ViewGene
Locus Name:
GeneID:
Location:

GeneID:643
TrivialName: PA14_63010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63010
PAO1 Ortholog Locus:PA4763
Sequence Length:1677
Protein Length:558
Start: 5621858
Stop: 5623534
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08149.1|AE004890_2 (AE004890) DNA repair protein RecN [Pseudomonas aeruginosa PAO1]
Identities = 555/558 (99%), Positives = 558/558 (100%)
Sequence:
ATGCTGGTTCACCTGTCCGTTCACAACTACGCCATCGTCGAGCACTTGGATCTCGAACTCGCTACCGGCATG
AGCGTGATCACCGGCGAAACCGGCGCGGGCAAGTCGATCATGCTCGACGCCCTCGGCCTTACCCTCGGCGAC
CGCGCCGACAGCGGCGCGGTACGTCCCGGAGCGGACAAGGCCGACATTCTCGCCAGCTTCGACGTCAGCGCC
ATCGCCGAGGCCCGCGACTGGCTCGCCGAGCGCGACCTGGAACAGGACGGTCCGTGCATCCTGCGCCGGGTG
ATCACTGCCGAAGGTCGCTCGCGTGCCTACATCAACGGCACGCCCTGCCCTCTGGGCGACCTGAAGAGCCTG
GGCGAACTGCTGATCGACATCCATAGCCAGCACGAGCACCAGTCGCTGCTGAAGAGCGAGACCCACCGTCGC
CTGCTCGACGAGTACGCCGGCTGCCAGGAGCTGGCGCGCCAGGTGCAGCTCGCCGCGCAACGCTGGAAGCAG
ACCAGCCAGGAACTCGAACGCCTGTCGCGTAGCGGCGACGAACAACGCGCCCGCCACCAGTTGCTCAGCTAC
CAGCTGGAAGAACTGGAAAACCTGTCCCTCGGCGAAAACGAACTGGAAAGCCTGGAGCAGGAGCAGAAGACC
CTGAGCAACGCCGAAAGCCTGCTCGCCGCCTGCCGCCAAGTCGTGGAAATGTGCAGCGAGAGCGATGCCGGC
AACGTCCTTTCCGCGCTCAATGCCAGCCTCAGCCGCCTGACCTCGTTCAGCGGCCAGCCCGCCGCCCTCGGC
GAAGCGGTCAACCTGTTGTCCAGCGCGCAGATCCAGGTCGAGGAGGCGATCGGCGAACTGAACCGCTTCGTC
GACCACTTCGATGCCGATCCCAATCGCCAGCAGCAGGTCGAGGAGCGCCTGGACGTCATTTATTCCCTGGCG
CGCAAGCACCGGGTCCAGCCCGCCGAACTGGCCGACCTGCAGCAGCGCCTGTTCGACGAACTGGAGGCGCTG
AACGCCGACGACGAAGCGGTCGGACGCCTGGGCGACGAGCTGGCCGCCTACGCCCGGCATTACCAGGAAAAA
GCCGACGAACTGAGCCGCCTGCGCCAGGCCGCGGCCGCACCTCTTGCCGCCAGCGTGGAACAGGAGATGCAG
CGCCTGGGCATGCCCGGAGGGCGCtTCGCCATCGTCCTGCATCCCGGCGACAGCGCCGAGCCGCAGGCCAAC
GGACTGGAAAGCGTGGAGTTCCTGGTCAGCGCCAACCCCGGGCAGCCGTTGAAAGGGCTGGCCAAGGTCGCC
TCGGGCGGCGAACTGTCGCGGATCAGCCTGGCGATCCAGGTGATCACGGCACAGACCTCGCGCATCCCCACC
CTGGTCTTCGACGAAGTCGACGTCGGCATCGGAGGCCCCACCGCCGAAGTGGTCGGACAGTTGCTGCGTCGC
CTCGGCGAACGCGGCCAGGTCCTCACCGTGACCCACTTGCCGCAGGTCGCCGCCCAGGGCCACCAGCACCTG
TTCGTGCACAAGGAACGCGGCAGCAGCGAAACCCGCACGGCGGTCGCCACCCTGAACAAGGCCCAGCGGATC
GAGGAGATCGCCCGCATGCTCGGCGGCGTCGACCTGACCAAGGAATCCCTGGCCCACGCGAAGAAACTGGTC
AACCTGGCCGCCCAGAACTGA
Translation:
MLVHLSVHNYAIVEHLDLELATGMSVITGETGAGKSIMLDALGLTLGDRADSGAVRPGADKADILASFDVSA
IAEARDWLAERDLEQDGPCILRRVITAEGRSRAYINGTPCPLGDLKSLGELLIDIHSQHEHQSLLKSETHRR
LLDEYAGCQELARQVQLAAQRWKQTSQELERLSRSGDEQRARHQLLSYQLEELENLSLGENELESLEQEQKT
LSNAESLLAACRQVVEMCSESDAGNVLSALNASLSRLTSFSGQPAALGEAVNLLSSAQIQVEEAIGELNRFV
DHFDADPNRQQQVEERLDVIYSLARKHRVQPAELADLQQRLFDELEALNADDEAVGRLGDELAAYARHYQEK
ADELSRLRQAAAAPLAASVEQEMQRLGMPGGRFAIVLHPGDSAEPQANGLESVEFLVSANPGQPLKGLAKVA
SGGELSRISLAIQVITAQTSRIPTLVFDEVDVGIGGPTAEVVGQLLRRLGERGQVLTVTHLPQVAAQGHQHL
FVHKERGSSETRTAVATLNKAQRIEEIARMLGGVDLTKESLAHAKKLVNLAAQN*
AnnotationID:652GeneID:643
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 11:11:40
Gene Name:recN
Confidence Code:2
GeneProduct:DNA repair protein RecN
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0497
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57955.1| (AE016872) DNA repair protein RecN [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 557

