ViewGene

Locus Name:
GeneID:
Location:

GeneID:6440
TrivialName: PA14_15570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15570
PAO1 Ortholog Locus:
Sequence Length:201
Protein Length:66
Start: 1317148
Stop: 1317348
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE36562.1| (BX640426) putative phage protein [Bordetella parapertussis]
Identities = 50/53 (94%), Positives = 52/53 (98%)
Sequence:
ATGAACCAACCCGATAGCGAAATTCTCACGCTGGATGAAGTGGCGGTCTACCTCAAGGCAGGGAAGAAGACC
GTATACCGGCTGGCCCAGCAGGGGGAGATACCGGGATTCAAGCTGGGCGGCACCTGGCGGTTTCGTCGCAGC
GAGTTGGATCGCTGGATTGCCGCGCAGATAGCCGAGAAGACGCAGGACAAGACATGA
Translation:
MNQPDSEILTLDEVAVYLKAGKKTVYRLAQQGEIPGFKLGGTWRFRRSELDRWIAAQIAEKTQDKT*
AnnotationID:6441GeneID:6440
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:59
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3311
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|33595929|ref|NP_883572.1|  hypothetical protein BPP1260 [Bordetella parapertussis 12822]
gi|33566008|emb|CAE36562.1|  putative phage protein [Bordetella parapertussis]
     Length=53
     Score =  104 bits (260),  Expect = 7e-22
     Identities = 50/53 (94%), Positives = 52/53 (98%), Gaps = 0/53 (0%)

gi|68212358|ref|ZP_00564195.1|  Excisionase/Xis, DNA-binding [Methylobacillus flagellatus KT]
gi|68189110|gb|EAN03787.1|  Excisionase/Xis, DNA-binding [Methylobacillus flagellatus KT]
     Length=93
     Score = 83.2 bits (204),  Expect = 2e-15  
     Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 0/58 (0%)
Structural Features:
COG3311, AlpA, Predicted transcriptional regulator [Transcription].
             CD-Length = 70 residues,  87.1% aligned
             Score = 39.1 bits (91), Expect = 1e-04
Genomic Context:
Comment:
ReferenceID:12690
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16945
Author/Investigator(s): Billington SJ, Huggins AS, Johanesen PA, Crellin PK, Cheung JK, Katz ME, Wright CL, Haring V, Rood JI.
Title: Complete nucleotide sequence of the 27-kilobase virulence related locus (vrl) of Dichelobacter nodosus: evidence for extrachromosomal origin.
PubMed: PMID: 10024571
MedLine:
Source:
Reference Type:
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10024571&dopt=Citation
ReferenceID:29985
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6440

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199210 emb|CAE36562.1| (BX640426) putative phage protein [Bordetella parapertussis] 66 75.75 78.78 13 260.0
GC ORFID: 49442How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3636789Stop: 3636589
Length: 201
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAACCAACCCGATAGCGAAATTCTCACGCTGGATGAAGTGGCGGTCTACCTCAAGGCAGGGAAGAAGACC
GTATACCGGCTGGCCCAGCAGGGGGAGATACCGGGATTCAAGCTGGGCGGCACCTGGCGGTTTCGTCGCAGC
GAGTTGGATCGCTGGATTGCCGCGCAGATAGCCGAGAAGACGCAGGACAAGACATGA