ViewGene
Locus Name:
GeneID:
Location:

GeneID:637
TrivialName: PA14_58360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58360
PAO1 Ortholog Locus:PA4497
Sequence Length:1599
Protein Length:532
Start: 5196776
Stop: 5198374
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07885.1|AE004863_5 (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 527/532 (99%), Positives = 529/532 (99%)
Sequence:
ATGCGACCACGCTCTGCCCTGCGCTACAGCCTGCTGCTACTCGCCTTCGCCGCCAGCGCCGCCATCCAGGCC
CAGCCGAAGACCCTGGCGGTGTGCACCGAAGCGGCGCCGGAAGGGTTCGATCCGGCCCGCTATACCTCCGGC
TACACCTTCGACGCCTCAGCCCATCCGCTGTACAACGCGCTGGCCGCGTTCGCTCCGGGCAGCGCCACGGTG
ATCCCGGCCCTGGCGGAAAGCTGGGACGTCTCCGCTGACGGCCTCGTCTACACCTTCCGCCTGCGCCAGGGC
GTGAAATTCCACAGCACCGACTACTTCAAGCCAAGCCGCGAATTCAACGCCGACGACGTGCTGTTCAGCTTC
CAGCGCATGCTCGATCCGCAGCACCCCGCCCACGACCTTTCGCCCAGCGGCTACCCCTACGCCGACGCCATG
CAACTGCGCGACATCATCGAGCGCATCGAGAAGATCGACGAGCACCAGGTGCGCTTCGTCCTCAAGCACCCG
GAGGCGCCGTTCCTCGCCGACCTGGCCATGCCGTTCGGCTCGATCCTCTCCGCCGAATATGCCGGCCAACTG
ATCGCCAGGGGCAAGGGCGACGAACTCAACAGCAAGCCGATCGGCACCGGCCCGTTCGTCTTCACCCGCTAC
CGCAAGGATGCCCAGGTGCGCTACGCGGCCAACCCCGACTACTGGAAGGGTAAGCCGGCCATCGACCACCTG
GTGCTGGCGATCACCCTCGATCCCAACGTGCGCGTGCAGCGCCTGCGCCGCAACGAATGCCAGATCGCCCTG
ACGCCCAAGCCGGAAGACGTCGCCGCGTTGCGCCAGGACCCGCAACTGACGGTGCTGGAAGAAGCGGCGATG
ATCACCTCCCACGCCGCGATCAACACCCGGCACGAACCGTTCGACGACCCGCGCGTGCGCCGGGCGATCGCC
ATGGGCTTCAACAAGTCGTCCTACCTGAAGATCGTCTTCGGCGACCAGGCCCGCCCGGCCATCGGCCCCTAC
CCGCCGATGCTGCTCGGCTACGACGACAGCATCCGCGACTGGCCCTACGACCCCGAACGAGCCAAGGCCCTG
CTGAAGGAAGCCGGCGTCGCCCCGGACACACCCCTGAACCTCTACATCAGCACCGGCAGCGGCCCCGGCGGC
AACCCGGCGCGAGTGGCGCAACTGATCCAGTCCGACCTGGCCGCCATCGGCATCCGGGTGAACATCCACCAG
TTCGAGTGGGGCGAGATGGTCAAGCGTACCAAGGCCGGCGAACACGACATGATGCTCTACAGCTGGATCGGC
GATAACGGCGACCCGGACAACTTCCTCACCCACAACCTCGGCTGTGCCTCGGTGGAGTCCGGGGAAAATCGC
GCGCGCTGGTGCGACAAGGGCTTCGACGAAGCCATCCGCAAGGCGCGCATGAGCAACGACGAGAGCCAACGG
GTAGCGTTGTACAAGGAAGCGCAGCGAATCTTCCACGAGCAGATGCCCTGGTTGCCGCTGGCGCATCCGTTG
ATGTTCGACGCGCAACGCAAGAACGTCAGCGGCTACCGCATGAGCCCGATGTCGGCGCGGGACTTTTCGCGG
GTGAAGCTGGACTGA
Translation:
MRPRSALRYSLLLLAFAASAAIQAQPKTLAVCTEAAPEGFDPARYTSGYTFDASAHPLYNALAAFAPGSATV
IPALAESWDVSADGLVYTFRLRQGVKFHSTDYFKPSREFNADDVLFSFQRMLDPQHPAHDLSPSGYPYADAM
QLRDIIERIEKIDEHQVRFVLKHPEAPFLADLAMPFGSILSAEYAGQLIARGKGDELNSKPIGTGPFVFTRY
RKDAQVRYAANPDYWKGKPAIDHLVLAITLDPNVRVQRLRRNECQIALTPKPEDVAALRQDPQLTVLEEAAM
ITSHAAINTRHEPFDDPRVRRAIAMGFNKSSYLKIVFGDQARPAIGPYPPMLLGYDDSIRDWPYDPERAKAL
LKEAGVAPDTPLNLYISTGSGPGGNPARVAQLIQSDLAAIGIRVNIHQFEWGEMVKRTKAGEHDMMLYSWIG
DNGDPDNFLTHNLGCASVESGENRARWCDKGFDEAIRKARMSNDESQRVALYKEAQRIFHEQMPWLPLAHPL
MFDAQRKNVSGYRMSPMSARDFSRVKLD*
AnnotationID:646GeneID:637
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:43
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transpor
Cell Localization:()
Synonyms:PA4497
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00496,COG0747,COG4166
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58009.1| (AE016872) dipeptide ABC transporter, periplasmic dipeptide-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 531

