ViewGene
Locus Name:
GeneID:
Location:

GeneID:633
TrivialName: PA14_43000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43000
PAO1 Ortholog Locus:PA1660
Sequence Length:1581
Protein Length:526
Start: 3826622
Stop: 3825042
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05049.1|AE004594_1 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 526/526 (100%), Positives = 526/526 (100%)
Sequence:
ATGATGCACCTGCTGTGGCCGAACTATATGCGCCCGCTGCCGGCTTTCAGCATTCTCCAGTTCGACCCCCTG
ACCCGCCCGGGCGGGGCGCTGCGCGTGGAGCGCGATACGCCGGTCGAGAGCCGGCCGGTGGGCGAGGTCGCC
TGTCGCTTCCGTACCTGCTACGCCACCGAAGTCCTGCCGCTGGTGCTGGAGGCGCTCAACTATTCGGTGACC
GGCGAGGGTGCGCTGCTCGGCCTGCGCCTGGCGATGAACTGCGACGGGCATCTCGGCGAGCTGGGCCTGAGT
CGGCTGCGCCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTCTATCTGTGCCTGCTGCGCAACCTG
GAGAGCATCCAACTGATTCCGCTGGACGCCCATGGGCGGCCGCTGGATGGCGTGGCCGGCAAGCCGATGTCG
TTCCGCCTGACGGGCGAGCGGGTGCAGCCGGTGGGGTTCGCCGAAGACGAGGCGTTGATTCCCTATCCGCTG
AATACCTTCCGTGGCTATCGCTACCTGCAGGAATACTTCGCGTTCCAGGACAAGTTCCTGTTCGTCGACGTG
GATGGCCTTGACCTGCTCGGCGCTCTGCCCGAGGAAACCCTCAAGCAGGTCCGCGGCCTCGAGTTGCGCTTC
GATATCCGCAAGAGCGGCATCCAGCGCCTGCACCCGACGCTGGAGAACGTCAAGCTGTACTGTACGCCGGTG
GCCAACCTGTTCCGCCACGATGCGCTGCCGATCCGCCTAGACGGCAAGCAGGACGAATACCTGCTGATGCCG
GCCGAATACAGCCTGGAGGACTGCGGGGTGTTCTCGGTAGAGGGCGTCACCGGCTGGCGGCCGGGCGGGCTC
GGCTACCAGGCCTACGTGCCGTTCGAGTCCTTCGAGCACGATCCCAGCTTCGACGTTCCCGAAGCACGGCCC
CACTACAGCGTCCGGCAACGTACCTCGTTGCTGCACGATGGCCTGGACACCTACCTGAGCTTCGGCATCCGC
CATCCCGAGCAGATCGAGACGCTGTCGGTGGAACTGACCTGCACCAACCAGAACCTGCCCCAACGGCTGCGC
CTGGGCGATATCTGCGTCGCCTGCGAAGGCACGCCGGAGTTCCTCGGTTTCCGCAATATCACCCCGGCGACG
CCGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAAACTGATCAGCAACATGTCGCTCAACTACCTG
TCGCTGGCCAACGTCGACGCGCTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCAT
GCGGCGAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGGCGGTCCGCCACGAGCATGTCGACCGCCTGCAT
CGGGGCCTGCCGCTGCGCGGCTTGCGTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGAC
CTGTTCGTGTTCGCTTCGGTTCTGAACGAATTTTTCGCGCTTTACGCCAGCATCAACTCCTACCACGAGTTG
CGGGTGAGGAGCACACAGGGAGACGTGTACCAATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAA
Translation:
MMHLLWPNYMRPLPAFSILQFDPLTRPGGALRVERDTPVESRPVGEVACRFRTCYATEVLPLVLEALNYSVT
GEGALLGLRLAMNCDGHLGELGLSRLRLHLAGERYISQMLYLCLLRNLESIQLIPLDAHGRPLDGVAGKPMS
FRLTGERVQPVGFAEDEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDVDGLDLLGALPEETLKQVRGLELRF
DIRKSGIQRLHPTLENVKLYCTPVANLFRHDALPIRLDGKQDEYLLMPAEYSLEDCGVFSVEGVTGWRPGGL
GYQAYVPFESFEHDPSFDVPEARPHYSVRQRTSLLHDGLDTYLSFGIRHPEQIETLSVELTCTNQNLPQRLR
LGDICVACEGTPEFLGFRNITPATPSYAPPLNRDFLWKLISNMSLNYLSLANVDALKVILETYDLPRYYDQH
AAKVSKRLLGGLKAVRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASINSYHEL
RVRSTQGDVYQWKPRMGLQPLL*
AnnotationID:642GeneID:633
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1660
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18411




