ViewGene
Locus Name:
GeneID:
Location:

GeneID:642
TrivialName: PA14_22350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22350
PAO1 Ortholog Locus:PA3234
Sequence Length:1656
Protein Length:551
Start: 1945934
Stop: 1947589
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06622.1|AE004746_6 (AE004746) probable sodium:solute symporter [Pseudomonas aeruginosa PAO1]
Identities = 551/551 (100%), Positives = 551/551 (100%)
Sequence:
ATGATCGCTCGTCTCCTTGCCGCGCTCGGCCTTGCGGCCTTCGCTCCGGCCCTCTGGGCCGACGCGCTGACC
GGCGACGTGCAGCGCCAGCCGCTGAACGTCTCGGCCATCGTCATGTTCGTCGCCTTCGTCGGCGCGACCCTC
TGCATCACCTACTGGGCATCCAAGCGCAACCGCTCGGCGGCCGACTACTATGCCGCAGGCGGCCGCATCACC
GGCTTCCAGAATGGCCTGGCGATCGCCGGCGACTACATGTCGGCGGCATCCTTCCTGGGTATTTCGGCGCTG
GTCTTCACTTCCGGCTACGACGGCCTGATCTACTCGATCGGCTTCCTGGTCGGCTGGCCGATCATCCTCTTC
CTCATCGCCGAGCGCCTGCGCAACCTGGGCAAGTACACCTTCGCCGACGTCGCCTCCTACCGCCTCAAGCAG
AAGCAGATCCGCACCCTGTCGGCCTGCGGCTCGCTGGTGGTGGTGGCGTTCTACCTGATCGCGCAGATGGTC
GGCGCCGGCAAGCTGATCGAGCTGCTGTTCGGCCTCAACTACCATGTCGCGGTGGTCCTGGTGGGCATCCTG
ATGGTGCTCTACGTGCTGTTCGGCGGCATGCTGGCGACCACCTGGGTGCAGATCATCAAGGCCGTGCTGTTG
CTCTCCGGCGCCTCGTTCATGGCGATCATGGTGCTCAAGCACGTCAACTTCGACGTCAGCACGCTGTTCTCC
GAAGCCATCAAGGTGCATCCGAAGGGCGAGGCGATCATGAGTCCGGGCGGCCTGGTCAAGGATCCGATCTCG
GCATTCTCCCTGGGCTTCGCGCTGATGTTCGGCACCGCCGGGCTGCCGCACATCCTGATGCGCTTCTTCACC
GTCAGTGACGCCAAGGAAGCGCGCAAGAGCGTGTTCTACGCCACCGGTTTCATCGGCTACTTCTACATCCTG
ACCTTCATCATCGGTTTCGGCGCGATCCTGCTGGTCAGCACCAACCCGGACTTCAAGGACGCCACCGGCGCC
CTGATCGGCGGCAACAACATGGCGGCGGTGCACCTGGCCGACGCGGTGGGCGGCAGCCTGTTCCTCGGCTTC
ATCTCGGCGGTGGCCTTCGCCACCATCCTCGCGGTGGTCGCCGGGCTGACCCTGGCCGGGGCCTCGGCCGTC
TCCCATGACCTGTACGCCAGCGTGTTCAAGGGCGGCAAGGCCAACGAGAAGGACGAGCTGCGGGTCTCGAAG
ATGACCACCGTGGCCCTGGGCGTGGTCGCCATCGTGCTCGGCATCCTCTTCGAGAAGCAGAACATCGCCTTC
ATGGTCGGCCTGGCCTTCTCCATCGCCGCCAGCTGCAACTTCCCGGTGCTGCTGCTCTCCATGTACTGGAAG
AAGCTGACCACCCGCGGCGCCATGATCGGCGGCTGGATGGGCCTGATCACCGCGGTGGGCCTGATGGTCCTC
GGCCCGACCATCTGGGTGCAGATCCTCGGCCACGAGAAAGCCATCTACCCGTACGAGTACCCGGCGCTGTTC
TCGATGATCGTCGCCTTCGTCGGTATCTGGTTCTTCTCCATCACCGACAAGTCGGCGGCGGCCGACGAGGAG
CGGGCGCGCTTCTTCCCGCAGTTCATCCGTTCCCAGACCGGCCTGGGCGCCTCTGGCGCGGTGGCCCACTAA
Translation:
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRIT
GFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQ
KQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLL
LSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFT
VSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGF
ISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAF
MVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALF
SMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH*
AnnotationID:651GeneID:642
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:09
Gene Name:
Confidence Code:3
GeneProduct:putative sodium/proline:solute symporter
Cell Localization:()
Synonyms:yjcG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative transmembrane transport protein
Functional Category Confidence Code:5
COGs:pfam00474,COG4147,COG0591
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67363.1|AE016362_7 (AE016780) sodium:solute symporter family protein [Pseudomonas
           putida KT2440]
          Length = 554

