ViewGene
Locus Name:
GeneID:
Location:

GeneID:641
TrivialName: PA14_67090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67090
PAO1 Ortholog Locus:PA5078
Sequence Length:1578
Protein Length:525
Start: 5989809
Stop: 5988232
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08463.1|AE004920_13 (AE004920) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 525/525 (100%), Positives = 525/525 (100%)
Sequence:
GTGATTTTCCGTTCCGTTTCAAACACCGATTTCCGCGCCCGCGTGCGCACCCTGCTGCTTGCCGGCTCGACC
GCGCTGGCATTCGTCGCCGCCCCGGTATGGGCGTTCAGCATCGACGACGTGGCGAGCAAGGCCAAGGACCTG
GCCGGCGACAAGTATTCCGCGCCGACCAGCAACCTGCCATCGGAATTCAGCGAAATGAAATTCGCCGATTAC
CAGCAGATCCGTTTTATCAACGAGCGCGCCTACTGGGGCAAGCTGAAGACGCCGTTCAAGCTGAGCTTCTAT
CACCAGGGCATGCACTTCGACACGCCGGTGAAGATCAACGAGGTGACCGCTACCACGGTCAAGCCGATCAAG
TACGATCGCACCAAATTCGATTTCGGATCCCTGAAGTTCGACGAGAATGCCACCAAGGATCTCGGCTATGCC
GGTTTCCGCGTGCTCTATCCGATCAACAAGGCCGACAAGCAGGACGAGATCGCCACCTTCCTTGGCGCGAGC
TACTTCCGCGTGGTCGGCAAGGGCCAGGTCTACGGTCTGTCGGCGCGCGGCCTGGCGATCGATACCGCGCTG
CCTTCGGGCGAAGAGTTCCCGCGCTTCCGCGAATTCTGGATCGAGCGGCCGAAGGCGCAGGACAAGCAACTG
GTGATCTACGCCCTGCTCGACTCGCCGCGGGCCACCGGCGCCTACCGCTTCGTGCTGCGTCCGGGCAAGGAT
GCGGTGATGGATGTCCAAGCCCGCGTGTTCCTCCGCGACAAGGTCAGCAAACTGGGCCTGGCGCCGCTGACC
AGCATGTACCTGTTCGGCTCCAACCAGCCGTCCGAGCAGCACAACTTCCGGCCCGAGCTGCATGACTCTAGC
GGTCTGCAGATCCATGCCGGCAACGGCGAGTGGCTGTGGCGTCCGCTGAACAATCCGAAGCACCTGTCGGTG
AGCACCTTCAGCGTGGAGAACCCGAAAGGCTTCGGCCTGCTCCAGCGCGGCCGCGAGTTCTCCCGCTACGAA
GACCTGGACGACCGCTACGACCTGCGTCCGAGCGCCTGGATCGAGCCGAAGGGCGACTGGGGCAAGGGCACC
GTGGAACTGGTGGAAATCCCGACCCCGGACGAAACCAACGACAATATCGTCGCGTTCTGGAACCCCGAGACC
CAGCCTGAGGTCGGAAAGCCGCTGGACTTCGCCTACCGCCTGCACTGGACCATGGATGAAGACGAGCTGCAC
GACCCGAAATCCTCCTGGGTCAAGCAGACCATGCGCTCGGTCGGCGACGTGAAGCAGAAGAACCTGATCCGC
CAGCAGGACGGCAGCACCGCCCTGGTCGTCGACTTCGAAGGGCCGGCCCTGAAGGACCTGGCGCCGGACGCG
CCGGTGACCACCCAGGTCAGCACCGACAGCAACGCCGAGGTGGTGGAGAACAGCCTGCGTTACAACCCGGTC
CTGAAAGGCTGGCGCCTGACGCTGCGGATCAAGGTCAAGGATCCGAAGAAGCCGGTGGAAATGCGCGCGGCG
CTGGTCGACGAGGCGCAGAAGCCACTGAGCGAAACCTGGAGCTATCAGCTGCCTGCCGATGAATAA
Translation:
MIFRSVSNTDFRARVRTLLLAGSTALAFVAAPVWAFSIDDVASKAKDLAGDKYSAPTSNLPSEFSEMKFADY
QQIRFINERAYWGKLKTPFKLSFYHQGMHFDTPVKINEVTATTVKPIKYDRTKFDFGSLKFDENATKDLGYA
GFRVLYPINKADKQDEIATFLGASYFRVVGKGQVYGLSARGLAIDTALPSGEEFPRFREFWIERPKAQDKQL
VIYALLDSPRATGAYRFVLRPGKDAVMDVQARVFLRDKVSKLGLAPLTSMYLFGSNQPSEQHNFRPELHDSS
GLQIHAGNGEWLWRPLNNPKHLSVSTFSVENPKGFGLLQRGREFSRYEDLDDRYDLRPSAWIEPKGDWGKGT
VELVEIPTPDETNDNIVAFWNPETQPEVGKPLDFAYRLHWTMDEDELHDPKSSWVKQTMRSVGDVKQKNLIR
QQDGSTALVVDFEGPALKDLAPDAPVTTQVSTDSNAEVVENSLRYNPVLKGWRLTLRIKVKDPKKPVEMRAA
LVDEAQKPLSETWSYQLPADE*
AnnotationID:650GeneID:641
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:23
Gene Name:
Confidence Code:3
GeneProduct:periplasmic glucan biosynthesis protein, MdoG
Cell Localization:()
Synonyms:mdoG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04349
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70591.1|AE016701_11 (AE016792) periplasmic glucan biosynthesis protein [Pseudomonas
           putida KT2440]
          Length = 559

