ViewGene
Locus Name:
GeneID:
Location:

GeneID:6437
TrivialName: PA14_15600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15600
PAO1 Ortholog Locus:
Sequence Length:1185
Protein Length:394
Start: 1323328
Stop: 1324512
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE36566.1| (BX640426) conserved hypothetical protein [Bordetella parapertussis]
Identities = 362/396 (91%), Positives = 375/396 (94%), Gaps = 3/396 (0%)
Sequence:
ATGAGTAACTCCGATCTTGACGACCTGGCGGCAGAGCTGGCCGAGTTCGCGCCGCCTGAGAAGAAAAATGGC
CGCCCAGCCAGCGAGGAGCGTGTCATTGCCGGCTTCGAGGAAATCCAACGCTTCACAGAGCAGCACGGGCGT
GCGCCTCAGCATGGCGAAGACCGCGACATATTCGAGCGCCTATATGCCGTGCGGCTCGACCGTCTACGCGCG
CTACCGGATTGCCGCACCTTGATTGAGCCGCTGGACCATCAGGGCTTGCTTGCTGGGGCATCGACCGTTGCC
GCTTCAGCGGACGAAACTATCGACATCGACGACCTGGCTGCCGAACTAGCGGATGTTGCCGGCGCGGACGAC
ATCACGGTCTTGCGCCATGTCCGTACCAGCGCCGAAAAGCGCGCCGCCGAGGAGGTCGCGGATCGCAAGCCC
TGCGAGGACTTCGAAACCTTCCGGCCCTTGTTCGAGCGCGTGCAAGCGGAAGTCAAGACCGGTATGCGCCAG
TCCCAGCCCATCGAAGCGGGTCGCCGTGCGATTGAAGCCGGGGACTTTTTCGTTCTCGATGGCCTTACTCTC
TACGTTGCCGAGGTCGGCGAGCCGTTGAAAACCACCGCCGGGGAGGTGGACCGCCGCCTGCGCCTCATCTTC
TCCAACGGCACCGAAAGCAATTTGCTGCTGCGCTCGCTCCAGCGTGCGTTCTACAACGACCCTGCCGCGCGG
CGGCTGGCCTCGCCCGAGAGCGGGCAACTCTCCTTTGGCGGCGAGCTTGAGGCGGATGATGTGGAAAGCGGC
ACGATCTACGTCCTGCGCTCCCTGTCCGATCATCCCTACGTCGCCCAGCACCGCGACATCATCCACAAGATG
GGCGTGACGGGCGGCAGGGTTGAAACGCGCATCGCCAACGCCGAGAACGAAGCGACATATCTGCTGGCAAAG
GTCGAGGTCGTTGCGACCTACAAGCTCGCGGGGATCAATCGCATTCGGATGGAGAACCTGTTCCACAGGCTG
TTCGCGACCGCACGGTTGAACATCACTATCAATGACCGCTTCGGTCACCCCGTGCAGCCCGAGGAGTGGTTT
CTTGTTCCGCTGTTCGTTATCGACGAGGCCGTCGCGCGCATCAAGGATGGCAGCATCACCGGCTACATCTAC
GATCCCAAGGCTGCGAAGCTGGTGAAGGCATAG
Translation:
MSNSDLDDLAAELAEFAPPEKKNGRPASEERVIAGFEEIQRFTEQHGRAPQHGEDRDIFERLYAVRLDRLRA
LPDCRTLIEPLDHQGLLAGASTVAASADETIDIDDLAAELADVAGADDITVLRHVRTSAEKRAAEEVADRKP
CEDFETFRPLFERVQAEVKTGMRQSQPIEAGRRAIEAGDFFVLDGLTLYVAEVGEPLKTTAGEVDRRLRLIF
SNGTESNLLLRSLQRAFYNDPAARRLASPESGQLSFGGELEADDVESGTIYVLRSLSDHPYVAQHRDIIHKM
GVTGGRVETRIANAENEATYLLAKVEVVATYKLAGINRIRMENLFHRLFATARLNITINDRFGHPVQPEEWF
LVPLFVIDEAVARIKDGSITGYIYDPKAAKLVKA*
AnnotationID:6438GeneID:6437
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|33595932|ref|NP_883575.1|  hypothetical protein BPP1265 [Bordetella parapertussis 12822]
gi|33566011|emb|CAE36566.1|  conserved hypothetical protein [Bordetella parapertussis]
     Length=398
     Score =  711 bits (1836),  Expect = 0.0
     Identities = 362/396 (91%), Positives = 375/396 (94%), Gaps = 3/396 (0%)

