ViewGene
Locus Name:
GeneID:
Location:

GeneID:6432
TrivialName: PA14_15650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15650
PAO1 Ortholog Locus:
Sequence Length:957
Protein Length:318
Start: 1331201
Stop: 1330245
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO61188.1| (AY225511) putative AraC-like activator [Streptomyces lividans]
Identities = 139/298 (46%), Positives = 184/298 (61%), Gaps = 1/298 (0%)
Sequence:
ATGCAAAAAACTCCTATCTTCTATCGCGATCGTCCAGCATCAATGGATCCTCTCTCCGAAGTCCTTTCCCTG
GTCAACAGCCAGGACTCCTCCTTCGGCGCCCTGAAGACCGGCGGCGATTGGGCACTCCGCTTTCCGGCACCG
GAAGGTGTGAAGTTCAACGTGGTAGTCCGTGGCGCTTGCCTGCTGGCCACCGACGGCATGGAAGAGCCGATC
CGACTGGAAGCGGGCGACTGCTTTCTGGTGTCCTGCCGCAGTCCGCTGCTGGTCGGCAGCGATCTATCCCTT
CCCGCCGCCGACGCCACGCTGCTCTACCGAGATGCCCCTGACGGCGTCGCGCACTATGGGGAAAGCGAGGAT
TGTTTCCTGATCGGCGGTCGCTTCGCCTTTGGCGAAGAAGCCAACCTGCTGTTCGACGGGCTGCCTCCGGTG
ACCGTCGTGAAAAGCGATTCGGACCAGGCATCCGTACTGAGCTGGGCGCTGCACCGACTGGCCCATGAGTTT
TCCTGCCCGTCACCCGGTAGCGCGCTGATCGCTCGCCACCTGGGCCACATCATGCTGGCGCAGGTGCTGCGG
CTCTATCTCGCCGGCGAGGGCAGCGACACGCCCAGTTGGCTGCTGGCGTTGTCCGATCCGCGCATAGGCGCG
GCGATCCGGGCGATCCACGCCGAGCCGGCcaAAGTCTGGACGGTCGAGCGCCTGGCCGACGTAGCGGGTACC
TCGCGCTCCACGCTGGCCCTGCGTTTCAAGCAAACCGCGGGACTGGCGCCGCTGGAATATGTATCGCACTGG
CGTATGCAATTGGCCGCTCGCGCCCTGCGCGACAGCAAAGCGACGATTTCCTCGATCGCGCAAACCCTGGGC
TACGGCTCGGACAGCGCTTTCAGCAACGCCTTCAAACGCATCATGAAATGCTCGCCCAGAGACTATCGCAGC
CGGCAGGCCAGCAGGGCATAG
Translation:
MQKTPIFYRDRPASMDPLSEVLSLVNSQDSSFGALKTGGDWALRFPAPEGVKFNVVVRGACLLATDGMEEPI
RLEAGDCFLVSCRSPLLVGSDLSLPAADATLLYRDAPDGVAHYGESEDCFLIGGRFAFGEEANLLFDGLPPV
TVVKSDSDQASVLSWALHRLAHEFSCPSPGSALIARHLGHIMLAQVLRLYLAGEGSDTPSWLLALSDPRIGA
AIRAIHAEPAKVWTVERLADVAGTSRSTLALRFKQTAGLAPLEYVSHWRMQLAARALRDSKATISSIAQTLG
YGSDSAFSNAFKRIMKCSPRDYRSRQASRA*
AnnotationID:6433GeneID:6432
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|46313861|ref|ZP_00214449.1|  COG2207: AraC-type DNA-binding domain-containing proteins [Burkholderia cepacia R18194]
     Length=306
     Score =  335 bits (858),  Expect = 2e-90
     Identities = 165/304 (54%), Positives = 208/304 (68%), Gaps = 0/304 (0%)

gi|67662432|ref|ZP_00459721.1|  Helix-turn-helix, AraC type [Burkholderia cenocepacia HI2424]
gi|67660357|ref|ZP_00457706.1|  Helix-turn-helix, AraC type [Burkholderia cenocepacia AU 1054]