 Score =  598 bits (1541), Expect = e-170
 Identities = 280/528 (53%), Positives = 384/528 (72%), Gaps = 4/528 (0%)

>gb|AAN66507.1|AE016279_10 (AE016777) dipeptide ABC transporter, periplasmic dipeptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 544

 Score =  555 bits (1429), Expect = e-157
 Identities = 266/523 (50%), Positives = 361/523 (69%), Gaps = 2/523 (0%)






 
Structural Features:
pfam00496, SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5.
CD-Length = 508 residues,  99.4% aligned
Score =  410 bits (1054), Expect = 6e-115
Identities = 171/520 (32%), Positives = 265/520 (50%), Gaps = 20/520 (3%)

COG0747, DdpA, ABC-type dipeptide transport system, 
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  96.9% aligned
Score =  333 bits (853), Expect = 9e-92
Identities = 186/559 (33%), Positives = 264/559 (47%), Gaps = 56/559 (10%)

COG4166, OppA, ABC-type oligopeptide transport system, 
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  91.6% aligned
Score =  234 bits (599), Expect = 3e-62
Identities = 134/532 (25%), Positives = 213/532 (40%), Gaps = 52/532 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1277




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18419




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31540




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:637_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:637
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1079
                           PA4497_tr
                           translation of PA4497
                           532
                           99.06
                           99.43
                           0
                           2771.0
     

     
     
41219
                           gb|AAG07885.1|AE004863_5
                           (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           532
                           99.06
                           99.43
                           0
                           2771.0
     

     
     
1080
                           PA4502_tr
                           translation of PA4502
                           536
                           58.58
                           74.06
                           9
                           1656.0
     

     
     
41220
                           gb|AAG07890.1|AE004864_2
                           (AE004864) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           536
                           58.58
                           74.06
                           9
                           1656.0
     

     
     
41221
                           gb|AAO58009.1|
                           (AE016872) dipeptide ABC transporter, periplasmic dipeptide-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           536
                           53.17
                           72.20
                           9
                           1544.0
     

     






      

          
GC ORFID: 43639How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4497Glimmer Score: 

          
Start: 4460455Stop: 4462053

          
Length: 1599


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4497 translation of PA4497Homolog Bit Score 1071.0

