ViewGene
Locus Name:
GeneID:
Location:

GeneID:638
TrivialName: PA14_38460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38460
PAO1 Ortholog Locus:PA2014
Sequence Length:1608
Protein Length:535
Start: 3429132
Stop: 3430739
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05402.1|AE004627_10 (AE004627) probable acyl-CoA carboxyltransferase beta chain [Pseudomonas aeruginosa PAO1]
Identities = 535/535 (100%), Positives = 535/535 (100%)
Sequence:
ATGGCCATCCTGCACACCCAGATCAATCCACGCTCCGCCGAGTTCGCGGCCAACGCCGCGACCATGCTGGAA
CAGGTCAACGCCCTGCGCACCCTCCTCGGCCGCATCCACGAAGGCGGCGGTAGCGCCGCCCAGGCCCGGCAC
AGCGCGCGCGGCAAGCTGCTGGTGCGCGAACGCATCAACCGCCTGCTCGACCCCGGCTCGCCGTTCCTCGAG
CTTTCCGCCCTCGCCGCCCATGAGGTCTACGGCGAAGAGGTCGCCGCCGCCGGCATCGTCGCCGGGATCGGC
CGGGTCGAAGGGGTGGAATGCATGATCGTCGGCAACGATGCCACGGTGAAGGGCGGCACCTACTATCCGCTG
ACTGTGAAGAAGCACCTGCGGGCCCAGGCCATCGCCCTGGAAAACCGCCTGCCATGCATCTACCTGGTGGAC
TCCGGCGGCGCCAACCTGCCGCGCCAGGACGAGGTGTTCCCCGACCGCGAGCACTTCGGCCGGATCTTCTTC
AACCAGGCCAACATGAGTGCCCGCGGCATCCCGCAGATCGCCGTGGTCATGGGCTCCTGCACCGCCGGCGGG
GCCTACGTGCCGGCGATGTCCGACGAAACCGTGATGGTGCGCGAACAGGCCACCATCTTCCTCGCCGGGCCG
CCGCTGGTGAAGGCCGCTACCGGCGAGGTGGTCAGCGCCGAGGAACTTGGCGGCGCCGACGTGCACTGCAAG
GTCTCCGGGGTCGCCGACCACTATGCCGAGGACGATGACCATGCCCTGGCCATCGCCCGCCGCTGCGTCGCC
AACCTCAACTGGCGCAAGCAGGGCCAGCTGCAATGCCGTGCGCCGCGCGCACCGCTGTACCCCGCCGAGGAG
CTGTACGGGGTGATTCCCGCCGACAGCAAGCAGCCCTACGACGTGCGCGAAGTGATCGCACGGCTGGTGGAC
GGCTCCGAGTTCGACGAGTTCAAGGCGCTGTTCGGCACCACCCTGGTCTGCGGCTTCGCCCACCTGCACGGC
TATCCGATAGCCATCCTGGCCAACAACGGGATCCTCTTCGCCGAGGCCGCGCAGAAAGGCGCGCACTTCATC
GAACTGGCCTGCCAGCGCGGCATCCCGCTGCTGTTCCTGCAGAACATCACCGGTTTCATGGTCGGCCAGAAG
TACGAGGCCGGTGGCATCGCCAAGCACGGCGCCAAGCTGGTGACCGCGGTGGCCTGCGCGCGGGTGCCGAAG
TTCACCGTGCTGATCGGCGGCAGCTTCGGCGCCGGCAACTACGGCATGTGCGGACGCGCCTACGACCCGCGC
TTCCTGTGGATGTGGCCGAACGCGAGGATCGGCGTGATGGGCGGCGAACAGGCCGCCGGGGTGCTCGCCCAG
GTCAAGCGCGAGCAGGCCGAGCGCGCCGGCCAGCAGCTCGGCGTCGAAGAGGAGGCGAAGATCAAGGCACCG
ATCCTCGAGCAGTACGAGCACCAGGGCCATCCCTACTACTCCAGCGCGCGACTGTGGGACGACGGCGTGATC
GATCCGGCGCAGACCCGCGAGGTGCTCGCCCTGGCGCTTTCCGCCGCCCTCAACGCCCCCATCGAGCCGACC
GCCTTCGGCGTGTTCCGCATGTGA
Translation:
MAILHTQINPRSAEFAANAATMLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLVRERINRLLDPGSPFLE
LSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVD
SGGANLPRQDEVFPDREHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGP
PLVKAATGEVVSAEELGGADVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQGQLQCRAPRAPLYPAEE
LYGVIPADSKQPYDVREVIARLVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILANNGILFAEAAQKGAHFI
ELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPR
FLWMWPNARIGVMGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVI
DPAQTREVLALALSAALNAPIEPTAFGVFRM*
AnnotationID:647GeneID:638
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 13:01:09
Gene Name:gnyB
Confidence Code:1
GeneProduct:acyl-CoA carboxyltransferase beta chain
Cell Localization:(4) Inner membrane protein
Synonyms:accD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4799,pfam01039
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Acyclic isoprenoid catabolism
Homology:
>gb|AAN69655.1|AE016600_5 (AE016789) 3-methylcrotonyl-CoA carboxylase, beta subunit, putative
           [Pseudomonas putida KT2440]
          Length = 535