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37167




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:633_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:633
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1070
                           PA1660_tr
                           translation of PA1660
                           526
                           99.99
                           99.99
                           0
                           2778.0
     

     
     
41114
                           gb|AAG05049.1|AE004594_1
                           (AE004594) hypothetical protein PA1660 [Pseudomonas aeruginosa PAO1]
                           526
                           99.99
                           99.99
                           0
                           2778.0
     

     
     
41115
                           gb|AAO58849.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           526
                           82.31
                           90.49
                           9
                           2325.0
     

     
     
41116
                           gb|AAO56051.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           595
                           56.63
                           69.24
                           69
                           1802.0
     

     
     
41117
                           gb|AAM83873.1|AE013627_10
                           (AE013627) hypothetical [Yersinia pestis KIM]
                           552
                           19.20
                           28.98
                           288
                           461.0
     

     






      

          
GC ORFID: 43635How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1660Glimmer Score: 

          
Start: 1127287Stop: 1128867

          
Length: 1581


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1660 translation of PA1660Homolog Bit Score 1074.0

          
Other Homologs:  t_PA1660 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGCACCTGCTGTGGCCGAACTATATGCGCCCGCTGCCGGCTTTCAGCATTCTCCAGTTCGACCCCCTG 
ACCCGCCCGGGCGGGGCGCTGCGCGTGGAGCGCGATACGCCGGTCGAGAGCCGGCCGGTGGGCGAGGTCGCC 
TGTCGCTTCCGTACCTGCTACGCCACCGAAGTCCTGCCGCTGGTGCTGGAGGCGCTCAACTATTCGGTGACC 
GGCGAGGGTGCGCTGCTCGGCCTGCGCCTGGCGATGAACTGCGACGGGCATCTCGGCGAGCTGGGCCTGAGT 
CGGCTGCGCCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTCTATCTGTGCCTGCTGCGCAACCTG 
GAGAGCATCCAACTGATTCCGCTGGACGCCCATGGGCGGCCGCTGGATGGCGTGGCCGGCAAGCCGATGTCG 
TTCCGCCTGACGGGCGAGCGGGTGCAGCCGGTGGGGTTCGCCGAAGACGAGGCGTTGATTCCCTATCCGCTG 
AATACCTTCCGTGGCTATCGCTACCTGCAGGAATACTTCGCGTTCCAGGACAAGTTCCTGTTCGTCGACGTG 
GATGGCCTTGACCTGCTCGGCGCTCTGCCCGAGGAAACCCTCAAGCAGGTCCGCGGCCTCGAGTTGCGCTTC 
GATATCCGCAAGAGCGGCATCCAGCGCCTGCACCCGACGCTGGAGAACGTCAAGCTGTACTGTACGCCGGTG 
GCCAACCTGTTCCGCCACGATGCGCTGCCGATCCGCCTAGACGGCAAGCAGGACGAATACCTGCTGATGCCG 
GCCGAATACAGCCTGGAGGACTGCGGGGTGTTCTCGGTAGAGGGCGTCACCGGCTGGCGGCCGGGCGGGCTC 
GGCTACCAGGCCTACGTGCCGTTCGAGTCCTTCGAGCACGATCCCAGCTTCGACGTTCCCGAAGCACGGCCC 
CACTACAGCGTCCGGCAACGTACCTCGTTGCTGCACGATGGCCTGGACACCTACCTGAGCTTCGGCATCCGC 
CATCCCGAGCAGATCGAGACGCTGTCGGTGGAACTGACCTGCACCAACCAGAACCTGCCCCAACGGCTGCGC 
CTGGGCGATATCTGCGTCGCCTGCGAAGGCACGCCGGAGTTCCTCGGTTTCCGCAATATCACCCCGGCGACG 
CCGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAAACTGATCAGCAACATGTCGCTCAACTACCTG 
TCGCTGGCCAACGTCGACGCGCTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCAT 
GCGGCGAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGGCGGTCCGCCACGAGCATGTCGACCGCCTGCAT 
CGGGGCCTGCCGCTGCGCGGCTTGCGTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGAC 
CTGTTCGTGTTCGCTTCGGTTCTGAACGAATTTTTCGCGCTTTACGCCAGCATCAACTCCTACCACGAGTTG 
CGGGTGAGGAGCACACAGGGAGACGTGTACCAATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAA