ViewGene
Locus Name:
GeneID:
Location:

GeneID:632
TrivialName: PA14_34600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34600
PAO1 Ortholog Locus:PA2323
Sequence Length:1626
Protein Length:541
Start: 3075288
Stop: 3073663
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05711.1|AE004658_5 (AE004658) probable glyceraldehyde-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 538/541 (99%), Positives = 539/541 (99%)
Sequence:
ATGACCGCCCCGCTCCACCTCGATTCGCTGTTTCCCAGCCTCGACACCATTCCCGAGCAGTACCGCCCCGAC
GCCCCCATCGAGCAGCGCGACTACCTGGTCGACGGCCAACTGCGACATTGGGACGGCCCGCTGGCGCCGGTA
CGCAGCCCGGTATTCCTCGCCGAGGCCGACGGCGAGCGCCAGGTGATCCTCGGCAGCACCCCGCTGCTCGAC
GCCGACGCCGCGCTCGCCGCGCTCGACGCCGCGGTGCGGGCCTACGACCACGGCCAGGGCCTGTGGCCGAAC
CTGCGGGTGGCCGAGCGCATCCAGCACGTCGAACGCTTCCTGGCGCGGATGCGCGAGCAACGCGAGGCGGTG
GTCAAGCTGCTGATGTGGGAAATCGGCAAGAACCTCAAGGACTCCGAGAAAGAGTTCGACCGCACCTGCGAC
TACATCGTCGATACCATCGAAGCGCTGAAGGAACTCGACCGCCGCTCCAGCCGTTTCGAGCTGGAACAGGGC
ACCCTCGGCCAGATCCGCCGGGTGCCGCTGGGCGTGGCGCTGTGCATGGGGCCGTACAACTACCCGCTGAAC
GAAACCTTCACCACCCTGATCCCGGCGCTGATCATGGGCAATACGGTGGTGTTCAAGCCGGCCAAGTTCGGC
GTGCTGCTGATCCGCCCGCTGCTGGAAGCCTTCCGCGACAGCTTCCCGCCGGGAGTGATCAACGTCATCTAC
GGACGCGGCCGGGAAACCGTGTCGGCGCTGATGGCCAGCGGCAAGGTCGACGTGTTCGCCTTCATCGGCACC
CATTCCGGCGCCAGCGACCTGAAGAAGCTGCACCCCCGCCCGCACCGCCTGCGCGCCGCCCTCGGCCTGGAC
GCGAAGAACCCGGGCATCGTCCTGCCGCAGGTCGACCTGGACAACGCGGTGAACGAGGCGGTCACCGGCGCG
CTGTCCTTCAACGGCCAGCGCTGCACCGCGCTGAAGATCCTGTTCGTCCACGAAAGCGTGCTGCAACCGTTC
CTCGACAAGTTCAGCGCGCGCCTGGCCAGCCTCAAGCCGGGCATGCCGTGGGAACCGGGAGTGGCGCTGACG
CCGCTGCCGGAGCCGGGCAAGGTCGACTACCTCGAAGGCCTGCTGAACGACGCCCTGGCCAAGGGCGCACGA
GTGGTCAATGCGGGCGGCGGCGAGCATCGGCAAAGTTTCTTCTACCCCGCTCTGCTGAGTCCGGTGAGCCCG
GACATGCGCCTCTACCACGAGGAGCAGTTCGGTCCGCTGGTGCCGGTGGTGCCCTATCGCGAGCTGGACGAG
GTGATCGACTACGTCCTGCGCTCCGACTACGGCCAGCAGTTGAGCCTGTTCGGCAACGACCCGGCGCAGATC
GGCCGGCTGGTCGACGCCTTCGCCAACCAGGTCGGCCGGATCAACGTCAACGCCCAGTGCCAGCGCGGCCCG
GACAGCTACCCGTTCAACGGCCGGAAGAATTCGGCGGAAGGCACCCTGTCGGTCCATGACGCGCTGCGGGTG
TTCTCCATCCGCACCCTGGTGGCGACCCGCGACACCGAGGCGAACAAGACCCTGGTCAGCGAGATCATCCGC
AACCGCGCGTCGAACTTCCTCACCACCGACTACATCTTCTGA
Translation:
MTAPLHLDSLFPSLDTIPEQYRPDAPIEQRDYLVDGQLRHWDGPLAPVRSPVFLAEADGERQVILGSTPLLD
ADAALAALDAAVRAYDHGQGLWPNLRVAERIQHVERFLARMREQREAVVKLLMWEIGKNLKDSEKEFDRTCD
YIVDTIEALKELDRRSSRFELEQGTLGQIRRVPLGVALCMGPYNYPLNETFTTLIPALIMGNTVVFKPAKFG
VLLIRPLLEAFRDSFPPGVINVIYGRGRETVSALMASGKVDVFAFIGTHSGASDLKKLHPRPHRLRAALGLD
AKNPGIVLPQVDLDNAVNEAVTGALSFNGQRCTALKILFVHESVLQPFLDKFSARLASLKPGMPWEPGVALT
PLPEPGKVDYLEGLLNDALAKGARVVNAGGGEHRQSFFYPALLSPVSPDMRLYHEEQFGPLVPVVPYRELDE
VIDYVLRSDYGQQLSLFGNDPAQIGRLVDAFANQVGRINVNAQCQRGPDSYPFNGRKNSAEGTLSVHDALRV
FSIRTLVATRDTEANKTLVSEIIRNRASNFLTTDYIF*
AnnotationID:641GeneID:632
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:50
Gene Name:
Confidence Code:3
GeneProduct:putative glyceraldehyde-3-phosphate dehydrogenase
Cell Localization:()
Synonyms:gapB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1012,pfam00171
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69045.1|AE016537_3 (AE016786) glyceraldehyde-3-phosphate dehydrogenase, putative
           [Pseudomonas putida KT2440]
          Length = 539

