Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: emb|CAE36565.1| (BX640426) conserved hypothetical protein [Bordetella parapertussis]
Identities = 639/684 (93%), Positives = 660/684 (96%)
Sequence:
ATGGCCATATCACATGACAGCAAAGCCGGCACAACGCAGCACCGAAGCGAGACCTTCCTCATGAACAACATC
AAACCTCGGAGCGTCCCCTCCGTATCTGTTACGTATGCGCGTAACGGTGCATCAACCAAGGCTAATGCGCTC
GGTATGCGTCCGATGCAGGAGCGGGCCTATGACAAGCGGGGCGAGCAGTACCTGCTCATCAAGTCGCCGCCC
GCTTCGGGTAAGAGTCGCGCCCTGATGTTCGTGGCGCTCGACAAATTGCAGAACCAGGGCTTGAGGCAAGCC
ATCATCGTCGTGCCCGAGAAGTCCATCGGGGCCAGCTTCAACGATGAGCCGCTGTCAAAGTACGGCTTCTGG
GCTGATTGGCACGTCGAGCCAAAGTGGAACTTGTGCAATGCGCCAGGCAACGACAACGGCGGTAAGGTCAAG
TCCCTCGGCGCGTTCCTCGAAGGCGACGACAAGGTGCTGGTCTGCACGCACGCCACTTTCCGATTCGCGGTC
GATGCCTATGGCATCGAGGCGTTCGACGACCGTCTGATCGCCGTCGATGAGTTTCATCACGTTTCGGCCAAC
CCCGACAACAAGCTGGGCACGCACCTGGGCCAGTTCATCGCGCGAGACAAGACGCACATCGTCGCCATGACC
GGCTCCTACTTCCGGGGCGACGCGGAGGCCGTCCTCGCTCCGCACGACGAGTCGAAATTCGATACCGTTACC
TACACCTACTACGAACAGCTCAACGGCTACGAGTACCTCAAGCAACTCGACATCGGCTATTTCTTCTACAGC
GGGCCTTATGTCGATGACATTCTCAATGTCCTCGACCCTGTTGAGAAGACCATCATCCACATCCCCAACGTC
AATTCGCGCGAAAGCACGAAGGACAAAATGCGCGAGGTGGAGCACATCATCGAGGCGCTGGGGGAGTGGCAT
GGCATCGACGCCACCACAGGGTTCCAGCTCGTTAAGCTCCCCGATGACCGCGTGTTGCGCATCGCTGATCTG
GTCGATGACGATGCCTCGAAGCGCGACCGAGTGTCCGCCGCGTTGAAAGACCCGGCTCAGAAGAACAATCGC
GACCATGTGGACATCATCATCGCGCTGGGTATGGCGAAGGAAGGCTTCGACTGGATTTGGTGCGAACACGCG
CTGACCGTGGGCTACCGTGCCAGCTTGACCGAGATCGTTCAGATCATTGGTCGTGCCACCCGAGATGCGCCT
GGAAAGACTCGCGCGAGGTTCACCAACCTTATCGCCGAGCCGGACGCGACCGAGGAAGCGGTCACCGAGGCC
ATTAACGATACGTTGAAGGCCATCGCGGCGAGTCTGCTGATGGAGCAGGTTCTCGCTCCGCGCTTCGAGTTC
AAGCCCAAGAATCCCGACAGCGGCCCGACGCCAGGCTTTAATTATGGCGAGGGTGGCTATGACCCGGACCGC
TGCAACATCGGTGTCAATGAGCAGACAGGGGCCTACCAGATCGAGATCAAGGGCCTCGCCGAACCCAAGAGC
AAAGAGGCAGCGCGCATCTGCCAGGAAGACTTGAACGAAGTGATCGCGGCTTTCGTGCAGGACAAGCACACC
ATCGAGCGTGGCTTGTTCGACGAAGAGCTGGTTCCCGAGGAGCTCACGCAGGTTCGCATGGGCAAGATTATC
AAGGACAAATATCCCGAGCTTGACGCTGAAGATCAGGAGGCGGTACGCCAGCACGCCATCGCCGCCCTCAAC
CTTACGCAGCAGGCCAAGCGGCTTGTCACCGAAGGCGAGAGCGACGGATCGCCCAACACCGCCCTGATCGAT
GGCGTGCGCCGCTTTGCGATGGACGTGCGCGAGCTGGACATTGACCTCATCGACCGCATCAACCCCTTTGGC
GAAGCCTATGCCATCCTCGCCAAGACAATGAGCGAGGACAGCTTGAAGCAGGTCGCGGCGGCCATCTCGGCC