 Score =  749 bits (1935), Expect = 0.0
 Identities = 370/548 (67%), Positives = 414/548 (75%), Gaps = 52/548 (9%)

>gb|AAL20080.1| (AE008750) periplasmic glucans biosynthesis protein [Salmonella
           typhimurium LT2]
          Length = 511

 Score =  748 bits (1932), Expect = 0.0
 Identities = 357/506 (70%), Positives = 418/506 (82%), Gaps = 1/506 (0%)

>dbj|BAB34849.1| (AP002555) periplasmic glucans biosynthesis protein [Escherichia
           coli O157:H7]
          Length = 511

 Score =  744 bits (1922), Expect = 0.0
 Identities = 351/506 (69%), Positives = 418/506 (82%), Gaps = 1/506 (0%)






 
Structural Features:
pfam04349, MdoG, Periplasmic glucan biosynthesis protein, MdoG
CD-Length = 484 residues, 100.0% aligned
Score =  803 bits (2075), Expect = 0.0
Identities = 348/489 (71%), Positives = 385/489 (78%), Gaps = 6/489 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18427




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34992




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:641_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:641
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1089
                           PA5078_tr
                           translation of PA5078
                           525
                           99.99
                           99.99
                           0
                           2762.0
     

     
     
41397
                           gb|AAG08463.1|AE004920_13
                           (AE004920) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           525
                           99.80
                           99.99
                           0
                           2759.0
     

     
     
41398
                           emb|CAC13110.1|
                           (AJ294718) OpgG protein [Erwinia chrysanthemi]
                           528
                           68.93
                           79.54
                           9
                           1941.0
     

     
     
41402
                           emb|CAD08274.1|
                           (AL627269) periplasmic glucans biosynthesis protein MdoG precursor [Salmonella enterica subsp. enterica serovar Typhi]
                           525
                           68.00
                           80.00
                           14
                           1931.0
     

     
     
41401
                           gb|AAO69393.1|
                           (AE016840) periplasmic glucans biosynthesis protein MdoG precursor [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           525
                           68.00
                           80.00
                           14
                           1931.0
     

     






      

          
GC ORFID: 43643How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5078Glimmer Score: 

