ViewGene
Locus Name:
GeneID:
Location:

GeneID:6385
TrivialName: PA14_18070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18070
PAO1 Ortholog Locus:
Sequence Length:198
Protein Length:65
Start: 1550805
Stop: 1551002
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN66215.1|AE016249_7 (AE016776) copper-binding protein, putative [Pseudomonas putida KT2440]
Identities = 43/65 (66%), Positives = 51/65 (78%)
Sequence:
ATGCAAGTCTTCAAGGTTCAGGGCATGACCTGCGGCCACTGCGTACGGGCGATCACCCATGCGGTGCAGGCG
AAGGATTCAGCGGCGGACGTCCAAGTGGATCTTGGCGCCGGCGAAGTCCGGGTCGCCAGCCGGCTCGACAGC
GCCCAGGTACTCGAGGCGATCCGCGAGGAGGGCTACGGCGCCGAGCTGGCCTGA
Translation:
MQVFKVQGMTCGHCVRAITHAVQAKDSAADVQVDLGAGEVRVASRLDSAQVLEAIREEGYGAELA*
AnnotationID:6386GeneID:6385
AnnotatorUID: diggins
Modification Date/Time: 2005-07-05 06:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic metal-binding protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2608,cd00371
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM88666.1|AF390440_2 (AF390440) periplasmic metal-binding protein [Pseudomonas putida]
          Length = 65

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 43/64 (67%), Positives = 49/64 (76%)






 
Structural Features:
COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism] 
CD-Length = 71 residues,  95.8% aligned
Score = 48.1 bits (114), Expect = 4e-07
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain 
of approximately 30 amino acid residues found in a number of proteins that 
transport or detoxify heavy metals
CD-Length = 63 residues, 100.0% aligned
Score = 46.7 bits (111), Expect = 1e-06
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:12588




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31966




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:6385_cdd.html


    		




 
URL:









      

          
GC ORFID: 49387How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3403131Stop: 3402934

          
Length: 198


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAAGTCTTCAAGGTTCAGGGCATGACCTGCGGCCACTGCGTACGGGCGATCACCCATGCGGTGCAGGCG 
AAGGATTCAGCGGCGGACGTCCAAGTGGATCTTGGCGCCGGCGAAGTCCGGGTCGCCAGCCGGCTCGACAGC 
GCCCAGGTACTCGAGGCGATCCGCGAGGAGGGCTACGGCGCCGAGCTGGCCTGA