 Score =  959 bits (2479), Expect = 0.0
 Identities = 489/549 (89%), Positives = 522/549 (95%), Gaps = 1/549 (0%)

>gb|AAM84097.1|AE013652_6 (AE013652) putative sodium/proline symporter [Yersinia pestis KIM]
          Length = 551

 Score =  892 bits (2304), Expect = 0.0
 Identities = 457/551 (82%), Positives = 489/551 (88%)

>gb|AAC77037.1| (AE000480) putative transport protein [Escherichia coli K12]
          Length = 549

 Score =  859 bits (2219), Expect = 0.0
 Identities = 440/548 (80%), Positives = 480/548 (87%), Gaps = 1/548 (0%)








 
Structural Features:
pfam00474, SSF, Sodium:solute symporter family.
CD-Length = 406 residues, 100.0% aligned
Score =  346 bits (888), Expect = 5e-96
Identities = 156/410 (38%), Positives = 228/410 (55%), Gaps = 7/410 (1%)

COG4147, DhlC, Predicted symporter 
CD-Length = 529 residues, 100.0% aligned
Score =  579 bits (1493), Expect = 4e-166
Identities = 328/533 (61%), Positives = 383/533 (71%), Gaps = 22/533 (4%)

COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism]
CD-Length = 493 residues,  99.8% aligned
Score =  165 bits (420), Expect = 1e-41
Identities = 127/503 (25%), Positives = 223/503 (44%), Gaps = 16/503 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1287




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18429




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32309




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:642_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:642
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1090
                           PA3234_tr
                           translation of PA3234
                           551
                           99.99
                           99.99
                           0
                           2759.0
     

     
     
41421
                           gb|AAG06622.1|AE004746_6
                           (AE004746) probable sodium:solute symporter [Pseudomonas aeruginosa PAO1]
                           551
                           99.99
                           99.99
                           0
                           2759.0
     

     
     
41422
                           gb|AAN67363.1|AE016362_7
                           (AE016780) sodium:solute symporter family protein [Pseudomonas putida KT2440]
                           554
                           88.62
                           94.58
                           3
                           2479.0
     

     
     
41423
                           gb|AAO55144.1|
                           (AE016861) sodium:solute symporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           552
                           88.58
                           94.56
                           1
                           2477.0
     

     
     
41424
                           gb|AAM84097.1|AE013652_6
                           (AE013652) putative sodium/proline symporter [Yersinia pestis KIM]
                           551
                           82.94
                           88.74
                           0
                           2304.0
     

     






      

          
GC ORFID: 43644How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3234Glimmer Score: 

