ViewGene
Locus Name:
GeneID:
Location:

GeneID:640
TrivialName: PA14_02340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02340
PAO1 Ortholog Locus:PA0185
Sequence Length:1617
Protein Length:538
Start: 210934
Stop: 209318
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03575.1|AE004456_6 (AE004456) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 536/538 (99%), Positives = 537/538 (99%)
Sequence:
ATGAAGAATATCGATAAAACCCTTTCGCCCGCCTGGAGCCGGCCCCTGCCGCGCCTGGCGCCGCCGCCCTCC
GCGGCTTTCGCCCGGCGCCTGGGGGACAGCCTGCTGCCCTGGTTGCTGCCCCTCGGGCTGGCGCTGCTGTGG
TGGGTCGCCAGCCATCGCCACTGGATGTCGGCCCAGGTGCTGCCGACTCCCGAGCTGGTCTGGCAGAGCGCC
CGCGAGTTGCTCGCCGGCGAACTCTGGAGCGAATTGGCGATCAGCCTGCGGCGCCTGGCCTGGGGCCTGCTC
GCCGGGGTCGCCAGCGGCGCCGCGCTAGGCGCCTGGCTGGGCTTCAGTCCGCGTGCCGAGCGCCTGGTCTTC
CCCACCTTCAGCGCCCTCGCGCAGATCCCCACGCTGGCCTGGATCCCGCTGTTCATGCTGTTCTTCGGCATC
GGCGAACTGCTCAAGCTGGTGGTGCTGGTGAAAGCGGTCGTGGTGCCGGTGACCATCCATACCCTGGTCGGC
GTGCGCGACGCCCAGCCCAAGCTGCGCGAAGCCGCCGCGGTGCTGCGCCTGCCGCCACGCCTGCTGGTCTGG
CGGCTGATCCTGCCGGCGGCGCTGCCGGCCTTCCTCACCGGGCTGCGCCTGGCCCTGGCGCAGGGTTGGACC
TCGCTGCTGGCGGTCGAGCTGCTGGCTTCCAGCGAGGGCATCGGCTACCTGATGGTGCAGGGCCGGCAACTG
TTCATGCTCGACATCGTGTTCGTCTGCATCCTCGTCATCGGCCTGGTCGGGGTGGGCATGGACCGCGCCATC
CAGTGGCTCGACCGCCGCCTGCTGCACTGGCCGCAAGCCGCCACCGGCGAATTCCGCCGGCGCCCGCCGGGA
CGCGGCTGGCAGCGCCTGCAGGTCTGGCTGCCGCCGCTGGCGCTGCTGCTCCTGTGGCAGTCGGCGAGCAGC
GCCGAATGGGTCGATCCGGCGATCCTCGCCAGCCCTCTGGAAGTGGCGCGGGCGACCTGGAGCGGAGCGCTC
GACGGCAGCCTGCCGGGCGCCCTGTTCGACAGCCTGAAGCGCACGCTCGGCGGCCTCCTGCTGGGCGGCGGC
CTGGGTTTCCTCGGCGGCCTGCTGCTCGGCCTGTGGCGCCCGGCGGAACGCTTCTTCGGCCCCACTTTCGCG
GCACTGCGGCAGGTGGCGATCTTCGCCTGGGTGCCGCTGCTCACCGCCTGGTTCGGCCTGGGCGAACCGGCC
AAGCTGACGTTCGTCGCAATCGCCGCCTTCTTCCCGCTGCTGCTGGCCACCCAGCGCGGCATCGCCAGCCTG
CCGCCGAGCCTCGGCGAGGCGGCCCGGGTGCTGCGCCTGGGTCCCTGGCGACGGCTGCTCCGGCTGGTCCTG
CCGGGTGCCGCCCCGTCGGTGTTCGCCGGCCTGCGCCTGGCGCTGATCTACGCCTGGCTGGGAACCATCGGC
GCCGAGTACTTCATGCCCTCCGACGGCGGCATCGGCAGCCTGATGATCGGCGCCCAGCAACTGTTCCGCATG
GACCTGATCGGTGCCGGCATGCTCCTGGTCGGCCTCACCGGCGCCCTGCTCAATGCTCTCGGCCAACGCATC
GAAGCGCGCGCCACGCGCTGGAGACACGCATGA
Translation:
MKNIDKTLSPAWSRPLPRLAPPPSAAFARRLGDSLLPWLLPLGLALLWWVASHRHWMSAQVLPTPELVWQSA
RELLAGELWSELAISLRRLAWGLLAGVASGAALGAWLGFSPRAERLVFPTFSALAQIPTLAWIPLFMLFFGI
GELLKLVVLVKAVVVPVTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWT
SLLAVELLASSEGIGYLMVQGRQLFMLDIVFVCILVIGLVGVGMDRAIQWLDRRLLHWPQAATGEFRRRPPG
RGWQRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLKRTLGGLLLGGG
LGFLGGLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASL
PPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMPSDGGIGSLMIGAQQLFRM
DLIGAGMLLVGLTGALLNALGQRIEARATRWRHA*
AnnotationID:649GeneID:640
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 17:05:34
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA0185, atsB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0600
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD31786.2|AF126201_4 (AF126201) AtsB [Pseudomonas putida]
          Length = 535

 Score =  726 bits (1873), Expect = 0.0
 Identities = 381/535 (71%), Positives = 427/535 (79%), Gaps = 6/535 (1%)








 
Structural Features:
COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, 
permease component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  99.6% aligned
Score =  187 bits (477), Expect = 2e-48
Identities = 105/257 (40%), Positives = 141/257 (54%), Gaps = 1/257 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1283




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18425




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33553




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:640_cdd.html


    		




 
URL:

















    ReferenceID:35484




  
Author/Investigator(s):
        Hummerjohann J, Laudenbach S, Retey J, Leisinger T, Kertesz MA.