 Score =  860 bits (2222), Expect = 0.0
 Identities = 441/552 (79%), Positives = 483/552 (87%)

>gb|AAN70301.1|AE016671_2 (AE016791) DNA repair protein RecN [Pseudomonas putida KT2440]
          Length = 557

 Score =  842 bits (2175), Expect = 0.0
 Identities = 429/552 (77%), Positives = 479/552 (86%)

>gb|AAC75665.1| (AE000347) protein used in recombination and DNA repair
           [Escherichia coli K12]
          Length = 553

 Score =  448 bits (1153), Expect = e-125
 Identities = 250/554 (45%), Positives = 343/554 (61%), Gaps = 5/554 (0%)






 
Structural Features:
COG0497, RecN, ATPase involved in DNA repair 
[DNA replication, recombination, and repair]
CD-Length = 557 residues, 100.0% aligned
Score =  595 bits (1536), Expect = 4e-171
Identities = 276/559 (49%), Positives = 360/559 (64%), Gaps = 4/559 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1289




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18431




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37697




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:643_cdd.html


    		




 
URL:

















    ReferenceID:37715




  
Author/Investigator(s):
        Rostas K, Morton SJ, Picksley SM, Lloyd RG.





  
Title:
        Nucleotide sequence and LexA regulation of the Escherichia coli recN gene.




  
PubMed:
        3037486


MedLine:
        




    
Source:
Nucleic Acids Res. 1987 Jul 10;15(13):5041-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3037486

















    ReferenceID:37716




  
Author/Investigator(s):
        Van Hoy BE, Hoch JA.





  
Title:
        Characterization of the spoIVB and recN loci of Bacillus subtilis.




  
PubMed:
        2106508


MedLine:
        




    
Source:
J Bacteriol. 1990 Mar;172(3):1306-11.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2106508









           
Homologs By Global Alignment 

           

       



     
Gene ID:643
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1091
                           PA4763_tr
                           translation of PA4763
                           558
                           99.46
                           99.99
                           0
                           2760.0
     

     
     
41472
                           gb|AAG08149.1|AE004890_2
                           (AE004890) DNA repair protein RecN [Pseudomonas aeruginosa PAO1]
                           558
                           99.46
                           99.99
                           0
                           2760.0
     

     
     
41473
                           gb|AAO57955.1|
                           (AE016872) DNA repair protein RecN [Pseudomonas syringae pv. tomato str. DC3000]
                           558
                           79.21
                           86.73
                           1
                           2220.0
     

     
     
41474
                           gb|AAN70301.1|AE016671_2
                           (AE016791) DNA repair protein RecN [Pseudomonas putida KT2440]
                           558
                           76.88
                           85.84
                           1
                           2168.0
     

     
     
