ViewGene
Locus Name:
GeneID:
Location:

GeneID:6435
TrivialName: PA14_15620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15620
PAO1 Ortholog Locus:
Sequence Length:963
Protein Length:320
Start: 1328012
Stop: 1328974
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC75149.1| (AP005050) putative oxidoreductase [Streptomyces avermitilis MA-4680]
Identities = 217/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)
Sequence:
ATGACTATCAGGCAAACCCCCATCAATTCGGGATTCGGAGCGAAAACGCAGGCCAGCGAGGTGATGGCGGGG
CAAGACCTCTCCGGAAAGACCGCCATCGTGACCGGCGGCTACTCCGGTCTTGGCCTGGAAACCACGAAGGCG
CTGGCCTACGCGGGCGCGCGGGTCATCGTTACGGCGCGCAGACCGGATGTGGCAAGGGAGGCGCTGCTCGGG
CTCGACGAAGTCGAGGTGCAGGCGCTCGACCTGGCCGAGTTGGCCTGCGTGCGTCGGTTCGCCGAGGCCTTC
TCCGCCTCGCGCCGTCGTGCCGATATCGTCATCAACAACGCCGGTGTGATGGCCTGTCCTGAGACCCGCGTA
GGCCCGGGCTGGGAGGCGCAGTTCGCGACCAATCACCTTGGCCACTACGCCCTGGTGAACCTCTTGTGGCCG
TCGCTCGCGGACGACGCGCGAGTGGTCGCCGTGTCCTCCGCCGGGCACCACTACTCGGCGATCCGCTGGGAC
GACGTGCAGTTCGAACGGGGCTACGACAAGTGGCTGGCTTATGCGCAGTCGAAGACTGCCAACGCCCTGTTC
GCCATCCAGTTGGATGCGCTGGGTCGCGAGAGGGGTGTGCGTGCCTTCGCAGTGCATCCGGGCAGCATCGCC
ACACCGTTGCAACGCCATGTTCCACGGGCGGAGATGATCGCCCTGGGCTGGATGGACGAAGCCGGCAATCCG
GCCAGCCCCGATACGCTCAAGACCCCGCAGCAGGGGGCTGCCACCCAGCTATGGGCTGCGACCTCTCCGCTG
TTGGCGGGGATGGGCGGGCTCTACTGCGAGGATTGCGACATCGCAGGCGTCGCGCCGGACGACTCGCGCACC
CTGGCCGGCGTACGCGAACATGCGATCGATCCGGAGCAGGCCCGCCGCCTCTGGAGGCTTTCGGCGACGCTC
ACCGGGATCGACGCATTCGCGTCCTAG
Translation:
MTIRQTPINSGFGAKTQASEVMAGQDLSGKTAIVTGGYSGLGLETTKALAYAGARVIVTARRPDVAREALLG
LDEVEVQALDLAELACVRRFAEAFSASRRRADIVINNAGVMACPETRVGPGWEAQFATNHLGHYALVNLLWP
SLADDARVVAVSSAGHHYSAIRWDDVQFERGYDKWLAYAQSKTANALFAIQLDALGRERGVRAFAVHPGSIA
TPLQRHVPRAEMIALGWMDEAGNPASPDTLKTPQQGAATQLWAATSPLLAGMGGLYCEDCDIAGVAPDDSRT
LAGVREHAIDPEQARRLWRLSATLTGIDAFAS*
AnnotationID:6436GeneID:6435
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:53
Gene Name:
Confidence Code:4
GeneProduct:possible dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1028
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|29833980|ref|NP_828614.1|  putative dehydrogenase [Streptomyces avermitilis MA-4680]
     Length=322
     Score =  430 bits (1105),  Expect = 4e-119
     Identities = 217/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)

gi|46313860|ref|ZP_00214448.1|  COG1028: Dehydrogenases with different specificities (related to short-chain 
alcohol dehydrogenases) [Burkholderia cepacia R18194]
     Length=321
     Score =  424 bits (1090),  Expect = 2e-117
     Identities = 222/321 (69%), Positives = 248/321 (77%), Gaps = 5/321 (1%)