          
Start: 3007997Stop: 3006342

          
Length: 1656


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3234 translation of PA3234Homolog Bit Score 1067.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6391 (ORF: BLASTX 961.0), t_PA3234 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGCTCGTCTCCTTGCCGCGCTCGGCCTTGCGGCCTTCGCTCCGGCCCTCTGGGCCGACGCGCTGACC 
GGCGACGTGCAGCGCCAGCCGCTGAACGTCTCGGCCATCGTCATGTTCGTCGCCTTCGTCGGCGCGACCCTC 
TGCATCACCTACTGGGCATCCAAGCGCAACCGCTCGGCGGCCGACTACTATGCCGCAGGCGGCCGCATCACC 
GGCTTCCAGAATGGCCTGGCGATCGCCGGCGACTACATGTCGGCGGCATCCTTCCTGGGTATTTCGGCGCTG 
GTCTTCACTTCCGGCTACGACGGCCTGATCTACTCGATCGGCTTCCTGGTCGGCTGGCCGATCATCCTCTTC 
CTCATCGCCGAGCGCCTGCGCAACCTGGGCAAGTACACCTTCGCCGACGTCGCCTCCTACCGCCTCAAGCAG 
AAGCAGATCCGCACCCTGTCGGCCTGCGGCTCGCTGGTGGTGGTGGCGTTCTACCTGATCGCGCAGATGGTC 
GGCGCCGGCAAGCTGATCGAGCTGCTGTTCGGCCTCAACTACCATGTCGCGGTGGTCCTGGTGGGCATCCTG 
ATGGTGCTCTACGTGCTGTTCGGCGGCATGCTGGCGACCACCTGGGTGCAGATCATCAAGGCCGTGCTGTTG 
CTCTCCGGCGCCTCGTTCATGGCGATCATGGTGCTCAAGCACGTCAACTTCGACGTCAGCACGCTGTTCTCC 
GAAGCCATCAAGGTGCATCCGAAGGGCGAGGCGATCATGAGTCCGGGCGGCCTGGTCAAGGATCCGATCTCG 
GCATTCTCCCTGGGCTTCGCGCTGATGTTCGGCACCGCCGGGCTGCCGCACATCCTGATGCGCTTCTTCACC 
GTCAGTGACGCCAAGGAAGCGCGCAAGAGCGTGTTCTACGCCACCGGTTTCATCGGCTACTTCTACATCCTG 
ACCTTCATCATCGGTTTCGGCGCGATCCTGCTGGTCAGCACCAACCCGGACTTCAAGGACGCCACCGGCGCC 
CTGATCGGCGGCAACAACATGGCGGCGGTGCACCTGGCCGACGCGGTGGGCGGCAGCCTGTTCCTCGGCTTC 
ATCTCGGCGGTGGCCTTCGCCACCATCCTCGCGGTGGTCGCCGGGCTGACCCTGGCCGGGGCCTCGGCCGTC 
TCCCATGACCTGTACGCCAGCGTGTTCAAGGGCGGCAAGGCCAACGAGAAGGACGAGCTGCGGGTCTCGAAG 
ATGACCACCGTGGCCCTGGGCGTGGTCGCCATCGTGCTCGGCATCCTCTTCGAGAAGCAGAACATCGCCTTC 
ATGGTCGGCCTGGCCTTCTCCATCGCCGCCAGCTGCAACTTCCCGGTGCTGCTGCTCTCCATGTACTGGAAG 
AAGCTGACCACCCGCGGCGCCATGATCGGCGGCTGGATGGGCCTGATCACCGCGGTGGGCCTGATGGTCCTC 
GGCCCGACCATCTGGGTGCAGATCCTCGGCCACGAGAAAGCCATCTACCCGTACGAGTACCCGGCGCTGTTC 
TCGATGATCGTCGCCTTCGTCGGTATCTGGTTCTTCTCCATCACCGACAAGTCGGCGGCGGCCGACGAGGAG 
CGGGCGCGCTTCTTCCCGCAGTTCATCCGTTCCCAGACCGGCCTGGGCGCCTCTGGCGCGGTGGCCCACTAA