ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6434

TrivialName: PA14_15630

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_15630

PAO1 Ortholog Locus:

Sequence Length: 1299

Protein Length: 432

Start: 1328895

Stop: 1330193

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06920.1|AE004773_9 (AE004773) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 11/371 (2%)

Sequence:

ATGCGATCGATCCGGAGCAGGCCCGCCGCCTCTGGAGGCTTTCGGCGACGCTCACCGGGATCGACGCATTCG
CGTCCTAGTCGAGCACACGGAAGACGCCGCGGATACCGCGCTTTCGCTGTCCATCAAACAAGCACCGGGATC
GATCGAATGACCTCCAGCAGCGTAGGGAAAGGTATTGCCATCTCCGGCATGTTCTTCATGCTCGGACTGTGT
TTCGGGAGCCTCAGCTCCCGGATGGCCACGATAAAAGACGGACTCCAGCTTTCCGACGGGGTGTTCGGCAGT
GCGCTTTTCGCCATGTCGGCCGGGGTGGTGCTTTCGTTGCCGGTATCCGGCTGGATGATCGCGAAGCTCGGC
AGCAGAAACGTTGGAGTAACGGCGATTCTCACGAACGCCGTTCTGCTGTCCTTGGTTCCCTTGGCTTCTAGC
GTCTACCAGCTTGCTGCCCTGTTGTTCGTATCGGGGTTCTCCTATAGCGCGGTCAATGTGTCGAACAATACC
CAGGCAAGCCTGTCGGAGGCGCTCAGCGGAAAGACCGAGTTGCCGTTCTTCCACGGTATATGGGGGTTGGCG
GGATTCGTCGGCGCCGGGTTCGGGGCGTTGATGATCGGGCAGGACTTTGCCTTGTCCACGCATTTCGGCGTG
ATATCGGTGATCGCCTTCCTGGCCGCCCTGGCCTGCTGGCGCTTTCTCCACGACCAGCCTGGCGCGGAGCGG
GTCGGGCGGGCCTTCGCGATGCCGGACAGGAGGCTTTTCAACTACGGGCTGATCGTTTTTTTCTCGATGGCC
TGCGAAGGCATCATGTACGACTGGAGCGTCGTCTATTTCCAGGACGTGGTATCGGCCGAGCGGCAACTGGTC
GGAGTCGGCTTCATGGTATTCATGGGCGCCATGACTGTCGGCCGGCTTCTGCTGAACCGGGTCGCCGATCGT
TTCGGTACGCGCAGCACCTTGCAGTGGAGCGGGGGGCTCGCCTTGATCGGCATGGTCACGACGATTGCCTAT
CCGAGCCTGCCGGCGTCGATCATTGGCTTCTGCCTTGTCGGTCTCGGCATCTGTACCGTCATTCCGCTGGTG
GCGGGGGCCGCCGCCCGCTCCTCGAGCATGGCGCCGAGTTCGGCTATCGCAGCCGTTCTGACGATAGGATTC
CTGGGCACGTTGATCGGCCCGCCGCTGATCGGCTTTCTCTCCGAAGCGTTCGGCCTGCGTTATGCCTTCGGC
GCGTGCGTGGTCCTGGCCATCGGGATCATCCTTCGGGCGGGAAAGATACCGCGGCAAGCTCCGTCGGTCGTT
TGA

Translation:

MRSIRSRPAASGGFRRRSPGSTHSRPSRAHGRRRGYRAFAVHQTSTGIDRMTSSSVGKGIAISGMFFMLGLC
FGSLSSRMATIKDGLQLSDGVFGSALFAMSAGVVLSLPVSGWMIAKLGSRNVGVTAILTNAVLLSLVPLASS
VYQLAALLFVSGFSYSAVNVSNNTQASLSEALSGKTELPFFHGIWGLAGFVGAGFGALMIGQDFALSTHFGV
ISVIAFLAALACWRFLHDQPGAERVGRAFAMPDRRLFNYGLIVFFSMACEGIMYDWSVVYFQDVVSAERQLV
GVGFMVFMGAMTVGRLLLNRVADRFGTRSTLQWSGGLALIGMVTTIAYPSLPASIIGFCLVGLGICTVIPLV
AGAAARSSSMAPSSAIAAVLTIGFLGTLIGPPLIGFLSEAFGLRYAFGACVVLAIGIILRAGKIPRQAPSVV
*

