ViewGene
Locus Name:
GeneID:
Location:

GeneID:6327
TrivialName: PA14_20600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20600
PAO1 Ortholog Locus:
Sequence Length:675
Protein Length:224
Start: 1773139
Stop: 1773813
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68753.1|AE016507_4 (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 116/217 (53%), Positives = 165/217 (76%), Gaps = 1/217 (0%)
Sequence:
ATGAAACGACTTCGAGTTGCCGTTTCCTGCGCGCTGCTGGCGGCGCTGGTGGGTTGTTCCAATGGTCAGGTC
AAGCCGGAAAACTACTCGGGCTTCATCGGTGACTATTCGACGCTGGCGCCTGCCACCGCGCCTTCCGGAGCG
CCGCTCCTGCGCTGGGTAGACCCGCAGGCGGACGTGCGGCGCTACCAGCGGATCTACATCGAGCCCAGCAGG
TTCTATCCGGTCCCGAAACCGAACGACAAGGTTTCCGCGAAGACGCTTGCGGACATCACGACCTACTACGAT
CAGGCATTGCGCCGTGAGCTGGGCAAGAGCCTGCCGCTGGCCAGCGCCCCCGGCCCGGGTATCCTGGTGCTG
AAACCGGCGATCACCGCAGTTTCCAGCCATACCCAGGGTCTACGGCCATACGAGGTCATCCCCATCGCGCTG
ATCGCTGCTGGGATGAGCACGGCGGTCGGGATTCGCGACCAGGATACCCAGATCGCCACCGAGGCCATGCTG
CTCGACGGTGGGGACAACAAGGTATTGGCGAAGATGGTGCGCCAGGGCACCGGCAAGGCGCTGGACGATTCC
GATCAGCCGATCACGGGAGACGATGTCAAGGCGGTGCTGGACGGTTGGGCGGCCGACATGCGCATGTCGTAC
GAGAAGACTCTCGGTTCTCGTCGATGA
Translation:
MKRLRVAVSCALLAALVGCSNGQVKPENYSGFIGDYSTLAPATAPSGAPLLRWVDPQADVRRYQRIYIEPSR
FYPVPKPNDKVSAKTLADITTYYDQALRRELGKSLPLASAPGPGILVLKPAITAVSSHTQGLRPYEVIPIAL
IAAGMSTAVGIRDQDTQIATEAMLLDGGDNKVLAKMVRQGTGKALDDSDQPITGDDVKAVLDGWAADMRMSY
EKTLGSRR*
AnnotationID:6328GeneID:6327
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 12:12:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|77458741|ref|YP_348247.1|  hypothetical protein Pfl_2516 [Pseudomonas fluorescens PfO-1]
gi|77382744|gb|ABA74257.1|  conserved hypothetical protein [Pseudomonas fluorescens PfO-1]
     Length=223
     Score =  259 bits (663),  Expect = 3e-68
     Identities = 124/218 (56%), Positives = 167/218 (76%), Gaps = 2/218 (0%)

gi|26989864|ref|NP_745289.1|  hypothetical protein PP3145 [Pseudomonas putida KT2440]
gi|24984771|gb|AAN68753.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
     Length=273
     Score =  252 bits (644),  Expect = 6e-66
     Identities = 116/217 (53%), Positives = 165/217 (76%), Gaps = 1/217 (0%)

gi|70730205|ref|YP_259944.1|  lipoprotein, putative [Pseudomonas fluorescens Pf-5]
gi|68344504|gb|AAY92110.1|  lipoprotein, putative [Pseudomonas fluorescens Pf-5]
     Length=223
     Score =  246 bits (627),  Expect = 5e-64
     Identities = 113/213 (53%), Positives = 156/213 (73%), Gaps = 0/213 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12483




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16959




  
Author/Investigator(s):
        Jonathan Urbach





  
Title:
        PFAM alignment




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6327_pfam.html


    		




 
URL:

















    ReferenceID:29765




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6327
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198894
                           gb|AAN68753.1|AE016507_4
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           276
                           42.39
                           61.23
                           55
                           643.0
     

     
     
198899
                           gb|AAL20525.1|
                           (AE008770) putative outer membrane lipoprotein [Salmonella typhimurium LT2]
                           228
                           38.15
                           53.94
                           10
                           403.0
     

     
     
198895
                           gb|AAN80319.1|AE016760_178
                           (AE016760) Hypothetical lipoprotein ydcL precursor [Escherichia coli CFT073]
                           228
                           37.71
                           55.26
                           10
                           419.0
     

     
     
198896
                           gb|AAG56343.1|AE005362_13
                           (AE005362) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           228
                           37.71
                           55.26
                           10
                           419.0
     

     
     
198897
                           gb|AAC74513.1|
                           (AE000240) orf, hypothetical protein [Escherichia coli K12]
                           228
                           37.71
                           55.26
                           10
                           419.0
     

     






      

          
GC ORFID: 49329How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3180793Stop: 3180119

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAACGACTTCGAGTTGCCGTTTCCTGCGCGCTGCTGGCGGCGCTGGTGGGTTGTTCCAATGGTCAGGTC 
AAGCCGGAAAACTACTCGGGCTTCATCGGTGACTATTCGACGCTGGCGCCTGCCACCGCGCCTTCCGGAGCG 
CCGCTCCTGCGCTGGGTAGACCCGCAGGCGGACGTGCGGCGCTACCAGCGGATCTACATCGAGCCCAGCAGG 
TTCTATCCGGTCCCGAAACCGAACGACAAGGTTTCCGCGAAGACGCTTGCGGACATCACGACCTACTACGAT 
CAGGCATTGCGCCGTGAGCTGGGCAAGAGCCTGCCGCTGGCCAGCGCCCCCGGCCCGGGTATCCTGGTGCTG 
AAACCGGCGATCACCGCAGTTTCCAGCCATACCCAGGGTCTACGGCCATACGAGGTCATCCCCATCGCGCTG 
ATCGCTGCTGGGATGAGCACGGCGGTCGGGATTCGCGACCAGGATACCCAGATCGCCACCGAGGCCATGCTG 
CTCGACGGTGGGGACAACAAGGTATTGGCGAAGATGGTGCGCCAGGGCACCGGCAAGGCGCTGGACGATTCC 
GATCAGCCGATCACGGGAGACGATGTCAAGGCGGTGCTGGACGGTTGGGCGGCCGACATGCGCATGTCGTAC 
GAGAAGACTCTCGGTTCTCGTCGATGA