ViewGene

Locus Name:
GeneID:
Location:

GeneID:6438
TrivialName: PA14_15590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15590
PAO1 Ortholog Locus:
Sequence Length:2118
Protein Length:705
Start: 1321218
Stop: 1323335
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE36565.1| (BX640426) conserved hypothetical protein [Bordetella parapertussis]
Identities = 639/684 (93%), Positives = 660/684 (96%)
Sequence:
ATGGCCATATCACATGACAGCAAAGCCGGCACAACGCAGCACCGAAGCGAGACCTTCCTCATGAACAACATC
AAACCTCGGAGCGTCCCCTCCGTATCTGTTACGTATGCGCGTAACGGTGCATCAACCAAGGCTAATGCGCTC
GGTATGCGTCCGATGCAGGAGCGGGCCTATGACAAGCGGGGCGAGCAGTACCTGCTCATCAAGTCGCCGCCC
GCTTCGGGTAAGAGTCGCGCCCTGATGTTCGTGGCGCTCGACAAATTGCAGAACCAGGGCTTGAGGCAAGCC
ATCATCGTCGTGCCCGAGAAGTCCATCGGGGCCAGCTTCAACGATGAGCCGCTGTCAAAGTACGGCTTCTGG
GCTGATTGGCACGTCGAGCCAAAGTGGAACTTGTGCAATGCGCCAGGCAACGACAACGGCGGTAAGGTCAAG
TCCCTCGGCGCGTTCCTCGAAGGCGACGACAAGGTGCTGGTCTGCACGCACGCCACTTTCCGATTCGCGGTC
GATGCCTATGGCATCGAGGCGTTCGACGACCGTCTGATCGCCGTCGATGAGTTTCATCACGTTTCGGCCAAC
CCCGACAACAAGCTGGGCACGCACCTGGGCCAGTTCATCGCGCGAGACAAGACGCACATCGTCGCCATGACC
GGCTCCTACTTCCGGGGCGACGCGGAGGCCGTCCTCGCTCCGCACGACGAGTCGAAATTCGATACCGTTACC
TACACCTACTACGAACAGCTCAACGGCTACGAGTACCTCAAGCAACTCGACATCGGCTATTTCTTCTACAGC
GGGCCTTATGTCGATGACATTCTCAATGTCCTCGACCCTGTTGAGAAGACCATCATCCACATCCCCAACGTC
AATTCGCGCGAAAGCACGAAGGACAAAATGCGCGAGGTGGAGCACATCATCGAGGCGCTGGGGGAGTGGCAT
GGCATCGACGCCACCACAGGGTTCCAGCTCGTTAAGCTCCCCGATGACCGCGTGTTGCGCATCGCTGATCTG
GTCGATGACGATGCCTCGAAGCGCGACCGAGTGTCCGCCGCGTTGAAAGACCCGGCTCAGAAGAACAATCGC
GACCATGTGGACATCATCATCGCGCTGGGTATGGCGAAGGAAGGCTTCGACTGGATTTGGTGCGAACACGCG
CTGACCGTGGGCTACCGTGCCAGCTTGACCGAGATCGTTCAGATCATTGGTCGTGCCACCCGAGATGCGCCT
GGAAAGACTCGCGCGAGGTTCACCAACCTTATCGCCGAGCCGGACGCGACCGAGGAAGCGGTCACCGAGGCC
ATTAACGATACGTTGAAGGCCATCGCGGCGAGTCTGCTGATGGAGCAGGTTCTCGCTCCGCGCTTCGAGTTC
AAGCCCAAGAATCCCGACAGCGGCCCGACGCCAGGCTTTAATTATGGCGAGGGTGGCTATGACCCGGACCGC
