ViewGene

Locus Name:
GeneID:
Location:

GeneID:645
TrivialName: PA14_13410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13410
PAO1 Ortholog Locus:PA3903
Sequence Length:1584
Protein Length:527
Start: 1153683
Stop: 1152100
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07290.1|AE004807_9 (AE004807) peptide chain release factor 3 [Pseudomonas aeruginosa PAO1]
Identities = 527/527 (100%), Positives = 527/527 (100%)
Sequence:
ATGACCACTCAGGCCGCCGAAGTCGCGAAGCGCCGTACCTTCGCGATCATTTCCCACCCCGACGCCGGTAAG
ACCACCATCACCGAGAAGCTCCTGCTGATGGGCAAGGCGATCGCCGTCGCCGGTACCGTGAAGTCGCGCAAG
TCCGACCGCCACGCCACGTCCGACTGGATGGAGATGGAAAAGCAGCGCGGCATCTCCATCACCACCTCGGTG
ATGCAGTTCCCCTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCCGAAGAC
ACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATGGTGCTCGACGGCGGCAAGGGCGTCGAACCGCGG
ACCATCGCCCTGATGGAAGTCTGCCGGCTGCGTGACACGCCCATCGTCAGCTTCATCAACAAGCTCGACCGC
GACATCCGCGACCCCATCGAGCTGCTCGACGAGATCGAGGCGGTGCTGAAGATCAAGGCCGCGCCGATCACC
TGGCCGATCGGCTGCTACAAGGACTTCAAGGGCGTCTACCACCTGGCCGACGACAGGATCATCGTCTACGTC
CCGGGCCACGGCCACGAGCGCATCGAGACCAAGGTCATCGAAAAGCTCGACTCCGACGAAGCCCGCGCCCAC
CTCGGCGATCTCTACGACAATTTCGTCGAGGAGCTGGAGCTGGTGCAGGGCGCCTGCCACGAATTCGACAAG
GACGCCTTCCTCAAGGGCGAGATGACCCCGGTGTTCTTCGGCACCGCGCTGGGCAACTTCGGCGTCGACCAG
GTCCTCGACTGCATCGTCGACTGGGCGCCGCAGCCGCTGTCGCGCGCCACCCACGAACGCAGCGTGGAGCCG
ACCGAGGAGAAGTTCTCCGGCTTCGTGTTCAAGATCCAGGCGAACATGGATCCCAAGCACCGCGACCGCATC
GCCTTCATGCGCATCTGCTCGGGCAAGTACGAGAAAGGCATGAAGATGCGCCACGTGCGCCTGGGCAAGGAC
GTGAAGATCGCCGACGCGCTGACCTTCTTCTCCTCCGAGCGCGAGCAACTGGAAGAGGCCTATGCCGGCGAC
ATCATCGGCCTGCACAACCACGGCACCATCCAGATCGGCGACACCTTCAGCGAAGGCGAGAACTTCGGTTTC
ACCGGCATCCCGCACTTCGCCCCGGAACTGTTCCGCCGCGTGCGCCTGAAAGACCCGCTGAAGTCCAAGCAG
TTGCGCCAGGGCCTGCAGGAACTGGCCGAGGAAGGTGCGACCCAGGTGTTCTTCCCCGAGCGCAACAACGAC
ATCATCCTCGGTGCGGTGGGCGTGCTGCAGTTCGACGTGGTCGCCAGCCGCCTGAAGGAGGAATACAAGGTC
GAGTGCGCCTACGAGGCGATCAACGTCTGGTCGGCACGCTGGATCGAGTGCGACGACGAGAAGAAGCTCAAG
GAGTTCAAGGACAAGGCCTTCGAGAACCTCTCCGTGGACGGCGGCGGGCACCTCACCTACCTGGCGCCGACC
CGCGTCAACCTCAGCCTGATGGAAGAACGCTGGCCGGACATCCGCTTCCGCGCGACGCGCGAGCATCACTGA
Translation:
MTTQAAEVAKRRTFAIISHPDAGKTTITEKLLLMGKAIAVAGTVKSRKSDRHATSDWMEMEKQRGISITTSV
MQFPYREHMINLLDTPGHEDFSEDTYRTLTAVDSALMVLDGGKGVEPRTIALMEVCRLRDTPIVSFINKLDR
DIRDPIELLDEIEAVLKIKAAPITWPIGCYKDFKGVYHLADDRIIVYVPGHGHERIETKVIEKLDSDEARAH
LGDLYDNFVEELELVQGACHEFDKDAFLKGEMTPVFFGTALGNFGVDQVLDCIVDWAPQPLSRATHERSVEP
TEEKFSGFVFKIQANMDPKHRDRIAFMRICSGKYEKGMKMRHVRLGKDVKIADALTFFSSEREQLEEAYAGD
IIGLHNHGTIQIGDTFSEGENFGFTGIPHFAPELFRRVRLKDPLKSKQLRQGLQELAEEGATQVFFPERNND
IILGAVGVLQFDVVASRLKEEYKVECAYEAINVWSARWIECDDEKKLKEFKDKAFENLSVDGGGHLTYLAPT
RVNLSLMEERWPDIRFRATREHH*
AnnotationID:654GeneID:645
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 18:06:52
Gene Name:
Confidence Code:2
GeneProduct:peptide chain release factor 3
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4108,COG0480,KOG0465,KOG0464
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1293
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17091
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:645_CDD.html
URL:
ReferenceID:18435
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:645

