14_15410) align with the very beginning and end (respectively) 
of putative or known transposases, as well as pfam01526 (Transposase_7).  These short fragments are 
likely non-functional.

ReferenceID:12715

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16954

Author/Investigator(s): Mindlin,S., Kholodii,G., Gorlenko,Z., Minakhina,S., Minakhin,L., Kalyaeva,E., Kopteva,A Petrova,M., Yurieva,O. and Nikiforov,V

Title: Mercury resistance transposons of gram-negative environmental bacteria and their classification

PubMed: 11763242

MedLine: 21604134

Source:

JOURNAL   Res. Microbiol. 152 (9), 811-822 (2001)

Reference Type: Journal

Data:

URL:

ReferenceID:30011

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49455`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3647530`	Stop: `3647694`
Length: `165`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
`ATGCCACGTCGTTCAATCCTGTCCGCCGCCGAGCGCGAAAGCCTGCTGGCGTTGCCGGACACCAAGGATGAG TTGATCCGTCACTACACGTTCAGCGAAACCGACCTCTCCATCATCCGGCAGCGGCGCGGCCCGGCTACCGGG CTAGCGGCCTCAATCTGGTAA`