Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAK38012.1| (AF305549) mating pair formation protein TrbL [Comamonas testosteroni]
Identities = 306/563 (54%), Positives = 385/563 (68%), Gaps = 53/563 (9%)
Sequence:
ATGAAAGCACTGCACAAGGCGGCGCTGATCGGCGTCGCGCTCGCGCTCTACTCCACAGCCGCGTCGGCCCAG
CTCACCAACCAGGGGATGCTTGACCAAGTGGTAACGGAGTTCGCCACGCGGGCCACGGCCTGGCAGACGGTG
GTGATGAATGCCGCGACGTTCTTGTTCTGGACGCTGGGCACGATCTCGCTGGTCATCACCTTCGGCTTCATG
GCGCTGCGCAAGGCTGACATTGGTGAGTTCTTCGCCGAGTTCATCAGGTTCATCCTGTTCTTCGGCTTCTTC
CTCTGGTTGCTGCGCAATGGGCCGAACTTTGCCAACTCGATCATCCAGTCGCTGTCCAGGATTGGCGAGCAG
GCTTCCGGTATCTCCTCGATCACGCCGTCGGGCATCGTCGATGTGGGCTTCCTGATCTGGAAGCAGGCCATC
AACAACCTGTCGGCCTGGTCGCCCATCGACAGCTTTGTGGGCGTGGTCTTGAGCGCCGGCATCCTGCTTCTG
CTGGCTGTCATCGCCGTGAACATGTTGCTGCTGCTCGTGTCAGCCTGGCTGCTGTCCTATGCCGGCATCTTC
TTCCTCGGCTTCGGCGGATCGCGTTGGACTTCCGACATGGCGATCAACTACTACAAGACCGTGCTGGGCGTC
GCCGTGCAGATCATGACGATGGTGCTGCTTGTTGGCATCGGGAATGATCTGCTGTCCAGCTTCTACGCCAAG
ATGAGCAAGGGCACACTGAACTTCGAGGAGCTGGGCGTGATGCTGGTGTTCTGCCTGGCGTTGCTGCTGCTG
GTCAATCGCGTGCCGCCGCTGGTCGCCGGCGTGATTTCCGGTACGGGCGTTGGGAACGCCGGTGGCATCGGC
AACTTCGGTGCGGGCGCTGCTGTTGGTGCCGCGATGGGGGCTGCCAGTGTTGCGGCCGGCGCTGCAAGCATG
GCCGGCGCTGCCGTGATGAGTGGCGCGGCCAACCTCGCCGGCGGGGCTTCGGCCGTCAAAGCCGCCTTCGAG
AAGGCCCAAGGCAGCGCGACCGGCGATGCCGGCGCGGGCATGGACATGATGGCGAGCGTGGGGGGCGCGGGT
GCTTCGGGCGGTCAGGACTCAGCCGGCGCAGGGGGATCGCCCTTCGCGCAGGCTGCGGGCTTCGGGGGCTCG
TCGTCGGGTGGCGGCAGCAGCTCGGCCGGCTCGAAGGGGGGTGACAAGGGCGGCGCCGGCGACAAGGGCAGC
AGTTCGACCACCAGCACCGGCGACGGTGCCGACAAGTCGGCCAAGAGTGAACCCAAGCCCTCAGCCGGCGGT
GTTGGGCAGGGGCAGCAGGCCGCACCAGGCAGCACTGGCCGCAGTGGCCTGACTCGTGCCGCAGCATTGGCT
GCGGGCACCGCCGGCGAGCTGGCGAAGGGTGCGGGTGCCGTGCTCAGGGGCAAGGCGGTGCAACTTGCGGAG
GGCTTCCACGAACGCATGGACCAAACGATCGGCGGCCAAGTGGCAACGGCGATCCGAGCCAGCACTGCGGCA
GAGGCTCCTGCCTTCGATGGCGACAGCTTGGCCGGCGAGCAGGCCGGTAATCAGGCGGCCGATCCCGATGAT
GAAGTCGCTGCTTTCGTGAATCGCACGACGCCGGCGTGA
Translation:
MKALHKAALIGVALALYSTAASAQLTNQGMLDQVVTEFATRATAWQTVVMNAATFLFWTLGTISLVITFGFM
ALRKADIGEFFAEFIRFILFFGFFLWLLRNGPNFANSIIQSLSRIGEQASGISSITPSGIVDVGFLIWKQAI
NNLSAWSPIDSFVGVVLSAGILLLLAVIAVNMLLLLVSAWLLSYAGIFFLGFGGSRWTSDMAINYYKTVLGV
AVQIMTMVLLVGIGNDLLSSFYAKMSKGTLNFEELGVMLVFCLALLLLVNRVPPLVAGVISGTGVGNAGGIG
NFGAGAAVGAAMGAASVAAGAASMAGAAVMSGAANLAGGASAVKAAFEKAQGSATGDAGAGMDMMASVGGAG
ASGGQDSAGAGGSPFAQAAGFGGSSSGGGSSSAGSKGGDKGGAGDKGSSSTTSTGDGADKSAKSEPKPSAGG
VGQGQQAAPGSTGRSGLTRAAALAAGTAGELAKGAGAVLRGKAVQLAEGFHERMDQTIGGQVATAIRASTAA
EAPAFDGDSLAGEQAGNQAADPDDEVAAFVNRTTPA*
AnnotationID:6444 GeneID:6443
Modification Date/Time:
2005-10-18 14:02:41
GeneProduct: putative mating pair formation protein TrbL
Cell Localization Confidence Code: 5
Functional Category: (22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|13661668| gb|AAK38012.1| mating pair formation protein TrbL [Comamonas testosteroni]
Length=572
Score = 539 bits (1389), Expect = 9e-152
Identities = 306/563 (54%), Positives = 385/563 (68%), Gaps = 53/563 (9%)
gi|10955221| ref|NP_044250.1| TrbL [Enterobacter aerogenes]
Length=572
Score = 539 bits (1388), Expect = 1e-151
Identities = 306/563 (54%), Positives = 384/563 (68%), Gaps = 53/563 (9%)
gi|77733994| emb|CAI10758.1| TrbL protein [IncP-1beta multiresistance plasmid pB8]
gi|74020096| ref|ZP_00690703.1| TrbL/VirB6 plasmid conjugal transfer protein [Burkholderia ambifaria AMMD]
gi|72384314| ref|YP_293667.1| TrbL/VirB6 plasmid conjugal transfer protein [Ralstonia eutropha JMP134]
gi|39777509| gb|AAR31084.1| DNA topoisomerase [Wautersia eutropha]
gi|32455862| ref|NP_862515.1| TrbL protein [Pseudomonas sp. ADP]
gi|13937498| gb|AAK50309.1| TrbL protein [Pseudomonas sp. ADP]
gi|34013322| dbj|BAC81995.1| TrbL [Delftia acidovorans]
Length=572
Score = 539 bits (1388), Expect = 1e-151
Identities = 306/563 (54%), Positives = 384/563 (68%), Gaps = 53/563 (9%)
Structural Features: COG3846 , TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion].
CD-Length = 452 residues, only 54.4% aligned
Score = 82.3 bits (203), Expect = 2e-16
Genomic Context: next to homologs TrbK and TrbJ