ViewGene

Locus Name:
GeneID:
Location:

GeneID:6444
TrivialName: PA14_15530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15530
PAO1 Ortholog Locus:
Sequence Length:276
Protein Length:91
Start: 1314094
Stop: 1314369
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK38011.1| (AF305549) entry exclusion protein TrbK [Comamonas testosteroni]
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Sequence:
ATGAAACCGACGATGCTGCTTGCCGGCCTCGTGGTGGCGCTGCTGGCCGGCTGCGACAGCAAGCCGGCCACC
CAGGCCATGCCCGAGGTCAATGACGCGAACTGCCAGATCGAGAAGATCAAAAAGATCGAGGACAAGGCGACG
CGCGAAACTTTCGCCGGGCTGTGCTCGCGCCGGTCGCGGACCGGCGGCGGCATCGCCCCGACCGAGAAGCCG
ATGAACTGGCTGGAACTGGCCGACCCGAAAGACTCGAAGGGGCAGGAGGCGAAGCCATGA
Translation:
MKPTMLLAGLVVALLAGCDSKPATQAMPEVNDANCQIEKIKKIEDKATRETFAGLCSRRSRTGGGIAPTEKP
MNWLELADPKDSKGQEAKP*
AnnotationID:6445GeneID:6444
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 14:02:36
Gene Name:
Confidence Code:3
GeneProduct:possible entry/exclusion protein TrbK
Cell Localization:()
Synonyms:trbK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|77733993|emb|CAI10757.1|  TrbK protein [IncP-1beta multiresistance plasmid pB8]
gi|13661667|gb|AAK38011.1|  entry exclusion protein TrbK [Comamonas testosteroni]
gi|72384313|ref|YP_293666.1|  entry exclusion protein TrbK [Ralstonia eutropha JMP134]
gi|39777508|gb|AAR31083.1|  plasmid entry / exclusion [Wautersia eutropha]
gi|72123666|gb|AAZ65809.1|  entry exclusion protein TrbK [Ralstonia eutropha JMP134]
gi|34013321|dbj|BAC81994.1|  TrbK [Delftia acidovorans]
     Length=75
     Score = 75.1 bits (183),  Expect = 6e-13
     Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

gi|32455863|ref|NP_862516.1|  TrbK protein [Pseudomonas sp. ADP]
     Length=75
     Score = 73.6 bits (179),  Expect = 2e-12
     Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:12697
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16947
Author/Investigator(s): Tralau,T., Cook,A.M. and Ruff,J.
Title: Map of the IncP1beta plasmid pTSA encoding the widespread genes (tsa) for p-toluenesulfonate degradation in Comamonas testosteroni T-2
PubMed: 11282598
MedLine: 21178497
Source:
JOURNAL   Appl. Environ. Microbiol. 67 (4), 1508-1516 (2001)

Reference Type:Journal
Data:
URL:
ReferenceID:29993
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49446How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3639843Stop: 3639568
Length: 276
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAACCGACGATGCTGCTTGCCGGCCTCGTGGTGGCGCTGCTGGCCGGCTGCGACAGCAAGCCGGCCACC
CAGGCCATGCCCGAGGTCAATGACGCGAACTGCCAGATCGAGAAGATCAAAAAGATCGAGGACAAGGCGACG
CGCGAAACTTTCGCCGGGCTGTGCTCGCGCCGGTCGCGGACCGGCGGCGGCATCGCCCCGACCGAGAAGCCG
ATGAACTGGCTGGAACTGGCCGACCCGAAAGACTCGAAGGGGCAGGAGGCGAAGCCATGA