  
Title:
         
The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon.




  
PubMed:
        10715018


MedLine:
        




    
Source:
J Bacteriol. 2000 Apr;182(7):2055-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10715018









           
Homologs By Global Alignment 

           

       



     
Gene ID:640
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1087
                           PA0185_tr
                           translation of PA0185
                           538
                           99.62
                           99.81
                           0
                           2764.0
     

     
     
41391
                           gb|AAG03575.1|AE004456_6
                           (AE004456) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           538
                           99.62
                           99.81
                           0
                           2764.0
     

     
     
41392
                           emb|CAA88423.1|
                           (Z48540) ABC-type transporter, putative membrane subunit [Pseudomonas aeruginosa]
                           551
                           87.47
                           88.38
                           27
                           2396.0
     

     
     
41393
                           gb|AAD31786.2|AF126201_4
                           (AF126201) AtsB [Pseudomonas putida]
                           541
                           70.42
                           79.29
                           9
                           1879.0
     

     
     
41394
                           emb|CAE26806.1|
                           (BX572597) sulfate ester transport system permease protein [Rhodopseudomonas palustris CGA009]
                           558
                           55.01
                           66.48
                           40
                           1484.0
     

     






      

          
GC ORFID: 43642How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0185Glimmer Score: 

          
Start: 6012273Stop: 6010657

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0185 translation of PA0185Homolog Bit Score 1069.0

          
Other Homologs:  t_PA0185 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAATATCGATAAAACCCTTTCGCCCGCCTGGAGCCGGCCCCTGCCGCGCCTGGCGCCGCCGCCCTCC 
GCGGCTTTCGCCCGGCGCCTGGGGGACAGCCTGCTGCCCTGGTTGCTGCCCCTCGGGCTGGCGCTGCTGTGG 
TGGGTCGCCAGCCATCGCCACTGGATGTCGGCCCAGGTGCTGCCGACTCCCGAGCTGGTCTGGCAGAGCGCC 
CGCGAGTTGCTCGCCGGCGAACTCTGGAGCGAATTGGCGATCAGCCTGCGGCGCCTGGCCTGGGGCCTGCTC 
GCCGGGGTCGCCAGCGGCGCCGCGCTAGGCGCCTGGCTGGGCTTCAGTCCGCGTGCCGAGCGCCTGGTCTTC 
CCCACCTTCAGCGCCCTCGCGCAGATCCCCACGCTGGCCTGGATCCCGCTGTTCATGCTGTTCTTCGGCATC 
GGCGAACTGCTCAAGCTGGTGGTGCTGGTGAAAGCGGTCGTGGTGCCGGTGACCATCCATACCCTGGTCGGC 
GTGCGCGACGCCCAGCCCAAGCTGCGCGAAGCCGCCGCGGTGCTGCGCCTGCCGCCACGCCTGCTGGTCTGG 
CGGCTGATCCTGCCGGCGGCGCTGCCGGCCTTCCTCACCGGGCTGCGCCTGGCCCTGGCGCAGGGTTGGACC 
TCGCTGCTGGCGGTCGAGCTGCTGGCTTCCAGCGAGGGCATCGGCTACCTGATGGTGCAGGGCCGGCAACTG 
TTCATGCTCGACATCGTGTTCGTCTGCATCCTCGTCATCGGCCTGGTCGGGGTGGGCATGGACCGCGCCATC 
CAGTGGCTCGACCGCCGCCTGCTGCACTGGCCGCAAGCCGCCACCGGCGAATTCCGCCGGCGCCCGCCGGGA 
CGCGGCTGGCAGCGCCTGCAGGTCTGGCTGCCGCCGCTGGCGCTGCTGCTCCTGTGGCAGTCGGCGAGCAGC 
GCCGAATGGGTCGATCCGGCGATCCTCGCCAGCCCTCTGGAAGTGGCGCGGGCGACCTGGAGCGGAGCGCTC 
GACGGCAGCCTGCCGGGCGCCCTGTTCGACAGCCTGAAGCGCACGCTCGGCGGCCTCCTGCTGGGCGGCGGC 
CTGGGTTTCCTCGGCGGCCTGCTGCTCGGCCTGTGGCGCCCGGCGGAACGCTTCTTCGGCCCCACTTTCGCG 
GCACTGCGGCAGGTGGCGATCTTCGCCTGGGTGCCGCTGCTCACCGCCTGGTTCGGCCTGGGCGAACCGGCC 
AAGCTGACGTTCGTCGCAATCGCCGCCTTCTTCCCGCTGCTGCTGGCCACCCAGCGCGGCATCGCCAGCCTG 
CCGCCGAGCCTCGGCGAGGCGGCCCGGGTGCTGCGCCTGGGTCCCTGGCGACGGCTGCTCCGGCTGGTCCTG 
CCGGGTGCCGCCCCGTCGGTGTTCGCCGGCCTGCGCCTGGCGCTGATCTACGCCTGGCTGGGAACCATCGGC 
GCCGAGTACTTCATGCCCTCCGACGGCGGCATCGGCAGCCTGATGATCGGCGCCCAGCAACTGTTCCGCATG 
GACCTGATCGGTGCCGGCATGCTCCTGGTCGGCCTCACCGGCGCCCTGCTCAATGCTCTCGGCCAACGCATC 
GAAGCGCGCGCCACGCGCTGGAGACACGCATGA