          
Other Homologs:  t_PA4502 (ORF: BLASTX 640.0), psyr_15may02_Scaffold4_revised_gene5615 (ORF: BLASTX 589.0), t_PA5317 (ORF: BLASTX 539.0), psyr_15may02_Scaffold2_revised_gene3930 (ORF: BLASTX 514.0), t_PA4496 (ORF: BLASTX 511.0), t_PA4500 (ORF: BLASTX 490.0), psyr_15may02_Scaffold4_revised_gene5610 (ORF: BLASTX 484.0), psyr_15may02_Scaffold4_revised_gene5612 (ORF: BLASTX 464.0), psyr_15may02_Scaffold4_revised_gene5611 (ORF: BLASTX 452.0), t_PA4497 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGACCACGCTCTGCCCTGCGCTACAGCCTGCTGCTACTCGCCTTCGCCGCCAGCGCCGCCATCCAGGCC 
CAGCCGAAGACCCTGGCGGTGTGCACCGAAGCGGCGCCGGAAGGGTTCGATCCGGCCCGCTATACCTCCGGC 
TACACCTTCGACGCCTCAGCCCATCCGCTGTACAACGCGCTGGCCGCGTTCGCTCCGGGCAGCGCCACGGTG 
ATCCCGGCCCTGGCGGAAAGCTGGGACGTCTCCGCTGACGGCCTCGTCTACACCTTCCGCCTGCGCCAGGGC 
GTGAAATTCCACAGCACCGACTACTTCAAGCCAAGCCGCGAATTCAACGCCGACGACGTGCTGTTCAGCTTC 
CAGCGCATGCTCGATCCGCAGCACCCCGCCCACGACCTTTCGCCCAGCGGCTACCCCTACGCCGACGCCATG 
CAACTGCGCGACATCATCGAGCGCATCGAGAAGATCGACGAGCACCAGGTGCGCTTCGTCCTCAAGCACCCG 
GAGGCGCCGTTCCTCGCCGACCTGGCCATGCCGTTCGGCTCGATCCTCTCCGCCGAATATGCCGGCCAACTG 
ATCGCCAGGGGCAAGGGCGACGAACTCAACAGCAAGCCGATCGGCACCGGCCCGTTCGTCTTCACCCGCTAC 
CGCAAGGATGCCCAGGTGCGCTACGCGGCCAACCCCGACTACTGGAAGGGTAAGCCGGCCATCGACCACCTG 
GTGCTGGCGATCACCCTCGATCCCAACGTGCGCGTGCAGCGCCTGCGCCGCAACGAATGCCAGATCGCCCTG 
ACGCCCAAGCCGGAAGACGTCGCCGCGTTGCGCCAGGACCCGCAACTGACGGTGCTGGAAGAAGCGGCGATG 
ATCACCTCCCACGCCGCGATCAACACCCGGCACGAACCGTTCGACGACCCGCGCGTGCGCCGGGCGATCGCC 
ATGGGCTTCAACAAGTCGTCCTACCTGAAGATCGTCTTCGGCGACCAGGCCCGCCCGGCCATCGGCCCCTAC 
CCGCCGATGCTGCTCGGCTACGACGACAGCATCCGCGACTGGCCCTACGACCCCGAACGAGCCAAGGCCCTG 
CTGAAGGAAGCCGGCGTCGCCCCGGACACACCCCTGAACCTCTACATCAGCACCGGCAGCGGCCCCGGCGGC 
AACCCGGCGCGAGTGGCGCAACTGATCCAGTCCGACCTGGCCGCCATCGGCATCCGGGTGAACATCCACCAG 
TTCGAGTGGGGCGAGATGGTCAAGCGTACCAAGGCCGGCGAACACGACATGATGCTCTACAGCTGGATCGGC 
GATAACGGCGACCCGGACAACTTCCTCACCCACAACCTCGGCTGTGCCTCGGTGGAGTCCGGGGAAAATCGC 
GCGCGCTGGTGCGACAAGGGCTTCGACGAAGCCATCCGCAAGGCGCGCATGAGCAACGACGAGAGCCAACGG 
GTAGCGTTGTACAAGGAAGCGCAGCGAATCTTCCACGAGCAGATGCCCTGGTTGCCGCTGGCGCATCCGTTG 
ATGTTCGACGCGCAACGCAAGAACGTCAGCGGCTACCGCATGAGCCCGATGTCGGCGCGGGACTTTTCGCGG 
GTGAAGCTGGACTGA