41475
                           dbj|BAC58911.1|
                           (AP005075) DNA repair protein RecN [Vibrio parahaemolyticus]
                           558
                           48.38
                           63.97
                           4
                           1291.0
     

     






      

          
GC ORFID: 43645How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4763Glimmer Score: 

          
Start: 4885538Stop: 4887214

          
Length: 1677


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4763 translation of PA4763Homolog Bit Score 1067.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5587 (ORF: BLASTX 861.0), t_PA4763 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGTTCACCTGTCCGTTCACAACTACGCCATCGTCGAGCACTTGGATCTCGAACTCGCTACCGGCATG 
AGCGTGATCACCGGCGAAACCGGCGCGGGCAAGTCGATCATGCTCGACGCCCTCGGCCTTACCCTCGGCGAC 
CGCGCCGACAGCGGCGCGGTACGTCCCGGAGCGGACAAGGCCGACATTCTCGCCAGCTTCGACGTCAGCGCC 
ATCGCCGAGGCCCGCGACTGGCTCGCCGAGCGCGACCTGGAACAGGACGGTCCGTGCATCCTGCGCCGGGTG 
ATCACTGCCGAAGGTCGCTCGCGTGCCTACATCAACGGCACGCCCTGCCCTCTGGGCGACCTGAAGAGCCTG 
GGCGAACTGCTGATCGACATCCATAGCCAGCACGAGCACCAGTCGCTGCTGAAGAGCGAGACCCACCGTCGC 
CTGCTCGACGAGTACGCCGGCTGCCAGGAGCTGGCGCGCCAGGTGCAGCTCGCCGCGCAACGCTGGAAGCAG 
ACCAGCCAGGAACTCGAACGCCTGTCGCGTAGCGGCGACGAACAACGCGCCCGCCACCAGTTGCTCAGCTAC 
CAGCTGGAAGAACTGGAAAACCTGTCCCTCGGCGAAAACGAACTGGAAAGCCTGGAGCAGGAGCAGAAGACC 
CTGAGCAACGCCGAAAGCCTGCTCGCCGCCTGCCGCCAAGTCGTGGAAATGTGCAGCGAGAGCGATGCCGGC 
AACGTCCTTTCCGCGCTCAATGCCAGCCTCAGCCGCCTGACCTCGTTCAGCGGCCAGCCCGCCGCCCTCGGC 
GAAGCGGTCAACCTGTTGTCCAGCGCGCAGATCCAGGTCGAGGAGGCGATCGGCGAACTGAACCGCTTCGTC 
GACCACTTCGATGCCGATCCCAATCGCCAGCAGCAGGTCGAGGAGCGCCTGGACGTCATTTATTCCCTGGCG 
CGCAAGCACCGGGTCCAGCCCGCCGAACTGGCCGACCTGCAGCAGCGCCTGTTCGACGAACTGGAGGCGCTG 
AACGCCGACGACGAAGCGGTCGGACGCCTGGGCGACGAGCTGGCCGCCTACGCCCGGCATTACCAGGAAAAA 
GCCGACGAACTGAGCCGCCTGCGCCAGGCCGCGGCCGCACCTCTTGCCGCCAGCGTGGAACAGGAGATGCAG 
CGCCTGGGCATGCCCGGAGGGCGCtTCGCCATCGTCCTGCATCCCGGCGACAGCGCCGAGCCGCAGGCCAAC 
GGACTGGAAAGCGTGGAGTTCCTGGTCAGCGCCAACCCCGGGCAGCCGTTGAAAGGGCTGGCCAAGGTCGCC 
TCGGGCGGCGAACTGTCGCGGATCAGCCTGGCGATCCAGGTGATCACGGCACAGACCTCGCGCATCCCCACC 
CTGGTCTTCGACGAAGTCGACGTCGGCATCGGAGGCCCCACCGCCGAAGTGGTCGGACAGTTGCTGCGTCGC 
CTCGGCGAACGCGGCCAGGTCCTCACCGTGACCCACTTGCCGCAGGTCGCCGCCCAGGGCCACCAGCACCTG 
TTCGTGCACAAGGAACGCGGCAGCAGCGAAACCCGCACGGCGGTCGCCACCCTGAACAAGGCCCAGCGGATC 
GAGGAGATCGCCCGCATGCTCGGCGGCGTCGACCTGACCAAGGAATCCCTGGCCCACGCGAAGAAACTGGTC 
AACCTGGCCGCCCAGAACTGA