ViewGene
Locus Name:
GeneID:
Location:

GeneID:636
TrivialName: PA14_58420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58420
PAO1 Ortholog Locus:PA4502
Sequence Length:1602
Protein Length:533
Start: 5203987
Stop: 5205588
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07890.1|AE004864_2 (AE004864) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 530/533 (99%), Positives = 530/533 (99%), Gaps = 2/533 (0%)
Sequence:
ATGCTCCATCCGTTGCTCCGACACCTGCCCCTGGCCCTGGCCCTGGCGCTATGCGCCGCCGGCGCGGCCCAG
GCGAAGAACCTGGTGGTCTGCACCGAGGCCAGCCCGGAAGGCTTCGACATCGTCCAGTACACCGGCGCGGTG
ACCGCCGACGCCTCCGCGGAAACCGTGTTCAACCGCCTGCTCGCCTTCCGCCCCGGCACCACCGAGGTGATC
CCGGGGCTGGCCGAGCGCTGGGACGTCAGCGCCGACGGACTGAGCTATACCTTCCACCTGCGCCCCGGCGTG
AAATTCCATACCACCGACTACTTCAAGCCGACCCGGAGCCTGAATGCCGATGATGTGCTGTGGACCTTCCAG
CGCGCCCTCGATCCGAAGCATCCCTGGCATGCCTCGGCGCTGCGCGGCTACGCCTACTTCGACGCGATGGGC
ATGGGCGAGCTGATCAAGTCGGTGGAAAAGGTCGACGAGCTCACCGTGCGCTTCGTCCTCAACCGTCCCGAA
GCGCCGTTCCTGCGCGATATGGCGATGCCCTTCGCGTCCATCTATTCCGCCGAGTACGGCGACCAGTTGCTC
GCCGCCGGCAAGCAGGGCCAGTTGAACAACCAGCCGATCGGCACCGGGCCGTTCGTCTTCAAGCGCTACGCC
AAGGACGCCCAGGTCCGCTACACGGCGAACCCGGACTACTACGCCGGCAAGCCGCCGATCGACAATCTGGTG
TTCGCCATTACCCTCGATCCCAACGTGCGCATGCAGAAGGTCCGTGCCGGCGAGTGCCAGGTCTCGCTGTAC
CCGAAACCGGAGGACGTGCCGCGCCTGAAGCAGGACCCGAACCTGGCGGTGGACGAGATCGATGCCCTGCTG
ACCACCTACATTGCCATCAACACCCAGCACAAGCCGCTCGACGACCCGCGCGTGCGCCAGGCGATCAACCTC
GCTCTGGACAAGAAGGCCATGCTCGACGCGGTGTTCGGCCCCGGCGCGGCCAGTCCGGCTGTCGGTCCCTAT
CCCCCGACCCTGCTCGGCTACAACCATTCGATCCAGGACTGGCCGCACGATCCCGAACGCGCCAGGGCGCTG
CTCAAGGAAGCCGGTGCGGAAAATCTCAGGATCACCCTGTTCATTCGCAACGGCACCTCGCCTACCATCCCC
AACCCCGCCCTGGCAGCACAGATGCTGCAAGCAGACCTGGCCAAGGCCGGCATCCAGCTGACCATCCGTTCC
CTGGAGTGGGGCGAGCTGCTCAAGCGTTCGAAGGCCGGCGAGCACGACCTGTCGCTGCTTGGCTGGGCCGGC
GACAACGGCGACCCGGACAACTTCCTCAGCCCGAACCTGAGCTGCGCCGCCGCCGAGTCGGGTGAAAACCAG
GCGCGCTGGTGCGACAAGGACTTCGAGGCGCTGATGCGCAAGGCCCGCGAGGTGAGCGATCCGGCCGAGCGG
GCGAAACTGTACGAGCAGGCCCAGGTGGTATTCCACGAACAGGCCCCATGGATACCGCTGGCCTACCCGAAG
CTGTTCAACGTCCGGCGGAACACGGTGCAGGGCTACGTGATCAATCCGTTGAGCAACAACAACTTCGCCACC
ACCTCGGTGAAGCCCTAG
Translation:
MLHPLLRHLPLALALALCAAGAAQAKNLVVCTEASPEGFDIVQYTGAVTADASAETVFNRLLAFRPGTTEVI
PGLAERWDVSADGLSYTFHLRPGVKFHTTDYFKPTRSLNADDVLWTFQRALDPKHPWHASALRGYAYFDAMG
MGELIKSVEKVDELTVRFVLNRPEAPFLRDMAMPFASIYSAEYGDQLLAAGKQGQLNNQPIGTGPFVFKRYA
KDAQVRYTANPDYYAGKPPIDNLVFAITLDPNVRMQKVRAGECQVSLYPKPEDVPRLKQDPNLAVDEIDALL
TTYIAINTQHKPLDDPRVRQAINLALDKKAMLDAVFGPGAASPAVGPYPPTLLGYNHSIQDWPHDPERARAL
LKEAGAENLRITLFIRNGTSPTIPNPALAAQMLQADLAKAGIQLTIRSLEWGELLKRSKAGEHDLSLLGWAG
DNGDPDNFLSPNLSCAAAESGENQARWCDKDFEALMRKAREVSDPAERAKLYEQAQVVFHEQAPWIPLAYPK
LFNVRRNTVQGYVINPLSNNNFATTSVKP*
AnnotationID:645GeneID:636
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:57
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC dipeptid
Cell Localization:()
Synonyms:PA4502
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00496,COG0747,COG4166
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58009.1| (AE016872) dipeptide ABC transporter, periplasmic dipeptide-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 531

