ViewGene

Locus Name:
GeneID:
Location:

GeneID:6443
TrivialName: PA14_15540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15540
PAO1 Ortholog Locus:
Sequence Length:1623
Protein Length:540
Start: 1314366
Stop: 1315988
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK38012.1| (AF305549) mating pair formation protein TrbL [Comamonas testosteroni]
Identities = 306/563 (54%), Positives = 385/563 (68%), Gaps = 53/563 (9%)
Sequence:
ATGAAAGCACTGCACAAGGCGGCGCTGATCGGCGTCGCGCTCGCGCTCTACTCCACAGCCGCGTCGGCCCAG
CTCACCAACCAGGGGATGCTTGACCAAGTGGTAACGGAGTTCGCCACGCGGGCCACGGCCTGGCAGACGGTG
GTGATGAATGCCGCGACGTTCTTGTTCTGGACGCTGGGCACGATCTCGCTGGTCATCACCTTCGGCTTCATG
GCGCTGCGCAAGGCTGACATTGGTGAGTTCTTCGCCGAGTTCATCAGGTTCATCCTGTTCTTCGGCTTCTTC
CTCTGGTTGCTGCGCAATGGGCCGAACTTTGCCAACTCGATCATCCAGTCGCTGTCCAGGATTGGCGAGCAG
GCTTCCGGTATCTCCTCGATCACGCCGTCGGGCATCGTCGATGTGGGCTTCCTGATCTGGAAGCAGGCCATC
AACAACCTGTCGGCCTGGTCGCCCATCGACAGCTTTGTGGGCGTGGTCTTGAGCGCCGGCATCCTGCTTCTG
CTGGCTGTCATCGCCGTGAACATGTTGCTGCTGCTCGTGTCAGCCTGGCTGCTGTCCTATGCCGGCATCTTC
TTCCTCGGCTTCGGCGGATCGCGTTGGACTTCCGACATGGCGATCAACTACTACAAGACCGTGCTGGGCGTC
GCCGTGCAGATCATGACGATGGTGCTGCTTGTTGGCATCGGGAATGATCTGCTGTCCAGCTTCTACGCCAAG
ATGAGCAAGGGCACACTGAACTTCGAGGAGCTGGGCGTGATGCTGGTGTTCTGCCTGGCGTTGCTGCTGCTG
GTCAATCGCGTGCCGCCGCTGGTCGCCGGCGTGATTTCCGGTACGGGCGTTGGGAACGCCGGTGGCATCGGC
AACTTCGGTGCGGGCGCTGCTGTTGGTGCCGCGATGGGGGCTGCCAGTGTTGCGGCCGGCGCTGCAAGCATG
GCCGGCGCTGCCGTGATGAGTGGCGCGGCCAACCTCGCCGGCGGGGCTTCGGCCGTCAAAGCCGCCTTCGAG
AAGGCCCAAGGCAGCGCGACCGGCGATGCCGGCGCGGGCATGGACATGATGGCGAGCGTGGGGGGCGCGGGT
GCTTCGGGCGGTCAGGACTCAGCCGGCGCAGGGGGATCGCCCTTCGCGCAGGCTGCGGGCTTCGGGGGCTCG
TCGTCGGGTGGCGGCAGCAGCTCGGCCGGCTCGAAGGGGGGTGACAAGGGCGGCGCCGGCGACAAGGGCAGC
AGTTCGACCACCAGCACCGGCGACGGTGCCGACAAGTCGGCCAAGAGTGAACCCAAGCCCTCAGCCGGCGGT
GTTGGGCAGGGGCAGCAGGCCGCACCAGGCAGCACTGGCCGCAGTGGCCTGACTCGTGCCGCAGCATTGGCT
GCGGGCACCGCCGGCGAGCTGGCGAAGGGTGCGGGTGCCGTGCTCAGGGGCAAGGCGGTGCAACTTGCGGAG
GGCTTCCACGAACGCATGGACCAAACGATCGGCGGCCAAGTGGCAACGGCGATCCGAGCCAGCACTGCGGCA
GAGGCTCCTGCCTTCGATGGCGACAGCTTGGCCGGCGAGCAGGCCGGTAATCAGGCGGCCGATCCCGATGAT
GAAGTCGCTGCTTTCGTGAATCGCACGACGCCGGCGTGA
Translation:
MKALHKAALIGVALALYSTAASAQLTNQGMLDQVVTEFATRATAWQTVVMNAATFLFWTLGTISLVITFGFM
ALRKADIGEFFAEFIRFILFFGFFLWLLRNGPNFANSIIQSLSRIGEQASGISSITPSGIVDVGFLIWKQAI
NNLSAWSPIDSFVGVVLSAGILLLLAVIAVNMLLLLVSAWLLSYAGIFFLGFGGSRWTSDMAINYYKTVLGV
AVQIMTMVLLVGIGNDLLSSFYAKMSKGTLNFEELGVMLVFCLALLLLVNRVPPLVAGVISGTGVGNAGGIG
NFGAGAAVGAAMGAASVAAGAASMAGAAVMSGAANLAGGASAVKAAFEKAQGSATGDAGAGMDMMASVGGAG
ASGGQDSAGAGGSPFAQAAGFGGSSSGGGSSSAGSKGGDKGGAGDKGSSSTTSTGDGADKSAKSEPKPSAGG
VGQGQQAAPGSTGRSGLTRAAALAAGTAGELAKGAGAVLRGKAVQLAEGFHERMDQTIGGQVATAIRASTAA
EAPAFDGDSLAGEQAGNQAADPDDEVAAFVNRTTPA*
AnnotationID:6444GeneID:6443
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 14:02:41
Gene Name:
Confidence Code:3
GeneProduct:putative mating pair formation protein TrbL
Cell Localization:()
Synonyms:trbL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3846
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|13661668|gb|AAK38012.1|  mating pair formation protein TrbL [Comamonas testosteroni]
     Length=572
     Score =  539 bits (1389),  Expect = 9e-152
     Identities = 306/563 (54%), Positives = 385/563 (68%), Gaps = 53/563 (9%)

