ViewGene

Locus Name:
GeneID:
Location:

GeneID:634
TrivialName: PA14_07650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07650
PAO1 Ortholog Locus:PA0586
Sequence Length:1554
Protein Length:517
Start: 658182
Stop: 656629
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03975.1|AE004494_11 (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 517/517 (100%), Positives = 517/517 (100%)
Sequence:
ATGAGCAAGCGCCAGCCCATCGCCACCGGCTCGGAATGGACCTTCGAGCTGATCCAGCAGTACGACCGGGAA
ATCAGCAGGATCGCCGAGCGCTATGCCCTGGATACCTATCCGAACCAGATCGAGGTGATCACCGCCGAGCAG
ATGATGGACGCCTACGCCTCGGTGGGCATGCCGATCGGCTATAACCACTGGTCCTACGGCAAGCACTTCCTC
AGTACGGAAAAGAACTACAAGCGTGGCCAGATGGGCCTGGCCTACGAGATCGTGATCAACTCCGACCCCTGC
ATCGCCTACCTGATGGAGGAAAACACCCAGTGCATGCAGGCGCTGGTGATCGCCCACGCCTGCTACGGGCAC
AACAGTTTCTTCAAGGGCAACTACCTGTTCCGCACCTGGACCGATGCCAGTTCGATCATCGATTACCTGGTG
TTCGCCAAGCAGTACATCATGCAGTGCGAGGAGCGCTACGGGATCGACGCGGTGGAAGACCTGCTCGACTCC
TGCCACGCCCTGATGAACTACGGTGTCGACCGCTACAAGCGGCCCTACCCGATTTCCGCGGAAGAGGAGCGG
CAGCGGCAGAAGGAGCGCGAGGAACTGATCCAGCGCCAGGTCAACGACCTCTGGCGGACCATCCCGCGCGTC
GGCGGCAAGGACAAGGAACAATCCATGGCGCGCTATCCGAGCGAGCCGCAGGAGAACATCCTCTACTTCATC
GAGAAGAACGCGCCGCTTCTGGAGCCCTGGCAGCGCGAGGTGATCCGCATCGTGCGCAAGATCGCCCAGTAT
TTCTACCCGCAACGCCAGACCCAGGTGATGAACGAAGGCTGGGCGACCTTCTGGCACTACACGCTGCTCAAC
GACCTCTACGACGAAGGCCTGGTCAACGACGGCTTCATGATGGAGTTCCTGCAATACCACACCAGCGTGGTC
TACCAGCCGTCCTTCGACAGCCCCTACTACAGCGGCATCAACCCCTACGCCCTGGGCTTCGCCATGTACCGC
GACATCCGCCGCATCTGCGAGGAACCTACCGACGAGGACCGCCGCTGGTTCCCGGATATCGCCGGCAGCGAC
TGGCTGGCCACGCTGAAGTTCGCCATGAAGAGCTTCAAGGACGAAAGCTTCATCCTGCAGTTCCTCTCGCCC
AAGGTGATTCGCGACCTGAAGCTGTTCAGCATTCTCGACGACGACCAGAAGGACGACCTGCTGGTCGCGGCG
ATCCACGACGAAGCCGGCTACCGCACCATCCGCGAGACCCTGGCGGCGCAGTACAACCTCGGCAACCGCGAG
CCGAACATCCAGATCTGGAACGTCGACCGTCGCGGCGACCGCTCGCTGACCCTGCGCCACCAGCAGTTCGAC
CGCCAGCCGCTGAGCGACTCCACCGCCGACGTGCTCAAGCACCTGCATCGCTTGTGGGGCTTCGATATCCAC
CTGGAGACCCTGCAGGGCGACCAGCTCGTGCAGACCCACCACATGCCGCCCAAGGGCGCCAGCGAGGGCGAG
GAAGGCTACCCGCGCCTGGACCTGATCATCCCGCCCATTTGA
Translation:
MSKRQPIATGSEWTFELIQQYDREISRIAERYALDTYPNQIEVITAEQMMDAYASVGMPIGYNHWSYGKHFL
STEKNYKRGQMGLAYEIVINSDPCIAYLMEENTQCMQALVIAHACYGHNSFFKGNYLFRTWTDASSIIDYLV
FAKQYIMQCEERYGIDAVEDLLDSCHALMNYGVDRYKRPYPISAEEERQRQKEREELIQRQVNDLWRTIPRV
GGKDKEQSMARYPSEPQENILYFIEKNAPLLEPWQREVIRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLLN
DLYDEGLVNDGFMMEFLQYHTSVVYQPSFDSPYYSGINPYALGFAMYRDIRRICEEPTDEDRRWFPDIAGSD
WLATLKFAMKSFKDESFILQFLSPKVIRDLKLFSILDDDQKDDLLVAAIHDEAGYRTIRETLAAQYNLGNRE
PNIQIWNVDRRGDRSLTLRHQQFDRQPLSDSTADVLKHLHRLWGFDIHLETLQGDQLVQTHHMPPKGASEGE
EGYPRLDLIIPPI*
AnnotationID:643GeneID:634
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative sporulation protein
Cell Localization:()
Synonyms:ycgB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04293
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54087.1| (AE016857) SpoVR like family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 520

 Score =  934 bits (2413), Expect = 0.0
 Identities = 438/513 (85%), Positives = 482/513 (93%), Gaps = 3/513 (0%)