          
Start: 5253494Stop: 5251917

          
Length: 1578


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5078 translation of PA5078Homolog Bit Score 1068.0

          
Other Homologs:  t_PA5078 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATTTTCCGTTCCGTTTCAAACACCGATTTCCGCGCCCGCGTGCGCACCCTGCTGCTTGCCGGCTCGACC 
GCGCTGGCATTCGTCGCCGCCCCGGTATGGGCGTTCAGCATCGACGACGTGGCGAGCAAGGCCAAGGACCTG 
GCCGGCGACAAGTATTCCGCGCCGACCAGCAACCTGCCATCGGAATTCAGCGAAATGAAATTCGCCGATTAC 
CAGCAGATCCGTTTTATCAACGAGCGCGCCTACTGGGGCAAGCTGAAGACGCCGTTCAAGCTGAGCTTCTAT 
CACCAGGGCATGCACTTCGACACGCCGGTGAAGATCAACGAGGTGACCGCTACCACGGTCAAGCCGATCAAG 
TACGATCGCACCAAATTCGATTTCGGATCCCTGAAGTTCGACGAGAATGCCACCAAGGATCTCGGCTATGCC 
GGTTTCCGCGTGCTCTATCCGATCAACAAGGCCGACAAGCAGGACGAGATCGCCACCTTCCTTGGCGCGAGC 
TACTTCCGCGTGGTCGGCAAGGGCCAGGTCTACGGTCTGTCGGCGCGCGGCCTGGCGATCGATACCGCGCTG 
CCTTCGGGCGAAGAGTTCCCGCGCTTCCGCGAATTCTGGATCGAGCGGCCGAAGGCGCAGGACAAGCAACTG 
GTGATCTACGCCCTGCTCGACTCGCCGCGGGCCACCGGCGCCTACCGCTTCGTGCTGCGTCCGGGCAAGGAT 
GCGGTGATGGATGTCCAAGCCCGCGTGTTCCTCCGCGACAAGGTCAGCAAACTGGGCCTGGCGCCGCTGACC 
AGCATGTACCTGTTCGGCTCCAACCAGCCGTCCGAGCAGCACAACTTCCGGCCCGAGCTGCATGACTCTAGC 
GGTCTGCAGATCCATGCCGGCAACGGCGAGTGGCTGTGGCGTCCGCTGAACAATCCGAAGCACCTGTCGGTG 
AGCACCTTCAGCGTGGAGAACCCGAAAGGCTTCGGCCTGCTCCAGCGCGGCCGCGAGTTCTCCCGCTACGAA 
GACCTGGACGACCGCTACGACCTGCGTCCGAGCGCCTGGATCGAGCCGAAGGGCGACTGGGGCAAGGGCACC 
GTGGAACTGGTGGAAATCCCGACCCCGGACGAAACCAACGACAATATCGTCGCGTTCTGGAACCCCGAGACC 
CAGCCTGAGGTCGGAAAGCCGCTGGACTTCGCCTACCGCCTGCACTGGACCATGGATGAAGACGAGCTGCAC 
GACCCGAAATCCTCCTGGGTCAAGCAGACCATGCGCTCGGTCGGCGACGTGAAGCAGAAGAACCTGATCCGC 
CAGCAGGACGGCAGCACCGCCCTGGTCGTCGACTTCGAAGGGCCGGCCCTGAAGGACCTGGCGCCGGACGCG 
CCGGTGACCACCCAGGTCAGCACCGACAGCAACGCCGAGGTGGTGGAGAACAGCCTGCGTTACAACCCGGTC 
CTGAAAGGCTGGCGCCTGACGCTGCGGATCAAGGTCAAGGATCCGAAGAAGCCGGTGGAAATGCGCGCGGCG 
CTGGTCGACGAGGCGCAGAAGCCACTGAGCGAAACCTGGAGCTATCAGCTGCCTGCCGATGAATAA