 Score =  939 bits (2428), Expect = 0.0
 Identities = 458/535 (85%), Positives = 498/535 (93%)

>gb|AAM35156.1| (AE011651) acyl-CoA carboxyltransferase beta chain [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 536

 Score =  773 bits (1997), Expect = 0.0
 Identities = 384/536 (71%), Positives = 439/536 (81%), Gaps = 1/536 (0%)

>emb|CAE44778.1| (BX640412) carboxyltransferase subunit of acetyl-CoA carboxylase
           [Bordetella pertussis]
          Length = 537

 Score =  759 bits (1960), Expect = 0.0
 Identities = 374/535 (69%), Positives = 434/535 (81%)
Structural Features:
COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component 
(subunits alpha and beta) [Lipid metabolism]
CD-Length = 526 residues, 100.0% aligned
Score =  649 bits (1676), Expect = 0.0
Identities = 246/536 (45%), Positives = 312/536 (58%), Gaps = 22/536 (4%)

pfam01039, Carboxyl_trans, Carboxyl transferase domain
CD-Length = 502 residues,  98.4% aligned
Score =  507 bits (1307), Expect = 2e-144
Identities = 197/505 (39%), Positives = 268/505 (53%), Gaps = 21/505 (4%)
Genomic Context:






   
Comment:


















    ReferenceID:1279




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18421




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32711




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:638_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:638
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1084
                           PA2014_tr
                           translation of PA2014
                           535
                           99.99
                           99.99
                           0
                           2766.0
     

     
     
41263
                           gb|AAG05402.1|AE004627_10
                           (AE004627) probable acyl-CoA carboxyltransferase beta chain [Pseudomonas aeruginosa PAO1]
                           535
                           99.99
                           99.99
                           0
                           2766.0
     

     
     
41264
                           gb|AAN69655.1|AE016600_5
                           (AE016789) 3-methylcrotonyl-CoA carboxylase, beta subunit, putative [Pseudomonas putida KT2440]
                           535
                           85.60
                           93.08
                           0
                           2428.0
     

     
     
41265
                           gb|AAO56239.1|
                           (AE016865) carboxyl transferase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           535
                           84.48
                           92.14
                           0
                           2410.0
     

     
     
41266
                           gb|AAQ59438.1|
                           (AE016916) probable propionyl-CoA carboxylase (beta subunit) [Chromobacterium violaceum ATCC 12472]
                           535
                           73.83
                           85.42
                           3
                           2086.0
     

     






      

          
GC ORFID: 43640How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2014Glimmer Score: 