>gb|AAM85737.1|AE013821_3 (AE013821) putative sporulation protein [Yersinia pestis KIM]
          Length = 511

 Score =  738 bits (1904), Expect = 0.0
 Identities = 340/496 (68%), Positives = 405/496 (81%)

>gb|AAG56039.1|AE005335_12 (AE005335) putative sporulation protein [Escherichia coli O157:H7
           EDL933]
          Length = 510

 Score =  727 bits (1876), Expect = 0.0
 Identities = 340/496 (68%), Positives = 413/496 (83%), Gaps = 7/496 (1%)

Structural Features:
pfam04293, SpoVR, SpoVR like protein. 
CD-Length = 435 residues, 100.0% aligned
Score =  731 bits (1888), Expect = 0.0
Identities = 324/437 (74%), Positives = 369/437 (84%), Gaps = 2/437 (0%)
Genomic Context:
Comment:
ReferenceID:1271
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18413
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33874
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:634_cdd.html
URL:
Homologs By Global Alignment
Gene ID:634

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1071 PA0586_tr translation of PA0586 517 99.99 99.99 0 2773.0
41118 gb|AAG03975.1|AE004494_11 (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 517 99.99 99.99 0 2773.0
41119 gb|AAO54087.1| (AE016857) SpoVR like family protein [Pseudomonas syringae pv. tomato str. DC3000] 522 83.90 92.52 7 2413.0
41120 gb|AAN66026.1|AE016231_9 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 524 82.82 90.83 9 2390.0
41121 gb|AAQ59465.1| (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 533 66.60 80.48 36 1933.0
GC ORFID: 43636How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0586Glimmer Score:
Start: 6459525Stop: 6457972
Length: 1554
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0586 translation of PA0586Homolog Bit Score 1072.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6762 (ORF: BLASTX 934.0), t_PA0586 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAAGCGCCAGCCCATCGCCACCGGCTCGGAATGGACCTTCGAGCTGATCCAGCAGTACGACCGGGAA
ATCAGCAGGATCGCCGAGCGCTATGCCCTGGATACCTATCCGAACCAGATCGAGGTGATCACCGCCGAGCAG
ATGATGGACGCCTACGCCTCGGTGGGCATGCCGATCGGCTATAACCACTGGTCCTACGGCAAGCACTTCCTC
AGTACGGAAAAGAACTACAAGCGTGGCCAGATGGGCCTGGCCTACGAGATCGTGATCAACTCCGACCCCTGC
ATCGCCTACCTGATGGAGGAAAACACCCAGTGCATGCAGGCGCTGGTGATCGCCCACGCCTGCTACGGGCAC
AACAGTTTCTTCAAGGGCAACTACCTGTTCCGCACCTGGACCGATGCCAGTTCGATCATCGATTACCTGGTG
TTCGCCAAGCAGTACATCATGCAGTGCGAGGAGCGCTACGGGATCGACGCGGTGGAAGACCTGCTCGACTCC
TGCCACGCCCTGATGAACTACGGTGTCGACCGCTACAAGCGGCCCTACCCGATTTCCGCGGAAGAGGAGCGG
CAGCGGCAGAAGGAGCGCGAGGAACTGATCCAGCGCCAGGTCAACGACCTCTGGCGGACCATCCCGCGCGTC
GGCGGCAAGGACAAGGAACAATCCATGGCGCGCTATCCGAGCGAGCCGCAGGAGAACATCCTCTACTTCATC
GAGAAGAACGCGCCGCTTCTGGAGCCCTGGCAGCGCGAGGTGATCCGCATCGTGCGCAAGATCGCCCAGTAT
TTCTACCCGCAACGCCAGACCCAGGTGATGAACGAAGGCTGGGCGACCTTCTGGCACTACACGCTGCTCAAC
GACCTCTACGACGAAGGCCTGGTCAACGACGGCTTCATGATGGAGTTCCTGCAATACCACACCAGCGTGGTC
TACCAGCCGTCCTTCGACAGCCCCTACTACAGCGGCATCAACCCCTACGCCCTGGGCTTCGCCATGTACCGC
GACATCCGCCGCATCTGCGAGGAACCTACCGACGAGGACCGCCGCTGGTTCCCGGATATCGCCGGCAGCGAC
TGGCTGGCCACGCTGAAGTTCGCCATGAAGAGCTTCAAGGACGAAAGCTTCATCCTGCAGTTCCTCTCGCCC
AAGGTGATTCGCGACCTGAAGCTGTTCAGCATTCTCGACGACGACCAGAAGGACGACCTGCTGGTCGCGGCG
ATCCACGACGAAGCCGGCTACCGCACCATCCGCGAGACCCTGGCGGCGCAGTACAACCTCGGCAACCGCGAG
CCGAACATCCAGATCTGGAACGTCGACCGTCGCGGCGACCGCTCGCTGACCCTGCGCCACCAGCAGTTCGAC
CGCCAGCCGCTGAGCGACTCCACCGCCGACGTGCTCAAGCACCTGCATCGCTTGTGGGGCTTCGATATCCAC
CTGGAGACCCTGCAGGGCGACCAGCTCGTGCAGACCCACCACATGCCGCCCAAGGGCGCCAGCGAGGGCGAG
GAAGGCTACCCGCGCCTGGACCTGATCATCCCGCCCATTTGA