 
Structural Features:
COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only].
             CD-Length = 251 residues,  82.5% aligned
             Score = 88.7 bits (219), Expect = 7e-19






   
Genomic Context:






   
Comment:


















    ReferenceID:12680




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16940




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Blast 







    
Data:


    		




 
URL:

















    ReferenceID:16941




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
COG from BlastP






    
Reference Type:Blast 







    
Data:


    		




 
URL:

















    ReferenceID:29975




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6435
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199181
                           dbj|BAC75149.1|
                           (AP005050) putative oxidoreductase [Streptomyces avermitilis MA-4680]
                           323
                           67.18
                           76.78
                           4
                           1109.0
     

     
     
199182
                           emb|CAB88815.1|
                           (AL939114) putative oxidoreductase [Streptomyces coelicolor A3(2)]
                           332
                           55.12
                           65.06
                           21
                           846.0
     

     
     
199183
                           gb|AAK22385.1|
                           (AE005713) oxidoreductase, short-chain dehydrogenase/reductase family [Caulobacter crescentus CB15]
                           334
                           47.30
                           60.17
                           25
                           707.0
     

     
     
199184
                           gb|AAF12130.1|AE002088_7
                           (AE002088) oxidoreductase, short-chain dehydrogenase/reductase family [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           349
                           46.13
                           57.02
                           42
                           662.0
     

     
     
199185
                           gb|AAK06348.1|AE006454_1
                           (AE006454) oxidoreductase [Lactococcus lactis subsp. lactis]
                           347
                           41.78
                           57.92
                           35
                           616.0
     

     






      

          
GC ORFID: 49437How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3625925Stop: 3624963

          
Length: 963


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACTATCAGGCAAACCCCCATCAATTCGGGATTCGGAGCGAAAACGCAGGCCAGCGAGGTGATGGCGGGG 
CAAGACCTCTCCGGAAAGACCGCCATCGTGACCGGCGGCTACTCCGGTCTTGGCCTGGAAACCACGAAGGCG 
CTGGCCTACGCGGGCGCGCGGGTCATCGTTACGGCGCGCAGACCGGATGTGGCAAGGGAGGCGCTGCTCGGG 
CTCGACGAAGTCGAGGTGCAGGCGCTCGACCTGGCCGAGTTGGCCTGCGTGCGTCGGTTCGCCGAGGCCTTC 
TCCGCCTCGCGCCGTCGTGCCGATATCGTCATCAACAACGCCGGTGTGATGGCCTGTCCTGAGACCCGCGTA 
GGCCCGGGCTGGGAGGCGCAGTTCGCGACCAATCACCTTGGCCACTACGCCCTGGTGAACCTCTTGTGGCCG 
TCGCTCGCGGACGACGCGCGAGTGGTCGCCGTGTCCTCCGCCGGGCACCACTACTCGGCGATCCGCTGGGAC 
GACGTGCAGTTCGAACGGGGCTACGACAAGTGGCTGGCTTATGCGCAGTCGAAGACTGCCAACGCCCTGTTC 
GCCATCCAGTTGGATGCGCTGGGTCGCGAGAGGGGTGTGCGTGCCTTCGCAGTGCATCCGGGCAGCATCGCC 
ACACCGTTGCAACGCCATGTTCCACGGGCGGAGATGATCGCCCTGGGCTGGATGGACGAAGCCGGCAATCCG 
GCCAGCCCCGATACGCTCAAGACCCCGCAGCAGGGGGCTGCCACCCAGCTATGGGCTGCGACCTCTCCGCTG 
TTGGCGGGGATGGGCGGGCTCTACTGCGAGGATTGCGACATCGCAGGCGTCGCGCCGGACGACTCGCGCACC 
CTGGCCGGCGTACGCGAACATGCGATCGATCCGGAGCAGGCCCGCCGCCTCTGGAGGCTTTCGGCGACGCTC 
ACCGGGATCGACGCATTCGCGTCCTAG