TGCAACATCGGTGTCAATGAGCAGACAGGGGCCTACCAGATCGAGATCAAGGGCCTCGCCGAACCCAAGAGC
AAAGAGGCAGCGCGCATCTGCCAGGAAGACTTGAACGAAGTGATCGCGGCTTTCGTGCAGGACAAGCACACC
ATCGAGCGTGGCTTGTTCGACGAAGAGCTGGTTCCCGAGGAGCTCACGCAGGTTCGCATGGGCAAGATTATC
AAGGACAAATATCCCGAGCTTGACGCTGAAGATCAGGAGGCGGTACGCCAGCACGCCATCGCCGCCCTCAAC
CTTACGCAGCAGGCCAAGCGGCTTGTCACCGAAGGCGAGAGCGACGGATCGCCCAACACCGCCCTGATCGAT
GGCGTGCGCCGCTTTGCGATGGACGTGCGCGAGCTGGACATTGACCTCATCGACCGCATCAACCCCTTTGGC
GAAGCCTATGCCATCCTCGCCAAGACAATGAGCGAGGACAGCTTGAAGCAGGTCGCGGCGGCCATCTCGGCC
AAACGCACCTCTATCACGCCTGAAGATGCCAAAGTGATCGCCAAGCGCGCGGTTGAGTTCAAACGCGAACGT
GGGAGGGCTCCATCGGTTACCTCGCAGGACGCCTGGGAAAAGCACCTTGCCGAAGGTGCGGCCGCCTTCATG
CGGTTCAGGGCGGAGGGACGCTATGAGTAA
Translation:
MAISHDSKAGTTQHRSETFLMNNIKPRSVPSVSVTYARNGASTKANALGMRPMQERAYDKRGEQYLLIKSPP
ASGKSRALMFVALDKLQNQGLRQAIIVVPEKSIGASFNDEPLSKYGFWADWHVEPKWNLCNAPGNDNGGKVK
SLGAFLEGDDKVLVCTHATFRFAVDAYGIEAFDDRLIAVDEFHHVSANPDNKLGTHLGQFIARDKTHIVAMT
GSYFRGDAEAVLAPHDESKFDTVTYTYYEQLNGYEYLKQLDIGYFFYSGPYVDDILNVLDPVEKTIIHIPNV
NSRESTKDKMREVEHIIEALGEWHGIDATTGFQLVKLPDDRVLRIADLVDDDASKRDRVSAALKDPAQKNNR
DHVDIIIALGMAKEGFDWIWCEHALTVGYRASLTEIVQIIGRATRDAPGKTRARFTNLIAEPDATEEAVTEA
INDTLKAIAASLLMEQVLAPRFEFKPKNPDSGPTPGFNYGEGGYDPDRCNIGVNEQTGAYQIEIKGLAEPKS
KEAARICQEDLNEVIAAFVQDKHTIERGLFDEELVPEELTQVRMGKIIKDKYPELDAEDQEAVRQHAIAALN
LTQQAKRLVTEGESDGSPNTALIDGVRRFAMDVRELDIDLIDRINPFGEAYAILAKTMSEDSLKQVAAAISA
KRTSITPEDAKVIAKRAVEFKRERGRAPSVTSQDAWEKHLAEGAAAFMRFRAEGRYE*
AnnotationID:6439GeneID:6438
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|33595931|ref|NP_883574.1|  hypothetical protein BPP1264 [Bordetella parapertussis 12822]
gi|33566010|emb|CAE36565.1|  conserved hypothetical protein [Bordetella parapertussis]
      Length=685
      Score = 1282 bits (3318),  Expect = 0.0
      Identities = 639/684 (93%), Positives = 660/684 (96%), Gaps = 0/684 (0%)

