ViewGene

Locus Name:
GeneID:
Location:

GeneID:6448
TrivialName: PA14_15470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15470
PAO1 Ortholog Locus:
Sequence Length:276
Protein Length:91
Start: 1310735
Stop: 1310460
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD23790.1|AF120967_1 (AF120967) periplasmic mercuric ion binding protein [Pseudomonas aeruginosa]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
ATGAAGAAACTGTTTGCCTCCCTCGCCCTCGCCGCCGTTGTTGCCCCCGTCTGGGCCGCCACCCAGACCGTC
ACGCTGTCCGTACCGGGCATGACCTGCTCCGCCTGCCCGATCACTGTCAAGAAGGCGATTTCCAAGGTCGAA
GGCGTCAGCAAAGTTGACGTGACTTTCGAGACACGCCAAGCGGTCGTCACCTTCGACGATGCCAAGACCAGC
GTGCAGAAGCTGACCAAGGCAACCGCAGACGCGGGCTATCCGTCCAGCGTCAAGCAGTGA
Translation:
MKKLFASLALAAVVAPVWAATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTS
VQKLTKATADAGYPSSVKQ*
AnnotationID:6449GeneID:6448
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 17:05:53
Gene Name:merP
Confidence Code:2
GeneProduct:Periplasmic mercuric ion binding protein, MerP
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00371, pfam00403
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68558980|ref|ZP_00598316.1|  Heavy metal transport/detoxification protein [Ralstonia metallidurans CH34]
gi|49176912|ref|YP_025415.1|  periplasmic mercury ion binding protein [Ralstonia eutropha JMP134]
gi|39777492|gb|AAR31067.1|  periplasmic mercury ion binding protein [Wautersia eutropha]
gi|72384298|ref|YP_293651.1|  Mercuric transport protein periplasmic component [Ralstonia eutropha JMP134]
gi|31746422|emb|CAD97552.1|  periplasmic mercury ion binding protein [uncultured bacterium]
gi|4572404|gb|AAD23790.1|  periplasmic mercuric ion binding protein [Pseudomonas aeruginosa]
gi|4572400|gb|AAD23787.1|  periplasmic mercuric ion binding protein [Stenotrophomonas maltophilia]
gi|2944141|gb|AAC38219.1|  MerP [Pseudomonas stutzeri]
     Length=91
     Score =  176 bits (446),  Expect = 2e-43
     Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%)

gi|43717|emb|CAA77322.1|  merP protein [Pseudomonas aeruginosa]
gi|154900|gb|AAA27434.1|  MerC [Pseudomonas aeruginosa]
gi|127008|sp|P04131|MERP_PSEAE  Mercuric transport protein periplasmic component precursor 
(Periplasmic mercury ion binding protein) (Mercury scavenger protein)
     Length=91
     Score =  174 bits (442),  Expect = 6e-43
     Identities = 90/91 (98%), Positives = 91/91 (100%), Gaps = 0/91 (0%)
Structural Features:
cd00371, HMA, Heavy-metal-associated domain (HMA).
             CD-Length = 63 residues, 100.0% aligned
             Score = 59.5 bits (144), Expect = 1e-10

pfam00403, HMA, Heavy-metal-associated domain.
             CD-Length = 66 residues, 100.0% aligned
             Score = 51.8 bits (124), Expect = 2e-08
Genomic Context:
Comment:
ReferenceID:12705
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30001
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6448

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199327 emb|CAD97552.1| (AJ564903) periplasmic mercury ion binding protein [uncultured bacterium] 91 99.99 99.99 0 446.0
199328 gb|AAD23790.1|AF120967_1 (AF120967) periplasmic mercuric ion binding protein [Pseudomonas aeruginosa] 91 99.99 99.99 0 446.0
199329 gb|AAD23787.1|AF120966_1 (AF120966) periplasmic mercuric ion binding protein [Stenotrophomonas maltophilia] 91 99.99 99.99 0 446.0
199330 gb|AAC38219.1| (U80214) MerP [Pseudomonas stutzeri] 91 99.99 99.99 0 446.0
199331 gb|AAA27434.1| (K02503) MerC [Pseudomonas aeruginosa] 91 98.90 99.99 0 442.0
GC ORFID: 49450How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3643202Stop: 3643477
Length: 276
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAGAAACTGTTTGCCTCCCTCGCCCTCGCCGCCGTTGTTGCCCCCGTCTGGGCCGCCACCCAGACCGTC
ACGCTGTCCGTACCGGGCATGACCTGCTCCGCCTGCCCGATCACTGTCAAGAAGGCGATTTCCAAGGTCGAA
GGCGTCAGCAAAGTTGACGTGACTTTCGAGACACGCCAAGCGGTCGTCACCTTCGACGATGCCAAGACCAGC
GTGCAGAAGCTGACCAAGGCAACCGCAGACGCGGGCTATCCGTCCAGCGTCAAGCAGTGA