          
Start: 1524779Stop: 1523172

          
Length: 1608


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2014 translation of PA2014Homolog Bit Score 1070.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8071 (ORF: BLASTX 929.0), t_PA2888 (ORF: BLASTX 471.0), t_PA2014 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATCCTGCACACCCAGATCAATCCACGCTCCGCCGAGTTCGCGGCCAACGCCGCGACCATGCTGGAA 
CAGGTCAACGCCCTGCGCACCCTCCTCGGCCGCATCCACGAAGGCGGCGGTAGCGCCGCCCAGGCCCGGCAC 
AGCGCGCGCGGCAAGCTGCTGGTGCGCGAACGCATCAACCGCCTGCTCGACCCCGGCTCGCCGTTCCTCGAG 
CTTTCCGCCCTCGCCGCCCATGAGGTCTACGGCGAAGAGGTCGCCGCCGCCGGCATCGTCGCCGGGATCGGC 
CGGGTCGAAGGGGTGGAATGCATGATCGTCGGCAACGATGCCACGGTGAAGGGCGGCACCTACTATCCGCTG 
ACTGTGAAGAAGCACCTGCGGGCCCAGGCCATCGCCCTGGAAAACCGCCTGCCATGCATCTACCTGGTGGAC 
TCCGGCGGCGCCAACCTGCCGCGCCAGGACGAGGTGTTCCCCGACCGCGAGCACTTCGGCCGGATCTTCTTC 
AACCAGGCCAACATGAGTGCCCGCGGCATCCCGCAGATCGCCGTGGTCATGGGCTCCTGCACCGCCGGCGGG 
GCCTACGTGCCGGCGATGTCCGACGAAACCGTGATGGTGCGCGAACAGGCCACCATCTTCCTCGCCGGGCCG 
CCGCTGGTGAAGGCCGCTACCGGCGAGGTGGTCAGCGCCGAGGAACTTGGCGGCGCCGACGTGCACTGCAAG 
GTCTCCGGGGTCGCCGACCACTATGCCGAGGACGATGACCATGCCCTGGCCATCGCCCGCCGCTGCGTCGCC 
AACCTCAACTGGCGCAAGCAGGGCCAGCTGCAATGCCGTGCGCCGCGCGCACCGCTGTACCCCGCCGAGGAG 
CTGTACGGGGTGATTCCCGCCGACAGCAAGCAGCCCTACGACGTGCGCGAAGTGATCGCACGGCTGGTGGAC 
GGCTCCGAGTTCGACGAGTTCAAGGCGCTGTTCGGCACCACCCTGGTCTGCGGCTTCGCCCACCTGCACGGC 
TATCCGATAGCCATCCTGGCCAACAACGGGATCCTCTTCGCCGAGGCCGCGCAGAAAGGCGCGCACTTCATC 
GAACTGGCCTGCCAGCGCGGCATCCCGCTGCTGTTCCTGCAGAACATCACCGGTTTCATGGTCGGCCAGAAG 
TACGAGGCCGGTGGCATCGCCAAGCACGGCGCCAAGCTGGTGACCGCGGTGGCCTGCGCGCGGGTGCCGAAG 
TTCACCGTGCTGATCGGCGGCAGCTTCGGCGCCGGCAACTACGGCATGTGCGGACGCGCCTACGACCCGCGC 
TTCCTGTGGATGTGGCCGAACGCGAGGATCGGCGTGATGGGCGGCGAACAGGCCGCCGGGGTGCTCGCCCAG 
GTCAAGCGCGAGCAGGCCGAGCGCGCCGGCCAGCAGCTCGGCGTCGAAGAGGAGGCGAAGATCAAGGCACCG 
ATCCTCGAGCAGTACGAGCACCAGGGCCATCCCTACTACTCCAGCGCGCGACTGTGGGACGACGGCGTGATC 
GATCCGGCGCAGACCCGCGAGGTGCTCGCCCTGGCGCTTTCCGCCGCCCTCAACGCCCCCATCGAGCCGACC 
GCCTTCGGCGTGTTCCGCATGTGA