gi|10955221|ref|NP_044250.1|  TrbL [Enterobacter aerogenes]
     Length=572
     Score =  539 bits (1388),  Expect = 1e-151
     Identities = 306/563 (54%), Positives = 384/563 (68%), Gaps = 53/563 (9%)


gi|77733994|emb|CAI10758.1|  TrbL protein [IncP-1beta multiresistance plasmid pB8]
gi|74020096|ref|ZP_00690703.1|  TrbL/VirB6 plasmid conjugal transfer protein [Burkholderia ambifaria AMMD]
gi|72384314|ref|YP_293667.1|  TrbL/VirB6 plasmid conjugal transfer protein [Ralstonia eutropha JMP134]
gi|39777509|gb|AAR31084.1|  DNA topoisomerase [Wautersia eutropha]
gi|32455862|ref|NP_862515.1|  TrbL protein [Pseudomonas sp. ADP]
gi|13937498|gb|AAK50309.1|  TrbL protein [Pseudomonas sp. ADP]
gi|34013322|dbj|BAC81995.1|  TrbL [Delftia acidovorans]
     Length=572
     Score =  539 bits (1388),  Expect = 1e-151
     Identities = 306/563 (54%), Positives = 384/563 (68%), Gaps = 53/563 (9%)
Structural Features:
COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion].
             CD-Length = 452 residues, only  54.4% aligned
             Score = 82.3 bits (203), Expect = 2e-16
Genomic Context:
next to homologs TrbK and TrbJ
Comment:
ReferenceID:12695
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16946
Author/Investigator(s): Tralau,T., Cook,A.M. and Ruff,J.
Title: Map of the IncP1beta plasmid pTSA encoding the widespread genes (tsa) for p-toluenesulfonate degradation in Comamonas testosteroni T-2
PubMed: 11282598
MedLine: 21178497
Source:
 JOURNAL   Appl. Environ. Microbiol. 67 (4), 1508-1516 (2001)
Reference Type:Journal
Data:
URL:
ReferenceID:29991
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6443

