ViewGene
Locus Name:
GeneID:
Location:

GeneID:6439
TrivialName: PA14_15580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15580
PAO1 Ortholog Locus:
Sequence Length:2781
Protein Length:926
Start: 1317407
Stop: 1320187
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP99674.1| (AE017162) Type II restriction enzyme, methylase subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375]
Identities = 566/911 (62%), Positives = 707/911 (77%), Gaps = 2/911 (0%)
Sequence:
ATGAATGCCGTAGAAATCGAACAAGCCATCACCGACCTCGCGGAGCAGCCCTTCGACCGTGCAGAGTTCCCC
TACGCCTTCCTTGAAGCCTTTGGCAACAAGGCGACGACAATCAAGCGCCTGCGTGCGGGGGCGTCGAACAAA
TCCGACCTCGGCGGTGTTCTCCAGACCAGCAACATCCACATTCTGACCAGCGACGCTGGGCGGGTGACGCAG
ACGCTGGCCGCTCTCAAGGCCAGCCCTGCGACGGCCAAGGCCAAGGCGAAGTTCATCCTTGCTACGGACGGC
GCGGACTTCGAGGCCGAAGACCTGACCAGCGGCGAGACCGTCGCCTGCGCCTTCAAGGACTTTCCCGATCAC
TTCGGCTTCTTCCTGCCGCTGGCGGGCATCAGCACCGTCCGCCAGATCAGTGAAAACGCTTTCGACATCCGG
GCCACCAGTCGGCTGAACCGGCTGTACGTTGAATTGTTGAAAGACAACCCGGCCTGGGGCACAGCGGAGCGC
CGCCACGACATGAACAAGCTCATGGCGCGGCTGATCTTCTGCTTCTTCGCCGAGGACACCGATATCTTTGGC
GGCAGGGGCAAGTTCACCGAGACCGTCGCGCGGATGAGTGCGGGGGATTCGACCAATACGCACGAGGTCATC
GCCACGCTGTTCCGCACCATGAATACCAAGCGTGAAGACCGGGCGGCCGCCGGGCTGCCCCGGTGGGCCAAT
ATCGACGATTTCCCCTACGTCAACGGGCAGTTGTTCTCTGGCGGCGACGAAGTGCCGCGATTCAGCAAGATC
GCCCGGTCCTACCTGCTGCACGTCGGCGGGCTGGACTGGACCAAGATCAACCCGGACATCTTCGGATCGATG
ATCCAGGCCGTCGCCGAGGACGAGGAGCGCGGCGAGCTGGGGATGCACTACACCAGTGTTCCCAACATCCTG
AAGGTGCTGAACCCGCTGTTTCTCGACGACCTGCGTGCAAAGCTAGAAGAGGCGGGTGACAACCCGCGCACC
TTGCTCAACCTGCGCAAGCGCATCGCCAAGATCCGAGTTTTCGACCCGGCCTGCGGCTCGGGTAACTTCCTT
GTTATCGCCTACAAAGAGATGCGTGCCATCGAGGCAGAGATCAACAAGCGGCGCGGCGAACCAGATCGCGCG
TCTGACATCCCGCTCACCAACTTTCGCGGGATTGAGCTGCGCGACTTCCCGGCGGAGATCGCCCGCCTTGCG
CTGGTCATCGCCGAGTACCAGTGCGACGTGCTGTACCGAGGGCAGAAGCTGGCCCTGGCCGAGTTCTTGCCC
CTGCGCAATGAGAACTGGATTACCTGCGGCAACGCGCTGCGTCTTGATTGGTTGAGCGTTTGCCCGCCGACT
GGAACGGGGGTGAAGTTGCAGGCGGACGACCTGTTCAGCTCGCCGTTGGACCAAGCCCAGATCGACTTCGAG
AACGAAGGGGGCGAAACATATATTTGTGGCAACCCGCCGTATCTGGGAAGCAAGTGGCAGTCAGACGAACAG
AAGGGCGAGCTTAAGGCGATCTTCGAACGCATTGGTGTCGCGTGGAAATCTCTGGACTACGTTGCCGGGTGG
TTCATGAAGGCTGCAGCATATGGCGAGCGCACTAATGCGGCCACTGCCTTCGTTTCCACCAACTCAATCTGC
CAAGGCTTGCAGGTTCCTATTTTGTGGCCTGCAATTTTTAACACCGGACACCAGATCGTATTCGCGCACACA
TCCTTCAAGTGGACCAATCTCGCAAGCAATAACGCTGGTGTGACTGTGGCCATCGTGGGTATTTCATCCACG
CCACAACCTATTAAAAGGTTGTTCTCCGTGAGTGAGGATGGCTCCGTGCAGGAGCGGCAAGTTGACTATATC