AAACGCACCTCTATCACGCCTGAAGATGCCAAAGTGATCGCCAAGCGCGCGGTTGAGTTCAAACGCGAACGT
GGGAGGGCTCCATCGGTTACCTCGCAGGACGCCTGGGAAAAGCACCTTGCCGAAGGTGCGGCCGCCTTCATG
CGGTTCAGGGCGGAGGGACGCTATGAGTAA
Translation:
MAISHDSKAGTTQHRSETFLMNNIKPRSVPSVSVTYARNGASTKANALGMRPMQERAYDKRGEQYLLIKSPP
ASGKSRALMFVALDKLQNQGLRQAIIVVPEKSIGASFNDEPLSKYGFWADWHVEPKWNLCNAPGNDNGGKVK
SLGAFLEGDDKVLVCTHATFRFAVDAYGIEAFDDRLIAVDEFHHVSANPDNKLGTHLGQFIARDKTHIVAMT
GSYFRGDAEAVLAPHDESKFDTVTYTYYEQLNGYEYLKQLDIGYFFYSGPYVDDILNVLDPVEKTIIHIPNV
NSRESTKDKMREVEHIIEALGEWHGIDATTGFQLVKLPDDRVLRIADLVDDDASKRDRVSAALKDPAQKNNR
DHVDIIIALGMAKEGFDWIWCEHALTVGYRASLTEIVQIIGRATRDAPGKTRARFTNLIAEPDATEEAVTEA
INDTLKAIAASLLMEQVLAPRFEFKPKNPDSGPTPGFNYGEGGYDPDRCNIGVNEQTGAYQIEIKGLAEPKS
KEAARICQEDLNEVIAAFVQDKHTIERGLFDEELVPEELTQVRMGKIIKDKYPELDAEDQEAVRQHAIAALN
LTQQAKRLVTEGESDGSPNTALIDGVRRFAMDVRELDIDLIDRINPFGEAYAILAKTMSEDSLKQVAAAISA
KRTSITPEDAKVIAKRAVEFKRERGRAPSVTSQDAWEKHLAEGAAAFMRFRAEGRYE*
AnnotationID:6439 GeneID:6438
Modification Date/Time:
2005-10-18 15:03:51
GeneProduct: conserved hypothetical protein
Cell Localization Confidence Code: 5
Functional Category: (14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|33595931| ref|NP_883574.1| hypothetical protein BPP1264 [Bordetella parapertussis 12822]
gi|33566010| emb|CAE36565.1| conserved hypothetical protein [Bordetella parapertussis]
Length=685
Score = 1282 bits (3318), Expect = 0.0
Identities = 639/684 (93%), Positives = 660/684 (96%), Gaps = 0/684 (0%)
gi|69931245| ref|ZP_00627840.1| DEAD/DEAH box helicase [Nitrobacter hamburgensis X14]
Length=692
Score = 1142 bits (2953), Expect = 0.0
Identities = 567/686 (82%), Positives = 620/686 (90%), Gaps = 7/686 (1%)
gi|33240079| ref|NP_875021.1| DNA helicase, predicted restriction/modification system component,
ortholog of BS_yeeB [Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length=687
Score = 969 bits (2505), Expect = 0.0
Identities = 477/680 (70%), Positives = 567/680 (83%), Gaps = 7/680 (1%)
Structural Features: smart00487, DEXDc, DEAD-like helicases superfamily; .
CD-Length = 202 residues, 79.7% aligned
Score = 59.1 bits (142), Expect = 2e-09
COG1061 , SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
CD-Length = 442 residues, 81.9% aligned
Score = 52.4 bits (125), Expect = 2e-07