 Score =  709 bits (1831), Expect = 0.0
 Identities = 336/523 (64%), Positives = 418/523 (79%), Gaps = 2/523 (0%)


>gb|AAN66507.1|AE016279_10 (AE016777) dipeptide ABC transporter, periplasmic dipeptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 544

 Score =  709 bits (1830), Expect = 0.0
 Identities = 350/536 (65%), Positives = 418/536 (77%), Gaps = 4/536 (0%)










 
Structural Features:
pfam00496, SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5.
CD-Length = 508 residues,  98.8% aligned
Score =  412 bits (1059), Expect = 2e-115
Identities = 185/518 (35%), Positives = 273/518 (52%), Gaps = 21/518 (4%)

COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  96.9% aligned
Score =  343 bits (879), Expect = 8e-95
Identities = 186/559 (33%), Positives = 267/559 (47%), Gaps = 46/559 (8%)

COG4166, OppA, ABC-type oligopeptide transport system, 
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  94.5% aligned
Score =  238 bits (608), Expect = 3e-63
Identities = 145/547 (26%), Positives = 229/547 (41%), Gaps = 52/547 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1275




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18417




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31545




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:636_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:636
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1074
                           PA4502_tr
                           translation of PA4502
                           533
                           99.43
                           99.43
                           2
                           2773.0
     

     
     
41173
                           gb|AAG07890.1|AE004864_2
                           (AE004864) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           533
                           99.43
                           99.43
                           2
                           2773.0
     

     
     
41175
                           gb|AAN66507.1|AE016279_10
                           (AE016777) dipeptide ABC transporter, periplasmic dipeptide-binding protein [Pseudomonas putida KT2440]
                           545
                           64.22
                           76.69
                           13
                           1836.0
     

     
     
41174
                           gb|AAO58009.1|
                           (AE016872) dipeptide ABC transporter, periplasmic dipeptide-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           537
                           62.56
                           78.21
                           10
                           1831.0
     

     
     
1075
                           PA4497_tr
                           translation of PA4497
                           536
                           58.95
                           74.25
                           7
                           1668.0
     

     






      

          
GC ORFID: 43638How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4502Glimmer Score: 