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1093 PA3903_tr translation of PA3903 527 99.99 99.99 0 2756.0
41523 gb|AAG07290.1|AE004807_9 (AE004807) peptide chain release factor 3 [Pseudomonas aeruginosa PAO1] 527 99.99 99.99 0 2756.0
41524 gb|AAN66497.1|AE016278_8 (AE016777) peptide chain release factor 3 [Pseudomonas putida KT2440] 527 89.56 95.25 0 2524.0
41525 gb|AAO58025.1| (AE016872) peptide chain release factor 3 [Pseudomonas syringae pv. tomato str. DC3000] 527 88.80 95.25 0 2496.0
41527 gb|AAC23380.1| (U32846) peptide chain release factor 3 (prfC) [Haemophilus influenzae Rd] [Haemophilus influenzae Rd KW20] 528 70.07 81.06 2 1919.0
GC ORFID: 43647How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3903Glimmer Score:
Start: 3800255Stop: 3801838
Length: 1584
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3903 translation of PA3903Homolog Bit Score 1066.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5630 (ORF: BLASTX 974.0), t_PA3903 (ORF: GLIMMER)
GC ORF Sequence
ATGACCACTCAGGCCGCCGAAGTCGCGAAGCGCCGTACCTTCGCGATCATTTCCCACCCCGACGCCGGTAAG
ACCACCATCACCGAGAAGCTCCTGCTGATGGGCAAGGCGATCGCCGTCGCCGGTACCGTGAAGTCGCGCAAG
TCCGACCGCCACGCCACGTCCGACTGGATGGAGATGGAAAAGCAGCGCGGCATCTCCATCACCACCTCGGTG
ATGCAGTTCCCCTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCCGAAGAC
ACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATGGTGCTCGACGGCGGCAAGGGCGTCGAACCGCGG
ACCATCGCCCTGATGGAAGTCTGCCGGCTGCGTGACACGCCCATCGTCAGCTTCATCAACAAGCTCGACCGC
GACATCCGCGACCCCATCGAGCTGCTCGACGAGATCGAGGCGGTGCTGAAGATCAAGGCCGCGCCGATCACC
TGGCCGATCGGCTGCTACAAGGACTTCAAGGGCGTCTACCACCTGGCCGACGACAGGATCATCGTCTACGTC
CCGGGCCACGGCCACGAGCGCATCGAGACCAAGGTCATCGAAAAGCTCGACTCCGACGAAGCCCGCGCCCAC
CTCGGCGATCTCTACGACAATTTCGTCGAGGAGCTGGAGCTGGTGCAGGGCGCCTGCCACGAATTCGACAAG
GACGCCTTCCTCAAGGGCGAGATGACCCCGGTGTTCTTCGGCACCGCGCTGGGCAACTTCGGCGTCGACCAG
GTCCTCGACTGCATCGTCGACTGGGCGCCGCAGCCGCTGTCGCGCGCCACCCACGAACGCAGCGTGGAGCCG
ACCGAGGAGAAGTTCTCCGGCTTCGTGTTCAAGATCCAGGCGAACATGGATCCCAAGCACCGCGACCGCATC
GCCTTCATGCGCATCTGCTCGGGCAAGTACGAGAAAGGCATGAAGATGCGCCACGTGCGCCTGGGCAAGGAC
GTGAAGATCGCCGACGCGCTGACCTTCTTCTCCTCCGAGCGCGAGCAACTGGAAGAGGCCTATGCCGGCGAC
ATCATCGGCCTGCACAACCACGGCACCATCCAGATCGGCGACACCTTCAGCGAAGGCGAGAACTTCGGTTTC
ACCGGCATCCCGCACTTCGCCCCGGAACTGTTCCGCCGCGTGCGCCTGAAAGACCCGCTGAAGTCCAAGCAG
TTGCGCCAGGGCCTGCAGGAACTGGCCGAGGAAGGTGCGACCCAGGTGTTCTTCCCCGAGCGCAACAACGAC
ATCATCCTCGGTGCGGTGGGCGTGCTGCAGTTCGACGTGGTCGCCAGCCGCCTGAAGGAGGAATACAAGGTC
GAGTGCGCCTACGAGGCGATCAACGTCTGGTCGGCACGCTGGATCGAGTGCGACGACGAGAAGAAGCTCAAG
GAGTTCAAGGACAAGGCCTTCGAGAACCTCTCCGTGGACGGCGGCGGGCACCTCACCTACCTGGCGCCGACC
CGCGTCAACCTCAGCCTGATGGAAGAACGCTGGCCGGACATCCGCTTCCGCGCGACGCGCGAGCATCACTGA