gi|69931245|ref|ZP_00627840.1|  DEAD/DEAH box helicase [Nitrobacter hamburgensis X14]
      Length=692
      Score = 1142 bits (2953),  Expect = 0.0
      Identities = 567/686 (82%), Positives = 620/686 (90%), Gaps = 7/686 (1%)


gi|33240079|ref|NP_875021.1|  DNA helicase, predicted restriction/modification system component, 
ortholog of BS_yeeB [Prochlorococcus marinus subsp. marinus str. CCMP1375]
      Length=687
      Score =  969 bits (2505),  Expect = 0.0
      Identities = 477/680 (70%), Positives = 567/680 (83%), Gaps = 7/680 (1%)
Structural Features:
smart00487, DEXDc, DEAD-like helicases superfamily; .
             CD-Length = 202 residues,  79.7% aligned
             Score = 59.1 bits (142), Expect = 2e-09

COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
             CD-Length = 442 residues,  81.9% aligned
             Score = 52.4 bits (125), Expect = 2e-07
Genomic Context:
Comment:
ReferenceID:12686
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29981
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6438

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
199200 emb|CAE36565.1| (BX640426) conserved hypothetical protein [Bordetella parapertussis] 705 90.63 93.61 20 3317.0
199201 gb|AAP99673.1| (AE017162) DNA helicase, predicted restriction/modification system component, ortholog of BS_yeeB [Prochlorococcus marinus subsp. marinus str. CCMP1375] 713 67.46 80.36 34 2507.0
199202 gb|AAM41391.1| (AE012317) YeeB-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 722 65.09 78.53 40 2444.0
199203 emb|CAB12497.1| (Z99107) yeeB [Bacillus subtilis subsp. subtilis str. 168] 707 43.14 56.71 111 1389.0
199204 gb|AAB66475.1| (AF012532) YeeB [Bacillus subtilis] 707 43.14 56.71 111 1389.0
GC ORFID: 49440How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3632719Stop: 3630602
Length: 2118
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCCATATCACATGACAGCAAAGCCGGCACAACGCAGCACCGAAGCGAGACCTTCCTCATGAACAACATC
AAACCTCGGAGCGTCCCCTCCGTATCTGTTACGTATGCGCGTAACGGTGCATCAACCAAGGCTAATGCGCTC
GGTATGCGTCCGATGCAGGAGCGGGCCTATGACAAGCGGGGCGAGCAGTACCTGCTCATCAAGTCGCCGCCC
GCTTCGGGTAAGAGTCGCGCCCTGATGTTCGTGGCGCTCGACAAATTGCAGAACCAGGGCTTGAGGCAAGCC
ATCATCGTCGTGCCCGAGAAGTCCATCGGGGCCAGCTTCAACGATGAGCCGCTGTCAAAGTACGGCTTCTGG
GCTGATTGGCACGTCGAGCCAAAGTGGAACTTGTGCAATGCGCCAGGCAACGACAACGGCGGTAAGGTCAAG
TCCCTCGGCGCGTTCCTCGAAGGCGACGACAAGGTGCTGGTCTGCACGCACGCCACTTTCCGATTCGCGGTC
GATGCCTATGGCATCGAGGCGTTCGACGACCGTCTGATCGCCGTCGATGAGTTTCATCACGTTTCGGCCAAC
CCCGACAACAAGCTGGGCACGCACCTGGGCCAGTTCATCGCGCGAGACAAGACGCACATCGTCGCCATGACC
GGCTCCTACTTCCGGGGCGACGCGGAGGCCGTCCTCGCTCCGCACGACGAGTCGAAATTCGATACCGTTACC
TACACCTACTACGAACAGCTCAACGGCTACGAGTACCTCAAGCAACTCGACATCGGCTATTTCTTCTACAGC
GGGCCTTATGTCGATGACATTCTCAATGTCCTCGACCCTGTTGAGAAGACCATCATCCACATCCCCAACGTC
AATTCGCGCGAAAGCACGAAGGACAAAATGCGCGAGGTGGAGCACATCATCGAGGCGCTGGGGGAGTGGCAT
GGCATCGACGCCACCACAGGGTTCCAGCTCGTTAAGCTCCCCGATGACCGCGTGTTGCGCATCGCTGATCTG
GTCGATGACGATGCCTCGAAGCGCGACCGAGTGTCCGCCGCGTTGAAAGACCCGGCTCAGAAGAACAATCGC
GACCATGTGGACATCATCATCGCGCTGGGTATGGCGAAGGAAGGCTTCGACTGGATTTGGTGCGAACACGCG
CTGACCGTGGGCTACCGTGCCAGCTTGACCGAGATCGTTCAGATCATTGGTCGTGCCACCCGAGATGCGCCT
GGAAAGACTCGCGCGAGGTTCACCAACCTTATCGCCGAGCCGGACGCGACCGAGGAAGCGGTCACCGAGGCC
ATTAACGATACGTTGAAGGCCATCGCGGCGAGTCTGCTGATGGAGCAGGTTCTCGCTCCGCGCTTCGAGTTC
AAGCCCAAGAATCCCGACAGCGGCCCGACGCCAGGCTTTAATTATGGCGAGGGTGGCTATGACCCGGACCGC
TGCAACATCGGTGTCAATGAGCAGACAGGGGCCTACCAGATCGAGATCAAGGGCCTCGCCGAACCCAAGAGC
AAAGAGGCAGCGCGCATCTGCCAGGAAGACTTGAACGAAGTGATCGCGGCTTTCGTGCAGGACAAGCACACC
ATCGAGCGTGGCTTGTTCGACGAAGAGCTGGTTCCCGAGGAGCTCACGCAGGTTCGCATGGGCAAGATTATC
AAGGACAAATATCCCGAGCTTGACGCTGAAGATCAGGAGGCGGTACGCCAGCACGCCATCGCCGCCCTCAAC
CTTACGCAGCAGGCCAAGCGGCTTGTCACCGAAGGCGAGAGCGACGGATCGCCCAACACCGCCCTGATCGAT
GGCGTGCGCCGCTTTGCGATGGACGTGCGCGAGCTGGACATTGACCTCATCGACCGCATCAACCCCTTTGGC
GAAGCCTATGCCATCCTCGCCAAGACAATGAGCGAGGACAGCTTGAAGCAGGTCGCGGCGGCCATCTCGGCC
AAACGCACCTCTATCACGCCTGAAGATGCCAAAGTGATCGCCAAGCGCGCGGTTGAGTTCAAACGCGAACGT
GGGAGGGCTCCATCGGTTACCTCGCAGGACGCCTGGGAAAAGCACCTTGCCGAAGGTGCGGCCGCCTTCATG
CGGTTCAGGGCGGAGGGACGCTATGAGTAA