AATGCCTACCTTGTGCCGGGGCGCGTCAACTCGGTGGAGCAGGAGCGTCGACCGATTTCATCTGTATCGCCC
ATGCTGTTTGGCAACATGCCGCGTGATGGTGGTGCATTTGTTTTGGACGGCGAGGAACGAGCACGTGTGCTG
ATGCAGCACCCCGAACTCGAACGCTTCGTTCGCCCGTACATGGGCTCTGAACAGATGATCCAGGGAAAACCT
CGGTGGTGCCTGTGGATTGAGGACGACGATGCGCCTTATGCGCAGCAACACCCCTACCTGAAGACGGTGTTG
GACCAAGTACGGGATTTTCGCCTATCAAGTGCTGCCAGTTCTACCCGCGACTTCGCGGCACGGCCTCATCGC
TTCGTCCAAATTGCCGGTACCGCTAAGCAGCATTCGCTTGTCGTGGCGAAAGTCTCGTCCGAGCGCCGACCA
TACCTGCCTGTGGACCTTTTAGACGGCAGCGTGATCGTTAGCGATCTCTTGTTCGCGCTGTATGACGCGCCG
CTATGGAACTTGGCGGTGTTGGCGTCACGACTTCATCTCGTGTGGATTGCAACCGTGTGCGGAAAAATGAAA
ACCGACTTCCGGTATTCGAACACCATCGGCTGGAATACCTTCCCACTGCCTAAGTTGACAGAGAAGAATATC
GATGACCTCACCAGATGCGCACAAGAGATCCTGCTAGCGCGTGAGCGCCACTACCCGCAGACTCTTGCCGAA
CTCTATGCGCCTGACGCAATGCCGACCGATCTACTTCGCGCACATGAGCGTAACGATGAAGTTGTGGAGAGA
ATCTATATAGGTCGCTTATTCAAGAATGACACGGAGCGCCTTGAAAAACTCTTTGAGCTCTATTCACGCATG
TCCGGTCAAGCGGGTGCCGGGCAGCGCCGAGTCAAACGAGCGTAA
Translation:
MNAVEIEQAITDLAEQPFDRAEFPYAFLEAFGNKATTIKRLRAGASNKSDLGGVLQTSNIHILTSDAGRVTQ
TLAALKASPATAKAKAKFILATDGADFEAEDLTSGETVACAFKDFPDHFGFFLPLAGISTVRQISENAFDIR
ATSRLNRLYVELLKDNPAWGTAERRHDMNKLMARLIFCFFAEDTDIFGGRGKFTETVARMSAGDSTNTHEVI
ATLFRTMNTKREDRAAAGLPRWANIDDFPYVNGQLFSGGDEVPRFSKIARSYLLHVGGLDWTKINPDIFGSM
IQAVAEDEERGELGMHYTSVPNILKVLNPLFLDDLRAKLEEAGDNPRTLLNLRKRIAKIRVFDPACGSGNFL
VIAYKEMRAIEAEINKRRGEPDRASDIPLTNFRGIELRDFPAEIARLALVIAEYQCDVLYRGQKLALAEFLP
LRNENWITCGNALRLDWLSVCPPTGTGVKLQADDLFSSPLDQAQIDFENEGGETYICGNPPYLGSKWQSDEQ
KGELKAIFERIGVAWKSLDYVAGWFMKAAAYGERTNAATAFVSTNSICQGLQVPILWPAIFNTGHQIVFAHT
SFKWTNLASNNAGVTVAIVGISSTPQPIKRLFSVSEDGSVQERQVDYINAYLVPGRVNSVEQERRPISSVSP
MLFGNMPRDGGAFVLDGEERARVLMQHPELERFVRPYMGSEQMIQGKPRWCLWIEDDDAPYAQQHPYLKTVL
DQVRDFRLSSAASSTRDFAARPHRFVQIAGTAKQHSLVVAKVSSERRPYLPVDLLDGSVIVSDLLFALYDAP
LWNLAVLASRLHLVWIATVCGKMKTDFRYSNTIGWNTFPLPKLTEKNIDDLTRCAQEILLARERHYPQTLAE
LYAPDAMPTDLLRAHERNDEVVERIYIGRLFKNDTERLEKLFELYSRMSGQAGAGQRRVKRA*
AnnotationID:6440GeneID:6439
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:14
Gene Name:
Confidence Code:3
GeneProduct:possible Type II restriction enzyme, methylase subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|33240080|ref|NP_875022.1|  Type II restriction enzyme, methylase subunit [Prochlorococcus 
            marinus subsp. marinus str. CCMP1375]
     Length=915
     Score = 1154 bits (2985),  Expect = 0.0
     Identities = 566/911 (62%), Positives = 707/911 (77%), Gaps = 2/911 (0%)

