ViewGene

Locus Name:
GeneID:
Location:

GeneID:6452
TrivialName: PA14_15430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15430
PAO1 Ortholog Locus:
Sequence Length:561
Protein Length:186
Start: 1306970
Stop: 1306410
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD97547.1| (AJ564903) putative resolvase [uncultured bacterium]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
TTGCACGGTCAGCGCATCGGTTACGTCCGCGTCAGCAGCTTCGACCAGAACCCAGAACGGCAGCTCGAACAG
ATCCAGGTGGATAAAGTGTTCACCGACAAGGCGTCGGGCAAGGACACACGGCGGCCCGAACTGGAACGGCTG
CTCGCCTTCGTGCGCGAAGGCGACACGGTCGTGGTGCACAGCATGGATCGTCTGGCGCGCAACCTCGACGAC
CTGCGCCGCCTGGTGCAGGGCCTCACCCAGCGCGGCGTACGCATCGAGTTCCTTAAGGAGCATTTGACCTTC
ACCGGCGAGGACTCGCCGATGGCGAACCTGATGCTGTCGGTAATGGGCGCGTTCGCCGAGTTCGAACGCGCC
TTGATCCGCGAGCGGCAGCGCGAGGGCATCGCGCTCGCCAAGCAGCGCGGGGCCTACCGTGGCAGGAAGAAA
TCCCTGTCGTCTGAGCGTATTGCCGAACTGCGCCAACGTGTCGAGGCTGGCGAGCAAAAGACCAAGCTGGCT
CGTGAATTCGGAATCAGTCGCGAAACCCTGTATCAATACTTGAGAACGGATCAGTAA
Translation:
MHGQRIGYVRVSSFDQNPERQLEQIQVDKVFTDKASGKDTRRPELERLLAFVREGDTVVVHSMDRLARNLDD
LRRLVQGLTQRGVRIEFLKEHLTFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKK
SLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ*
AnnotationID:6453GeneID:6452
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 16:04:37
Gene Name:
Confidence Code:3
GeneProduct:putative resolvase, essential for transposition
Cell Localization:()
Synonyms:tnpR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00239
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68529558|gb|EAN52521.1|  Resolvase, N-terminal:Resolvase helix-turn-helix region [Ralstonia metallidurans CH34]
gi|31795173|ref|NP_858031.1|  putative resolvase [uncultured bacterium]
     Length=186
     Score =  360 bits (925),  Expect = 1e-98
     Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%)

gi|30524989|emb|CAD56836.1|  tnpR [Pseudomonas aeruginosa]
     Length=185
     Score =  358 bits (920),  Expect = 4e-98
     Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%)

gi|11071868|emb|CAC14695.1|  resolvase [Pseudomonas sp.]
     Length=186
     Score =  358 bits (919),  Expect = 5e-98
     Identities = 184/186 (98%), Positives = 186/186 (100%), Gaps = 0/186 (0%)

gi|33086393|emb|CAD80248.1|  Resolvase [Pseudomonas aeruginosa]
     Length=185
     Score =  352 bits (903),  Expect = 3e-96
     Identities = 184/185 (99%), Positives = 184/185 (99%), Gaps = 1/185 (0%)
Structural Features:
pfam00239, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family (this family) 
contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the 
C-terminal helix-turn-helix domain of resolvase - see pfam02796.
             CD-Length = 139 residues,  99.3% aligned
             Score =  124 bits (313), Expect = 6e-30

COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair].
             CD-Length = 222 residues,  88.3% aligned
             Score = 89.8 bits (222), Expect = 2e-19
Genomic Context:
Comment:
Associated with transposons identified in strains resistant to mercury or multiple antibiotics, in some 
cases producint metallo-beta-lactamases.
ReferenceID:16222
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16953
Author/Investigator(s): Walsh,T.R., Toleman,M.A., Hryniewicz,W., Bennett,P.M. and Jones,R.N.
Title: Evolution of an integron carrying blaVIM-2 in Eastern Europe: report from the SENTRY Antimicrobial Surveillance Program
PubMed: 12805257
MedLine: 22716161
Source:
JOURNAL   J. Antimicrob. Chemother. 52 (1), 116-119 (2003)
Reference Type:Journal
Data:
URL:
ReferenceID:30009
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38226
Author/Investigator(s): Mindlin,S., Kholodii,G., Gorlenko,Z., Minakhina,S., Minakhin,L., Kalyaeva,E., Kopteva,A., Petrova,M., Yurieva,O. and Nikiforov,V.
Title: Mercury resistance transposons of gram-negative environmental bacteria and their classification
PubMed: 11763242
MedLine:
Source:
Res. Microbiol. 152 (9), 811-822 (2001)
Reference Type:Journal
Data:
URL:
ReferenceID:38227
Author/Investigator(s): Toleman,M.A., Biedenbach,D., Bennett,D., Jones,R.N. and Walsh,T.R.
Title: Genetic characterization of a novel metallo-beta-lactamase gene, blaIMP-13, harboured by a novel Tn5051-type transposon disseminating carbapenemase genes in Europe: report from the SENTRY worldwide antimicrobial surveillance programme
PubMed: 12951335
MedLine:
Source:
J. Antimicrob. Chemother. 52 (4), 583-590 (2003)
Reference Type:Journal
Data:
URL:
ReferenceID:38228
Author/Investigator(s): Pagani,L., Colinon,C., Migliavacca,R., Labonia,M., Docquier,J.D., Nucleo,E., Spalla,M., Li Bergoli,M. and Rossolini,G.M.
Title: Nosocomial Outbreak Caused by Multidrug-Resistant Pseudomonas aeruginosa Producing IMP-13 Metallo-{beta}-Lactamase
PubMed: 16081918
MedLine:
Source:
J. Clin. Microbiol. 43 (8), 3824-3828 (2005)
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:6452

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199753 emb|CAD97547.1| (AJ564903) putative resolvase [uncultured bacterium] 186 99.46 99.99 0 922.0
199754 emb|CAC14695.1| (Y17719) resolvase [Pseudomonas sp.] 186 99.46 99.99 0 921.0
199755 emb|CAD56836.1| (AJ515707) tnpR [Pseudomonas aeruginosa] 186 98.92 99.46 1 917.0
199756 emb|CAD80248.1| (AJ550807) Resolvase [Pseudomonas aeruginosa] 186 98.38 98.92 1 901.0
199757 emb|CAD24362.1| (AJ431260) TnpR protein [uncultured bacterium] 186 89.24 96.23 0 844.0
GC ORFID: 49454How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3646967Stop: 3647527
Length: 561
Start Codon: TTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCACGGTCAGCGCATCGGTTACGTCCGCGTCAGCAGCTTCGACCAGAACCCAGAACGGCAGCTCGAACAG
ATCCAGGTGGATAAAGTGTTCACCGACAAGGCGTCGGGCAAGGACACACGGCGGCCCGAACTGGAACGGCTG
CTCGCCTTCGTGCGCGAAGGCGACACGGTCGTGGTGCACAGCATGGATCGTCTGGCGCGCAACCTCGACGAC
CTGCGCCGCCTGGTGCAGGGCCTCACCCAGCGCGGCGTACGCATCGAGTTCCTTAAGGAGCATTTGACCTTC
ACCGGCGAGGACTCGCCGATGGCGAACCTGATGCTGTCGGTAATGGGCGCGTTCGCCGAGTTCGAACGCGCC
TTGATCCGCGAGCGGCAGCGCGAGGGCATCGCGCTCGCCAAGCAGCGCGGGGCCTACCGTGGCAGGAAGAAA
TCCCTGTCGTCTGAGCGTATTGCCGAACTGCGCCAACGTGTCGAGGCTGGCGAGCAAAAGACCAAGCTGGCT
CGTGAATTCGGAATCAGTCGCGAAACCCTGTATCAATACTTGAGAACGGATCAGTAA