ViewGene
Locus Name:
GeneID:
Location:

GeneID:6418
TrivialName: PA14_16290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16290
PAO1 Ortholog Locus:
Sequence Length:426
Protein Length:141
Start: 1391688
Stop: 1392113
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07107.1|AE004791_4 (AE004791) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/141 (98%), Positives = 139/141 (98%)
Sequence:
ATGAATGCCCCCGCTAAGAGCCTGTTGGATATCGATGCCTTTCCCCTGGTCCAGGTCCGCGAGATGCCCCGC
GAGCTGGCCGATGTCGAGCGCTGGTTGGAGGAGGTCGAAGCGCTGCTGGCCGTCGAGTGCGATTTCGCCCTG
GTCTATCCGCCACTCCCGCAGGAAGAAGCTGAAGGCGACCAGCAAGCGCGCAAGCGCCTGGTGTTATGGCTC
AAGGAAAATCGCCAGCGCTTCGTCGAGCATTGCCGGGGCATCCTGCTCAGTGCCAACGGCCAGCCGGACAAC
CTCGCCGACCTGCAGCAGCTGGCGCCGGTGCTGCAGGCTGTCTACGGCCCGCCGGTGAGCGTGGCGCCGGAC
CTGGCGTCCGCCCGCGGCATGGCGAAGGCGCTGCTGAGCGGGCCGGCGACGGGGATGAACTGGTGA
Translation:
MNAPAKSLLDIDAFPLVQVREMPRELADVERWLEEVEALLAVECDFALVYPPLPQEEAEGDQQARKRLVLWL
KENRQRFVEHCRGILLSANGQPDNLADLQQLAPVLQAVYGPPVSVAPDLASARGMAKALLSGPATGMNW*
AnnotationID:6419GeneID:6418
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 15:03:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84319518|ref|ZP_00967913.1|  hypothetical protein PaerC_01002735 [Pseudomonas aeruginosa C3719]
Length=141

 Score =  279 bits (714),  Expect = 2e-74
 Identities = 140/141 (99%), Positives = 140/141 (99%), Gaps = 0/141 (0%)

gi|9949886|gb|AAG07107.1|  hypothetical protein PA3720 [Pseudomonas aeruginosa PAO1]
 gi|15598915|ref|NP_252409.1|  hypothetical protein PA3720 [Pseudomonas aeruginosa PAO1]
Length=195

 Score =  277 bits (708),  Expect = 9e-74
 Identities = 139/141 (98%), Positives = 139/141 (98%), Gaps = 0/141 (0%)

gi|84325444|ref|ZP_00973479.1|  hypothetical protein Paer2_01003189 [Pseudomonas aeruginosa 2192]
Length=141

 Score =  277 bits (708),  Expect = 9e-74
 Identities = 139/141 (98%), Positives = 139/141 (98%), Gaps = 0/141 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Confirmed frameshifts results in truncation of first 54 aa of PAO1 PA3720.
Length is consistent with predicted ORFs in strains C3719 and 2192.


















    ReferenceID:12649




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29942




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6418
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7983
                           PA3720_tr
                           translation of PA3720
                           195
                           71.28
                           71.28
                           54
                           708.0
     

     
     
199172
                           gb|AAG07107.1|AE004791_4
                           (AE004791) hypothetical protein PA3720 [Pseudomonas aeruginosa PAO1]
                           195
                           71.28
                           71.28
                           54
                           708.0
     

     






      

          
GC ORFID: 49420How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3562249Stop: 3561824

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3720 translation of PA3720Homolog Bit Score 277.0

          
Other Homologs:  t_PA3720 translation of PA3720 (BLASTP 277)

          
GC ORF Sequence

           
ATGAATGCCCCCGCTAAGAGCCTGTTGGATATCGATGCCTTTCCCCTGGTCCAGGTCCGCGAGATGCCCCGC 
GAGCTGGCCGATGTCGAGCGCTGGTTGGAGGAGGTCGAAGCGCTGCTGGCCGTCGAGTGCGATTTCGCCCTG 
GTCTATCCGCCACTCCCGCAGGAAGAAGCTGAAGGCGACCAGCAAGCGCGCAAGCGCCTGGTGTTATGGCTC 
AAGGAAAATCGCCAGCGCTTCGTCGAGCATTGCCGGGGCATCCTGCTCAGTGCCAACGGCCAGCCGGACAAC 
CTCGCCGACCTGCAGCAGCTGGCGCCGGTGCTGCAGGCTGTCTACGGCCCGCCGGTGAGCGTGGCGCCGGAC 
CTGGCGTCCGCCCGCGGCATGGCGAAGGCGCTGCTGAGCGGGCCGGCGACGGGGATGAACTGGTGA