 Score =  921 bits (2380), Expect = 0.0
 Identities = 460/535 (85%), Positives = 487/535 (91%)








 
Structural Features:
COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  96.8% aligned
Score =  316 bits (812), Expect = 4e-87
Identities = 158/476 (33%), Positives = 236/476 (49%), Gaps = 21/476 (4%)

pfam00171, Aldedh, Aldehyde dehydrogenase family.
CD-Length = 464 residues,  91.4% aligned
Score =  258 bits (660), Expect = 2e-69
Identities = 139/441 (31%), Positives = 208/441 (47%), Gaps = 27/441 (6%)










   
Genomic Context:






   
Comment:


















    ReferenceID:1267




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18409




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32472




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:632_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:632
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1069
                           PA2323_tr
                           translation of PA2323
                           541
                           99.44
                           99.63
                           0
                           2781.0
     

     
     
41111
                           gb|AAG05711.1|AE004658_5
                           (AE004658) probable glyceraldehyde-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           541
                           99.44
                           99.63
                           0
                           2781.0
     

     
     
41112
                           gb|AAN69045.1|AE016537_3
                           (AE016786) glyceraldehyde-3-phosphate dehydrogenase, putative [Pseudomonas putida KT2440]
                           541
                           85.02
                           90.01
                           2
                           2373.0
     

     
     
41113
                           gb|AAR34148.1|
                           (AE017209) aldehyde dehydrogenase family protein [Geobacter sulfurreducens PCA]
                           541
                           60.44
                           74.86
                           0
                           1700.0
     

     






      

          
GC ORFID: 43634How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2323Glimmer Score: 

          
Start: 1878628Stop: 1880253

          
Length: 1626


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2323 translation of PA2323Homolog Bit Score 1075.0

          
Other Homologs:  t_PA2323 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCCCGCTCCACCTCGATTCGCTGTTTCCCAGCCTCGACACCATTCCCGAGCAGTACCGCCCCGAC 
GCCCCCATCGAGCAGCGCGACTACCTGGTCGACGGCCAACTGCGACATTGGGACGGCCCGCTGGCGCCGGTA 
CGCAGCCCGGTATTCCTCGCCGAGGCCGACGGCGAGCGCCAGGTGATCCTCGGCAGCACCCCGCTGCTCGAC 
GCCGACGCCGCGCTCGCCGCGCTCGACGCCGCGGTGCGGGCCTACGACCACGGCCAGGGCCTGTGGCCGAAC 
CTGCGGGTGGCCGAGCGCATCCAGCACGTCGAACGCTTCCTGGCGCGGATGCGCGAGCAACGCGAGGCGGTG 
GTCAAGCTGCTGATGTGGGAAATCGGCAAGAACCTCAAGGACTCCGAGAAAGAGTTCGACCGCACCTGCGAC 
TACATCGTCGATACCATCGAAGCGCTGAAGGAACTCGACCGCCGCTCCAGCCGTTTCGAGCTGGAACAGGGC 
ACCCTCGGCCAGATCCGCCGGGTGCCGCTGGGCGTGGCGCTGTGCATGGGGCCGTACAACTACCCGCTGAAC 
GAAACCTTCACCACCCTGATCCCGGCGCTGATCATGGGCAATACGGTGGTGTTCAAGCCGGCCAAGTTCGGC 
GTGCTGCTGATCCGCCCGCTGCTGGAAGCCTTCCGCGACAGCTTCCCGCCGGGAGTGATCAACGTCATCTAC 
GGACGCGGCCGGGAAACCGTGTCGGCGCTGATGGCCAGCGGCAAGGTCGACGTGTTCGCCTTCATCGGCACC 
CATTCCGGCGCCAGCGACCTGAAGAAGCTGCACCCCCGCCCGCACCGCCTGCGCGCCGCCCTCGGCCTGGAC 
GCGAAGAACCCGGGCATCGTCCTGCCGCAGGTCGACCTGGACAACGCGGTGAACGAGGCGGTCACCGGCGCG 
CTGTCCTTCAACGGCCAGCGCTGCACCGCGCTGAAGATCCTGTTCGTCCACGAAAGCGTGCTGCAACCGTTC 
CTCGACAAGTTCAGCGCGCGCCTGGCCAGCCTCAAGCCGGGCATGCCGTGGGAACCGGGAGTGGCGCTGACG 
CCGCTGCCGGAGCCGGGCAAGGTCGACTACCTCGAAGGCCTGCTGAACGACGCCCTGGCCAAGGGCGCACGA 
GTGGTCAATGCGGGCGGCGGCGAGCATCGGCAAAGTTTCTTCTACCCCGCTCTGCTGAGTCCGGTGAGCCCG 
GACATGCGCCTCTACCACGAGGAGCAGTTCGGTCCGCTGGTGCCGGTGGTGCCCTATCGCGAGCTGGACGAG 
GTGATCGACTACGTCCTGCGCTCCGACTACGGCCAGCAGTTGAGCCTGTTCGGCAACGACCCGGCGCAGATC 
GGCCGGCTGGTCGACGCCTTCGCCAACCAGGTCGGCCGGATCAACGTCAACGCCCAGTGCCAGCGCGGCCCG 
GACAGCTACCCGTTCAACGGCCGGAAGAATTCGGCGGAAGGCACCCTGTCGGTCCATGACGCGCTGCGGGTG 
TTCTCCATCCGCACCCTGGTGGCGACCCGCGACACCGAGGCGAACAAGACCCTGGTCAGCGAGATCATCCGC 
AACCGCGCGTCGAACTTCCTCACCACCGACTACATCTTCTGA