AnnotationID:6435 GeneID:6434

AnnotatorUID: danlee

Modification Date/Time: 2005-10-18 15:03:38

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|15598728|ref|NP_252222.1|  hypothetical protein PA3532 [Pseudomonas aeruginosa PAO1]
gi|11349935|pir||B83205  hypothetical protein PA3532 [imported] - Pseudomonas aeruginosa 
            (strain PAO1)
     Length=383
     Score =  208 bits (530),  Expect = 3e-52
     Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 11/371 (2%)

gi|48765011|ref|ZP_00269562.1|  COG0477: Permeases of the major facilitator superfamily [Rhodospirillum 
            rubrum]
     Length=392
     Score =  200 bits (509),  Expect = 7e-50
     Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 11/368 (2%)

Structural Features:

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].
             CD-Length = 394 residues, only  55.6% aligned
             Score = 38.6 bits (90), Expect = 0.001

Genomic Context:

Comment:

ReferenceID:12678

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16937

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

COG

Reference Type: Blast (text/plain)

Data: cog6434.cgi

URL:

ReferenceID:16938

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

Closest relative with function

Reference Type: Online (text/plain)

Data: 6434ref.cgi

URL:

ReferenceID:29973

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49436`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3625042`	Stop: `3623744`
Length: `1299`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGATCGATCCGGAGCAGGCCCGCCGCCTCTGGAGGCTTTCGGCGACGCTCACCGGGATCGACGCATTCG CGTCCTAGTCGAGCACACGGAAGACGCCGCGGATACCGCGCTTTCGCTGTCCATCAAACAAGCACCGGGATC GATCGAATGACCTCCAGCAGCGTAGGGAAAGGTATTGCCATCTCCGGCATGTTCTTCATGCTCGGACTGTGT TTCGGGAGCCTCAGCTCCCGGATGGCCACGATAAAAGACGGACTCCAGCTTTCCGACGGGGTGTTCGGCAGT GCGCTTTTCGCCATGTCGGCCGGGGTGGTGCTTTCGTTGCCGGTATCCGGCTGGATGATCGCGAAGCTCGGC AGCAGAAACGTTGGAGTAACGGCGATTCTCACGAACGCCGTTCTGCTGTCCTTGGTTCCCTTGGCTTCTAGC GTCTACCAGCTTGCTGCCCTGTTGTTCGTATCGGGGTTCTCCTATAGCGCGGTCAATGTGTCGAACAATACC CAGGCAAGCCTGTCGGAGGCGCTCAGCGGAAAGACCGAGTTGCCGTTCTTCCACGGTATATGGGGGTTGGCG GGATTCGTCGGCGCCGGGTTCGGGGCGTTGATGATCGGGCAGGACTTTGCCTTGTCCACGCATTTCGGCGTG ATATCGGTGATCGCCTTCCTGGCCGCCCTGGCCTGCTGGCGCTTTCTCCACGACCAGCCTGGCGCGGAGCGG GTCGGGCGGGCCTTCGCGATGCCGGACAGGAGGCTTTTCAACTACGGGCTGATCGTTTTTTTCTCGATGGCC TGCGAAGGCATCATGTACGACTGGAGCGTCGTCTATTTCCAGGACGTGGTATCGGCCGAGCGGCAACTGGTC GGAGTCGGCTTCATGGTATTCATGGGCGCCATGACTGTCGGCCGGCTTCTGCTGAACCGGGTCGCCGATCGT TTCGGTACGCGCAGCACCTTGCAGTGGAGCGGGGGGCTCGCCTTGATCGGCATGGTCACGACGATTGCCTAT CCGAGCCTGCCGGCGTCGATCATTGGCTTCTGCCTTGTCGGTCTCGGCATCTGTACCGTCATTCCGCTGGTG GCGGGGGCCGCCGCCCGCTCCTCGAGCATGGCGCCGAGTTCGGCTATCGCAGCCGTTCTGACGATAGGATTC CTGGGCACGTTGATCGGCCCGCCGCTGATCGGCTTTCTCTCCGAAGCGTTCGGCCTGCGTTATGCCTTCGGC GCGTGCGTGGTCCTGGCCATCGGGATCATCCTTCGGGCGGGAAAGATACCGCGGCAAGCTCCGTCGGTCGTT TGA