          
Start: 4467665Stop: 4469266

          
Length: 1602


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4502 translation of PA4502Homolog Bit Score 1071.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5615 (ORF: BLASTX 704.0), t_PA4497 (ORF: BLASTX 646.0), t_PA5317 (ORF: BLASTX 565.0), psyr_15may02_Scaffold2_revised_gene3930 (ORF: BLASTX 557.0), t_PA4496 (ORF: BLASTX 511.0), psyr_15may02_Scaffold4_revised_gene5610 (ORF: BLASTX 510.0), t_PA4500 (ORF: BLASTX 490.0), psyr_15may02_Scaffold4_revised_gene5611 (ORF: BLASTX 483.0), psyr_15may02_Scaffold4_revised_gene5612 (ORF: BLASTX 483.0), t_PA4502 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCATCCGTTGCTCCGACACCTGCCCCTGGCCCTGGCCCTGGCGCTATGCGCCGCCGGCGCGGCCCAG 
GCGAAGAACCTGGTGGTCTGCACCGAGGCCAGCCCGGAAGGCTTCGACATCGTCCAGTACACCGGCGCGGTG 
ACCGCCGACGCCTCCGCGGAAACCGTGTTCAACCGCCTGCTCGCCTTCCGCCCCGGCACCACCGAGGTGATC 
CCGGGGCTGGCCGAGCGCTGGGACGTCAGCGCCGACGGACTGAGCTATACCTTCCACCTGCGCCCCGGCGTG 
AAATTCCATACCACCGACTACTTCAAGCCGACCCGGAGCCTGAATGCCGATGATGTGCTGTGGACCTTCCAG 
CGCGCCCTCGATCCGAAGCATCCCTGGCATGCCTCGGCGCTGCGCGGCTACGCCTACTTCGACGCGATGGGC 
ATGGGCGAGCTGATCAAGTCGGTGGAAAAGGTCGACGAGCTCACCGTGCGCTTCGTCCTCAACCGTCCCGAA 
GCGCCGTTCCTGCGCGATATGGCGATGCCCTTCGCGTCCATCTATTCCGCCGAGTACGGCGACCAGTTGCTC 
GCCGCCGGCAAGCAGGGCCAGTTGAACAACCAGCCGATCGGCACCGGGCCGTTCGTCTTCAAGCGCTACGCC 
AAGGACGCCCAGGTCCGCTACACGGCGAACCCGGACTACTACGCCGGCAAGCCGCCGATCGACAATCTGGTG 
TTCGCCATTACCCTCGATCCCAACGTGCGCATGCAGAAGGTCCGTGCCGGCGAGTGCCAGGTCTCGCTGTAC 
CCGAAACCGGAGGACGTGCCGCGCCTGAAGCAGGACCCGAACCTGGCGGTGGACGAGATCGATGCCCTGCTG 
ACCACCTACATTGCCATCAACACCCAGCACAAGCCGCTCGACGACCCGCGCGTGCGCCAGGCGATCAACCTC 
GCTCTGGACAAGAAGGCCATGCTCGACGCGGTGTTCGGCCCCGGCGCGGCCAGTCCGGCTGTCGGTCCCTAT 
CCCCCGACCCTGCTCGGCTACAACCATTCGATCCAGGACTGGCCGCACGATCCCGAACGCGCCAGGGCGCTG 
CTCAAGGAAGCCGGTGCGGAAAATCTCAGGATCACCCTGTTCATTCGCAACGGCACCTCGCCTACCATCCCC 
AACCCCGCCCTGGCAGCACAGATGCTGCAAGCAGACCTGGCCAAGGCCGGCATCCAGCTGACCATCCGTTCC 
CTGGAGTGGGGCGAGCTGCTCAAGCGTTCGAAGGCCGGCGAGCACGACCTGTCGCTGCTTGGCTGGGCCGGC 
GACAACGGCGACCCGGACAACTTCCTCAGCCCGAACCTGAGCTGCGCCGCCGCCGAGTCGGGTGAAAACCAG 
GCGCGCTGGTGCGACAAGGACTTCGAGGCGCTGATGCGCAAGGCCCGCGAGGTGAGCGATCCGGCCGAGCGG 
GCGAAACTGTACGAGCAGGCCCAGGTGGTATTCCACGAACAGGCCCCATGGATACCGCTGGCCTACCCGAAG 
CTGTTCAACGTCCGGCGGAACACGGTGCAGGGCTACGTGATCAATCCGTTGAGCAACAACAACTTCGCCACC 
ACCTCGGTGAAGCCCTAG