gi|69931244|ref|ZP_00627839.1|  type II restriction enzyme, methylase subunit [Nitrobacter hamburgensis X14]
     Length=921
     Score = 1152 bits (2979),  Expect = 0.0
     Identities = 580/925 (62%), Positives = 702/925 (75%), Gaps = 10/925 (1%)

gi|77164957|ref|YP_343482.1|  hypothetical protein Noc_1465 [Nitrosococcus oceani ATCC 19707]
gi|76883271|gb|ABA57952.1|  conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
     Length=914
     Score =  597 bits (1538),  Expect = 9e-169
     Identities = 350/936 (37%), Positives = 517/936 (55%), Gaps = 52/936 (5%)






 
Structural Features:
COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].
             CD-Length = 786 residues,  81.3% aligned
             Score = 65.3 bits (158), Expect = 4e-11






   
Genomic Context:






   
Comment:


















    ReferenceID:12688




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16944




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
COG






    
Reference Type: 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1002&version=

















    ReferenceID:29983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6439
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199207
                           gb|AAP99674.1|
                           (AE017162) Type II restriction enzyme, methylase subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375]
                           927
                           61.05
                           76.59
                           13
                           2980.0
     

     
     
199208
                           gb|AAM41392.1|
                           (AE012317) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           931
                           15.35
                           20.51
                           659
                           719.0
     

     
     
199209
                           gb|AAN32874.1|AF461726_1
                           (AF461726) unknown [Pseudomonas fluorescens]
                           926
                           7.55
                           11.01
                           758
                           338.0
     

     






      

          
GC ORFID: 49441How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3636530Stop: 3633750

