ViewGene

Locus Name:
GeneID:
Location:

GeneID:6446
TrivialName: PA14_15510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15510
PAO1 Ortholog Locus:
Sequence Length:372
Protein Length:123
Start: 1312655
Stop: 1313026
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD24398.1| (AJ431260) TraJ protein [uncultured bacterium]
Identities = 102/122 (83%), Positives = 110/122 (90%)
Sequence:
ATGGACGACGAGAAGAGAGTCACGCGGAAGAGCAGCCCGCCCATCAAGGTGTACTGCCTTCCCGAAGAGCGT
GAACTGATCGAGGCGAACGCCAAGAGGGCGGGGATCAGCGTTGCGCGCTACCTGCGCGACGTGGGCCAGGGC
TACCAGATCAAGGGCGTCATGGATTACGAGTACGTGCGCGAGCTGGTGCGCGTGAATGGCGACCTTGGCCGG
CTAGGCGGCTTGCTCAAGCTTTGGCTCACCGACGACCCGCGCACAGCCCGCTTCGGCGATGACACGATCCTC
GCTCTGCTGGGTCGGATTGAGGCCACCCAGGACGAAATGAGCCGGCTCATGAAGTCGGTAGTGCAGCCGAGG
GTCGAATCATGA
Translation:
MDDEKRVTRKSSPPIKVYCLPEERELIEANAKRAGISVARYLRDVGQGYQIKGVMDYEYVRELVRVNGDLGR
LGGLLKLWLTDDPRTARFGDDTILALLGRIEATQDEMSRLMKSVVQPRVES*
AnnotationID:6447GeneID:6446
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 10:10:59
Gene Name:traJ
Confidence Code:2
GeneProduct:oriT-binding protein, TraJ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|19352415|ref|NP_598173.1|  TraJ protein [uncultured bacterium]
     Length=123
     Score =  202 bits (513),  Expect = 3e-51
     Identities = 102/122 (83%), Positives = 110/122 (90%), Gaps = 0/122 (0%)

gi|73746025|ref|YP_302617.1|  TraJ [Sphingomonas sp. A1]
     Length=123
     Score =  201 bits (512),  Expect = 4e-51
     Identities = 102/122 (83%), Positives = 110/122 (90%), Gaps = 0/122 (0%)

gi|58416275|emb|CAI47871.1|  conjugal transfer protein TraJ [Achromobacter xylosoxidans]
     Length=123
     Score =  197 bits (501),  Expect = 8e-50
     Identities = 99/122 (81%), Positives = 109/122 (89%), Gaps = 0/122 (0%)

gi|77734016|emb|CAI10780.1|  oriT binding protein [IncP-1beta multiresistance plasmid pB8]
gi|72384329|ref|YP_293682.1|  TraJ protein of DNA transfer system [Ralstonia eutropha JMP134]
gi|32455805|ref|NP_862457.1|  TraJ protein [Pseudomonas sp. ADP]
gi|62739049|gb|AAC64478.2|  TraJ [Enterobacter aerogenes]
gi|72607200|gb|EAO43165.1|  putative plasmid conjugal transfer protein [Burkholderia ambifaria AMMD]
gi|13937442|gb|AAK50253.1|  TraJ protein [Pseudomonas sp. ADP]
gi|62765884|ref|NP_044275.2|  TraJ [Enterobacter aerogenes]
gi|34500530|ref|NP_904301.1|  TraJ [Delftia acidovorans]
     Length=124
     Score =  186 bits (471),  Expect = 3e-46
     Identities = 93/121 (76%), Positives = 106/121 (87%), Gaps = 0/121 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:12701
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16949
Author/Investigator(s): Tauch,A., Schluter,A., Bischoff,N., Goesmann,A., Meyer,F. and Puhler,A.
Title: The 79,370-bp conjugative plasmid pB4 consists of an IncP-1beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite
PubMed: 12589432
MedLine: 22477408
Source:
JOURNAL   Mol. Genet. Genomics 268 (5), 570-584 (2003)
Reference Type:Journal
Data:
URL:
ReferenceID:29997
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6446

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199232 emb|CAD24398.1| (AJ431260) TraJ protein [uncultured bacterium] 123 82.92 89.43 0 512.0
199233 gb|AAK50253.1|U66917_20 (U66917) TraJ protein [Pseudomonas sp. ADP] 124 75.00 85.48 1 468.0
199234 emb|CAD97517.1| (AJ564903) oriT binding protein [uncultured bacterium] 124 75.00 85.48 1 468.0
199235 dbj|BAC82024.1| (AB063332) TraJ [Delftia acidovorans] 124 75.00 85.48 1 468.0
199236 emb|CAA38331.1| (X54458) traJ [Escherichia coli] 130 73.84 81.53 7 455.0
GC ORFID: 49448How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3641282Stop: 3640911
Length: 372
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGACGACGAGAAGAGAGTCACGCGGAAGAGCAGCCCGCCCATCAAGGTGTACTGCCTTCCCGAAGAGCGT
GAACTGATCGAGGCGAACGCCAAGAGGGCGGGGATCAGCGTTGCGCGCTACCTGCGCGACGTGGGCCAGGGC
TACCAGATCAAGGGCGTCATGGATTACGAGTACGTGCGCGAGCTGGTGCGCGTGAATGGCGACCTTGGCCGG
CTAGGCGGCTTGCTCAAGCTTTGGCTCACCGACGACCCGCGCACAGCCCGCTTCGGCGATGACACGATCCTC
GCTCTGCTGGGTCGGATTGAGGCCACCCAGGACGAAATGAGCCGGCTCATGAAGTCGGTAGTGCAGCCGAGG
GTCGAATCATGA