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199211 gb|AAK38012.1| (AF305549) mating pair formation protein TrbL [Comamonas testosteroni] 590 53.05 66.77 68 1434.0
199212 gb|AAK50309.1|U66917_78 (U66917) TrbL protein [Pseudomonas sp. ADP] 590 53.05 66.61 68 1433.0
199213 emb|CAD97498.1| (AJ564903) putative DNA topoisomerase [uncultured bacterium] 590 53.05 66.61 68 1433.0
199214 gb|AAC64453.1| (U67194) TrbL [Enterobacter aerogenes] 590 53.05 66.61 68 1433.0
199215 dbj|BAC81995.1| (AB063332) TrbL [Delftia acidovorans] 590 53.05 66.61 68 1433.0
GC ORFID: 49445How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3639571Stop: 3637949
Length: 1623
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: psyr_15may02_Scaffold6_revised_gene6774 related to: gi|10956748|ref|NP_061693.1| (NC_002490) conjugal transfer protein [Xylella fastidiosa] [Xylella fastidiosa 9a5c] ref|NP_299328.1| (NC_002488) conjugal transfer protein [Xylella fastidiosa 9a5c] pir||E82Homolog Bit Score 204.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6774 related to: gi|10956748|ref|NP_061693.1| (NC_002490) conjugal transfer protein [Xylella fastidiosa] [Xylella fastidiosa 9a5c] ref|NP_299328.1| (NC_002488) conjugal transfer protein [Xylella fastidiosa 9a5c] pir||E82865 conjugal transfer protein XFa0037 XF2046 [im-TRUNCATED- (BLASTP 204)
GC ORF Sequence
ATGAAAGCACTGCACAAGGCGGCGCTGATCGGCGTCGCGCTCGCGCTCTACTCCACAGCCGCGTCGGCCCAG
CTCACCAACCAGGGGATGCTTGACCAAGTGGTAACGGAGTTCGCCACGCGGGCCACGGCCTGGCAGACGGTG
GTGATGAATGCCGCGACGTTCTTGTTCTGGACGCTGGGCACGATCTCGCTGGTCATCACCTTCGGCTTCATG
GCGCTGCGCAAGGCTGACATTGGTGAGTTCTTCGCCGAGTTCATCAGGTTCATCCTGTTCTTCGGCTTCTTC
CTCTGGTTGCTGCGCAATGGGCCGAACTTTGCCAACTCGATCATCCAGTCGCTGTCCAGGATTGGCGAGCAG
GCTTCCGGTATCTCCTCGATCACGCCGTCGGGCATCGTCGATGTGGGCTTCCTGATCTGGAAGCAGGCCATC
AACAACCTGTCGGCCTGGTCGCCCATCGACAGCTTTGTGGGCGTGGTCTTGAGCGCCGGCATCCTGCTTCTG
CTGGCTGTCATCGCCGTGAACATGTTGCTGCTGCTCGTGTCAGCCTGGCTGCTGTCCTATGCCGGCATCTTC
TTCCTCGGCTTCGGCGGATCGCGTTGGACTTCCGACATGGCGATCAACTACTACAAGACCGTGCTGGGCGTC
GCCGTGCAGATCATGACGATGGTGCTGCTTGTTGGCATCGGGAATGATCTGCTGTCCAGCTTCTACGCCAAG
ATGAGCAAGGGCACACTGAACTTCGAGGAGCTGGGCGTGATGCTGGTGTTCTGCCTGGCGTTGCTGCTGCTG
GTCAATCGCGTGCCGCCGCTGGTCGCCGGCGTGATTTCCGGTACGGGCGTTGGGAACGCCGGTGGCATCGGC
AACTTCGGTGCGGGCGCTGCTGTTGGTGCCGCGATGGGGGCTGCCAGTGTTGCGGCCGGCGCTGCAAGCATG
GCCGGCGCTGCCGTGATGAGTGGCGCGGCCAACCTCGCCGGCGGGGCTTCGGCCGTCAAAGCCGCCTTCGAG
AAGGCCCAAGGCAGCGCGACCGGCGATGCCGGCGCGGGCATGGACATGATGGCGAGCGTGGGGGGCGCGGGT
GCTTCGGGCGGTCAGGACTCAGCCGGCGCAGGGGGATCGCCCTTCGCGCAGGCTGCGGGCTTCGGGGGCTCG
TCGTCGGGTGGCGGCAGCAGCTCGGCCGGCTCGAAGGGGGGTGACAAGGGCGGCGCCGGCGACAAGGGCAGC
AGTTCGACCACCAGCACCGGCGACGGTGCCGACAAGTCGGCCAAGAGTGAACCCAAGCCCTCAGCCGGCGGT
GTTGGGCAGGGGCAGCAGGCCGCACCAGGCAGCACTGGCCGCAGTGGCCTGACTCGTGCCGCAGCATTGGCT
GCGGGCACCGCCGGCGAGCTGGCGAAGGGTGCGGGTGCCGTGCTCAGGGGCAAGGCGGTGCAACTTGCGGAG
GGCTTCCACGAACGCATGGACCAAACGATCGGCGGCCAAGTGGCAACGGCGATCCGAGCCAGCACTGCGGCA
GAGGCTCCTGCCTTCGATGGCGACAGCTTGGCCGGCGAGCAGGCCGGTAATCAGGCGGCCGATCCCGATGAT
GAAGTCGCTGCTTTCGTGAATCGCACGACGCCGGCGTGA