          
Length: 2781


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAATGCCGTAGAAATCGAACAAGCCATCACCGACCTCGCGGAGCAGCCCTTCGACCGTGCAGAGTTCCCC 
TACGCCTTCCTTGAAGCCTTTGGCAACAAGGCGACGACAATCAAGCGCCTGCGTGCGGGGGCGTCGAACAAA 
TCCGACCTCGGCGGTGTTCTCCAGACCAGCAACATCCACATTCTGACCAGCGACGCTGGGCGGGTGACGCAG 
ACGCTGGCCGCTCTCAAGGCCAGCCCTGCGACGGCCAAGGCCAAGGCGAAGTTCATCCTTGCTACGGACGGC 
GCGGACTTCGAGGCCGAAGACCTGACCAGCGGCGAGACCGTCGCCTGCGCCTTCAAGGACTTTCCCGATCAC 
TTCGGCTTCTTCCTGCCGCTGGCGGGCATCAGCACCGTCCGCCAGATCAGTGAAAACGCTTTCGACATCCGG 
GCCACCAGTCGGCTGAACCGGCTGTACGTTGAATTGTTGAAAGACAACCCGGCCTGGGGCACAGCGGAGCGC 
CGCCACGACATGAACAAGCTCATGGCGCGGCTGATCTTCTGCTTCTTCGCCGAGGACACCGATATCTTTGGC 
GGCAGGGGCAAGTTCACCGAGACCGTCGCGCGGATGAGTGCGGGGGATTCGACCAATACGCACGAGGTCATC 
GCCACGCTGTTCCGCACCATGAATACCAAGCGTGAAGACCGGGCGGCCGCCGGGCTGCCCCGGTGGGCCAAT 
ATCGACGATTTCCCCTACGTCAACGGGCAGTTGTTCTCTGGCGGCGACGAAGTGCCGCGATTCAGCAAGATC 
GCCCGGTCCTACCTGCTGCACGTCGGCGGGCTGGACTGGACCAAGATCAACCCGGACATCTTCGGATCGATG 
ATCCAGGCCGTCGCCGAGGACGAGGAGCGCGGCGAGCTGGGGATGCACTACACCAGTGTTCCCAACATCCTG 
AAGGTGCTGAACCCGCTGTTTCTCGACGACCTGCGTGCAAAGCTAGAAGAGGCGGGTGACAACCCGCGCACC 
TTGCTCAACCTGCGCAAGCGCATCGCCAAGATCCGAGTTTTCGACCCGGCCTGCGGCTCGGGTAACTTCCTT 
GTTATCGCCTACAAAGAGATGCGTGCCATCGAGGCAGAGATCAACAAGCGGCGCGGCGAACCAGATCGCGCG 
TCTGACATCCCGCTCACCAACTTTCGCGGGATTGAGCTGCGCGACTTCCCGGCGGAGATCGCCCGCCTTGCG 
CTGGTCATCGCCGAGTACCAGTGCGACGTGCTGTACCGAGGGCAGAAGCTGGCCCTGGCCGAGTTCTTGCCC 
CTGCGCAATGAGAACTGGATTACCTGCGGCAACGCGCTGCGTCTTGATTGGTTGAGCGTTTGCCCGCCGACT 
GGAACGGGGGTGAAGTTGCAGGCGGACGACCTGTTCAGCTCGCCGTTGGACCAAGCCCAGATCGACTTCGAG 
AACGAAGGGGGCGAAACATATATTTGTGGCAACCCGCCGTATCTGGGAAGCAAGTGGCAGTCAGACGAACAG 
AAGGGCGAGCTTAAGGCGATCTTCGAACGCATTGGTGTCGCGTGGAAATCTCTGGACTACGTTGCCGGGTGG 
TTCATGAAGGCTGCAGCATATGGCGAGCGCACTAATGCGGCCACTGCCTTCGTTTCCACCAACTCAATCTGC 
CAAGGCTTGCAGGTTCCTATTTTGTGGCCTGCAATTTTTAACACCGGACACCAGATCGTATTCGCGCACACA 
TCCTTCAAGTGGACCAATCTCGCAAGCAATAACGCTGGTGTGACTGTGGCCATCGTGGGTATTTCATCCACG 
CCACAACCTATTAAAAGGTTGTTCTCCGTGAGTGAGGATGGCTCCGTGCAGGAGCGGCAAGTTGACTATATC 
AATGCCTACCTTGTGCCGGGGCGCGTCAACTCGGTGGAGCAGGAGCGTCGACCGATTTCATCTGTATCGCCC 
ATGCTGTTTGGCAACATGCCGCGTGATGGTGGTGCATTTGTTTTGGACGGCGAGGAACGAGCACGTGTGCTG 
ATGCAGCACCCCGAACTCGAACGCTTCGTTCGCCCGTACATGGGCTCTGAACAGATGATCCAGGGAAAACCT 
CGGTGGTGCCTGTGGATTGAGGACGACGATGCGCCTTATGCGCAGCAACACCCCTACCTGAAGACGGTGTTG 
GACCAAGTACGGGATTTTCGCCTATCAAGTGCTGCCAGTTCTACCCGCGACTTCGCGGCACGGCCTCATCGC 
TTCGTCCAAATTGCCGGTACCGCTAAGCAGCATTCGCTTGTCGTGGCGAAAGTCTCGTCCGAGCGCCGACCA 
TACCTGCCTGTGGACCTTTTAGACGGCAGCGTGATCGTTAGCGATCTCTTGTTCGCGCTGTATGACGCGCCG 
CTATGGAACTTGGCGGTGTTGGCGTCACGACTTCATCTCGTGTGGATTGCAACCGTGTGCGGAAAAATGAAA 
ACCGACTTCCGGTATTCGAACACCATCGGCTGGAATACCTTCCCACTGCCTAAGTTGACAGAGAAGAATATC 
GATGACCTCACCAGATGCGCACAAGAGATCCTGCTAGCGCGTGAGCGCCACTACCCGCAGACTCTTGCCGAA 
CTCTATGCGCCTGACGCAATGCCGACCGATCTACTTCGCGCACATGAGCGTAACGATGAAGTTGTGGAGAGA 
ATCTATATAGGTCGCTTATTCAAGAATGACACGGAGCGCCTTGAAAAACTCTTTGAGCTCTATTCACGCATG 
TCCGGTCAAGCGGGTGCCGGGCAGCGCCGAGTCAAACGAGCGTAA