gi|69931246|ref|ZP_00627841.1|  conserved hypothetical protein [Nitrobacter hamburgensis X14]
gi|69140476|gb|EAN59118.1|  conserved hypothetical protein [Nitrobacter hamburgensis X14]
     Length=409
     Score =  460 bits (1184),  Expect = 3e-128
     Identities = 232/389 (59%), Positives = 293/389 (75%), Gaps = 2/389 (0%)

gi|21231549|ref|NP_637466.1|  YeeC-like protein [Xanthomonas campestris pv. campestris str. 
            ATCC 33913]
gi|66768394|ref|YP_243156.1|  YeeC-like protein [Xanthomonas campestris pv. campestris str. 8004]
     Length=393
     Score =  439 bits (1130),  Expect = 6e-122
     Identities = 230/396 (58%), Positives = 293/396 (73%), Gaps = 7/396 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12684




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29979




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6437
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199197
                           emb|CAE36566.1|
                           (BX640426) conserved hypothetical protein [Bordetella parapertussis]
                           398
                           90.95
                           94.22
                           4
                           1839.0
     

     
     
199198
                           gb|AAM41390.1|
                           (AE012317) YeeC-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           397
                           57.93
                           73.80
                           7
                           1140.0
     

     
     
199199
                           gb|AAP99672.1|
                           (AE017162) Uncharacterized conserved protein [Prochlorococcus marinus subsp. marinus str. CCMP1375]
                           400
                           44.50
                           64.50
                           13
                           856.0
     

     






      

          
GC ORFID: 49439How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3630609Stop: 3629425

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGTAACTCCGATCTTGACGACCTGGCGGCAGAGCTGGCCGAGTTCGCGCCGCCTGAGAAGAAAAATGGC 
CGCCCAGCCAGCGAGGAGCGTGTCATTGCCGGCTTCGAGGAAATCCAACGCTTCACAGAGCAGCACGGGCGT 
GCGCCTCAGCATGGCGAAGACCGCGACATATTCGAGCGCCTATATGCCGTGCGGCTCGACCGTCTACGCGCG 
CTACCGGATTGCCGCACCTTGATTGAGCCGCTGGACCATCAGGGCTTGCTTGCTGGGGCATCGACCGTTGCC 
GCTTCAGCGGACGAAACTATCGACATCGACGACCTGGCTGCCGAACTAGCGGATGTTGCCGGCGCGGACGAC 
ATCACGGTCTTGCGCCATGTCCGTACCAGCGCCGAAAAGCGCGCCGCCGAGGAGGTCGCGGATCGCAAGCCC 
TGCGAGGACTTCGAAACCTTCCGGCCCTTGTTCGAGCGCGTGCAAGCGGAAGTCAAGACCGGTATGCGCCAG 
TCCCAGCCCATCGAAGCGGGTCGCCGTGCGATTGAAGCCGGGGACTTTTTCGTTCTCGATGGCCTTACTCTC 
TACGTTGCCGAGGTCGGCGAGCCGTTGAAAACCACCGCCGGGGAGGTGGACCGCCGCCTGCGCCTCATCTTC 
TCCAACGGCACCGAAAGCAATTTGCTGCTGCGCTCGCTCCAGCGTGCGTTCTACAACGACCCTGCCGCGCGG 
CGGCTGGCCTCGCCCGAGAGCGGGCAACTCTCCTTTGGCGGCGAGCTTGAGGCGGATGATGTGGAAAGCGGC 
ACGATCTACGTCCTGCGCTCCCTGTCCGATCATCCCTACGTCGCCCAGCACCGCGACATCATCCACAAGATG 
GGCGTGACGGGCGGCAGGGTTGAAACGCGCATCGCCAACGCCGAGAACGAAGCGACATATCTGCTGGCAAAG 
GTCGAGGTCGTTGCGACCTACAAGCTCGCGGGGATCAATCGCATTCGGATGGAGAACCTGTTCCACAGGCTG 
TTCGCGACCGCACGGTTGAACATCACTATCAATGACCGCTTCGGTCACCCCGTGCAGCCCGAGGAGTGGTTT 
CTTGTTCCGCTGTTCGTTATCGACGAGGCCGTCGCGCGCATCAAGGATGGCAGCATCACCGGCTACATCTAC 
GATCCCAAGGCTGCGAAGCTGGTGAAGGCATAG