     Length=308
     Score =  321 bits (823),  Expect = 2e-86
     Identities = 159/297 (53%), Positives = 197/297 (66%), Gaps = 0/297 (0%)

gi|32455604|ref|NP_862087.1|  putative AraC-like activator [Streptomyces lividans]
     Length=304
     Score =  268 bits (684),  Expect = 2e-70
     Identities = 139/298 (46%), Positives = 184/298 (61%), Gaps = 1/298 (0%)







 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein; .
             CD-Length = 84 residues,  98.8% aligned
             Score = 91.4 bits (227), Expect = 1e-19






   
Genomic Context:






   
Comment:


















    ReferenceID:12675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16935




  
Author/Investigator(s):
        





  
Title:
        COGs from pBLAST




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Online (text/plain)







    
Data:6432.html


    		




 
URL:

















    ReferenceID:16936




  
Author/Investigator(s):
        





  
Title:
        PAPER for Functional Reference




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Online (text/plain)







    
Data:reference6432.cgi


    		




 
URL:

















    ReferenceID:29969




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6432
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199173
                           gb|AAO61188.1|
                           (AY225511) putative AraC-like activator [Streptomyces lividans]
                           319
                           43.57
                           57.68
                           16
                           682.0
     

     
     
199174
                           emb|CAA77612.1|
                           (Z11519) probably a transcription activator [Streptomyces lividans]
                           319
                           43.57
                           57.68
                           16
                           682.0
     

     
     
199175
                           emb|CAC36843.1|
                           (AL590464) putative AraC-family transcriptional regulator [Streptomyces coelicolor A3(2)]
                           319
                           43.57
                           57.36
                           16
                           680.0
     

     
     
199176
                           emb|CAC36558.1|
                           (AL590463) putative AraC-family transcriptional regulator [Streptomyces coelicolor A3(2)]
                           319
                           43.57
                           57.36
                           16
                           680.0
     

     
     
199177
                           gb|AAF26373.1|AF204735_5
                           (AF204735) putative regulator [Streptomyces coelicolor A3(2)]
                           319
                           43.57
                           57.36
                           16
                           680.0
     

     






      

          
GC ORFID: 49434How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3622736Stop: 3623692

          
Length: 957


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAAAAAACTCCTATCTTCTATCGCGATCGTCCAGCATCAATGGATCCTCTCTCCGAAGTCCTTTCCCTG 
GTCAACAGCCAGGACTCCTCCTTCGGCGCCCTGAAGACCGGCGGCGATTGGGCACTCCGCTTTCCGGCACCG 
GAAGGTGTGAAGTTCAACGTGGTAGTCCGTGGCGCTTGCCTGCTGGCCACCGACGGCATGGAAGAGCCGATC 
CGACTGGAAGCGGGCGACTGCTTTCTGGTGTCCTGCCGCAGTCCGCTGCTGGTCGGCAGCGATCTATCCCTT 
CCCGCCGCCGACGCCACGCTGCTCTACCGAGATGCCCCTGACGGCGTCGCGCACTATGGGGAAAGCGAGGAT 
TGTTTCCTGATCGGCGGTCGCTTCGCCTTTGGCGAAGAAGCCAACCTGCTGTTCGACGGGCTGCCTCCGGTG 
ACCGTCGTGAAAAGCGATTCGGACCAGGCATCCGTACTGAGCTGGGCGCTGCACCGACTGGCCCATGAGTTT 
TCCTGCCCGTCACCCGGTAGCGCGCTGATCGCTCGCCACCTGGGCCACATCATGCTGGCGCAGGTGCTGCGG 
CTCTATCTCGCCGGCGAGGGCAGCGACACGCCCAGTTGGCTGCTGGCGTTGTCCGATCCGCGCATAGGCGCG 
GCGATCCGGGCGATCCACGCCGAGCCGGCcaAAGTCTGGACGGTCGAGCGCCTGGCCGACGTAGCGGGTACC 
TCGCGCTCCACGCTGGCCCTGCGTTTCAAGCAAACCGCGGGACTGGCGCCGCTGGAATATGTATCGCACTGG 
CGTATGCAATTGGCCGCTCGCGCCCTGCGCGACAGCAAAGCGACGATTTCCTCGATCGCGCAAACCCTGGGC 
TACGGCTCGGACAGCGCTTTCAGCAACGCCTTCAAACGCATCATGAAATGCTCGCCCAGAGACTATCGCAGC 
CGGCAGGCCAGCAGGGCATAG