ViewGene
Locus Name:
GeneID:
Location:

GeneID:631
TrivialName: PA14_58890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58890
PAO1 Ortholog Locus:PA4540
Sequence Length:1638
Protein Length:545
Start: 5245268
Stop: 5246905
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07928.1|AE004867_14 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 539/545 (98%), Positives = 542/545 (99%)
Sequence:
ATGGGAATGGCCATGCTGTCGTCCTGCCTTGCCAGTGCCGCCCCGGATGCGGGGCAGGCGCTGCGTGACGTG
GAAAGCCGACGCCTGAACCTGCCCGCGCCGGTGGAACTGGACGCCGAGCGCCCCAGCCCCGAGGACGGCGTA
TCACGGGCTGCCGAAGAGGGCGGCCCGACGGTGCTGGTCAAGCGCTTCCAACTCAGCGGCAACAGGCAGCTC
GACGATCGACGCCTGCTGGCGCTCCTGCACGACCTGCCGGGCCAGGAACTCAATCTGAGCCAATTGCACGCC
GCCGCCGCCCGCATCGGCGATTTCTATCGGGAAAAGGGATATGTGCTGGCGCGCGCCTTCCTCCCGGCACAG
GAAATCCAGGATGGAACGGTACGCATCGAAGTGCTCGAGGGACGCTACGGCAGGATCGAACTGCACAACACG
TCCCGAACGCTGGACCGCGTTCTACTCCGCCCCTTGAGCGCACTCGAACGAGATACCGCGGTCCAGGGCTCC
GAGCTGGAGCGTGCGCTTCTGCTCCTGAGCGACATTCCCGGCCTCCAGGCCAAAGGCACCCTGCTGCCGGGC
CAGGCGCAGGGAACCACGGACTTGCGCGTCGAGGCCCGCCCCGGCCCGCTGGTCGGCGGCAGGCTGGAGGCA
GACAACTATGGCGGCCGCTACATGGGGGAATATCGCCTGGGAACCACCCTCGACTTCAACAGCCCGCTGCGA
CTGGGCGACCAGGCGAGACTGAGCCTGCTGGGCAGCGATCGGCACCAACGCTACTACCGTGCAGCCTATCAA
CTGCCCCTTGGTTCCCGAGGCACGCGCATCGGACTGGCCCACGCCGAGACGACCTATCGACTGGTACGCGAT
TTCTCGCGCCTGGACGCCCATGGCCGGGCCATTACCGACAGCCTGTTCGTCAGCCAGCCCCTGCTGCGTAGC
CGCAGCTTAAGCCTGTCCACCCAGTTGCAATATGAAAACAAGCGACTTCGCGATGACCAGGAGCGTACCGGG
AGGCATAGCCGCAAGGAGATCCGCCTGTGGACCGCCAGCATCAGCGGAAACGCCCAGGACCGCTTGTTCGGC
GGTGGACAGAGCGGCTTCTCGCTGGCCTATGCCCACGGCCAGCTCGCCATCGACTCCGCCGAAGAGCGGCTG
CTGGACCGCTACACCATCGGTACCGCCGGCAGCTTCGACAAGATCATGCTCAACGCCGTACGCCTGCAGCAC
CTGGGCGACCGCCTGCAGTTGTTCGCCCAACTCAACGCCCAGTGGAGCGGCGGCAACCTCGACAGCGCGGAA
CAGTTCGACATGGGCGGCCCCTACGGCGTTCGGGCGTTCCCCCTGGGCAGCTACAAGGGCTACGGCGACGAA
GGCTGGCAAGCCAGTGCGGAGCTGCGCTACAGCCTGGCTCCGGGCTGGCAGCTGAGTTCGTTCATCGACCAG
GGAGCGGTGAAATTCCTCAAGCACCCCAACACCAAGGAAGGCAATCGCAACCGCATGGCCGCCGTCGGCAGC
GGCGCAACCTGGTACGGAACGGATCACCAGGTCAGCCTGACCGCCGCCTGGCCCCTGAGCCAGGAAAACAAC
ATCGAGCCCGAGCGCACTCCCCGGCTGTGGCTGCAAGCGACCCGCTACTTCTGA
Translation:
MGMAMLSSCLASAAPDAGQALRDVESRRLNLPAPVELDAERPSPEDGVSRAAEEGGPTVLVKRFQLSGNRQL
DDRRLLALLHDLPGQELNLSQLHAAAARIGDFYREKGYVLARAFLPAQEIQDGTVRIEVLEGRYGRIELHNT
SRTLDRVLLRPLSALERDTAVQGSELERALLLLSDIPGLQAKGTLLPGQAQGTTDLRVEARPGPLVGGRLEA
DNYGGRYMGEYRLGTTLDFNSPLRLGDQARLSLLGSDRHQRYYRAAYQLPLGSRGTRIGLAHAETTYRLVRD
FSRLDAHGRAITDSLFVSQPLLRSRSLSLSTQLQYENKRLRDDQERTGRHSRKEIRLWTASISGNAQDRLFG
GGQSGFSLAYAHGQLAIDSAEERLLDRYTIGTAGSFDKIMLNAVRLQHLGDRLQLFAQLNAQWSGGNLDSAE
QFDMGGPYGVRAFPLGSYKGYGDEGWQASAELRYSLAPGWQLSSFIDQGAVKFLKHPNTKEGNRNRMAAVGS
GATWYGTDHQVSLTAAWPLSQENNIEPERTPRLWLQATRYF*
AnnotationID:640GeneID:631
AnnotatorUID: danlee
Modification Date/Time: 2005-08-24 13:01:58
Gene Name:
Confidence Code:3
GeneProduct:putative hemolysin activation/secretion protein
Cell Localization:()
Synonyms:PA4540
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2831
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD18596.1| (AL646084) PROBABLE ACTIVATION/SECRETION SIGNAL PEPTIDE PROTEIN
           [Ralstonia solanacearum]
          Length = 556

 Score =  284 bits (726), Expect = 1e-75
 Identities = 191/542 (35%), Positives = 271/542 (50%), Gaps = 9/542 (1%)







 
Structural Features:
COG2831, FhaC, Hemolysin activation/secretion protein 
[Intracellular trafficking and secretion]
CD-Length = 554 residues,  97.7% aligned
Score =  374 bits (962), Expect = 3e-104
Identities = 180/552 (32%), Positives = 258/552 (46%), Gaps = 19/552 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1265




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18407




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31581




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:631_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:631
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1068
                           PA4540_tr
                           translation of PA4540
                           545
                           98.89
                           99.44
                           0
                           2779.0
     

     
     
41110
                           gb|AAG07928.1|AE004867_14
                           (AE004867) hypothetical protein PA4540 [Pseudomonas aeruginosa PAO1]
                           545
                           98.89
                           99.44
                           0
                           2779.0
     

     






      

          
GC ORFID: 43633How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4540Glimmer Score: 

          
Start: 4508947Stop: 4510584

          
Length: 1638


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4540 translation of PA4540Homolog Bit Score 1075.0

          
Other Homologs:  t_PA4540 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGAATGGCCATGCTGTCGTCCTGCCTTGCCAGTGCCGCCCCGGATGCGGGGCAGGCGCTGCGTGACGTG 
GAAAGCCGACGCCTGAACCTGCCCGCGCCGGTGGAACTGGACGCCGAGCGCCCCAGCCCCGAGGACGGCGTA 
TCACGGGCTGCCGAAGAGGGCGGCCCGACGGTGCTGGTCAAGCGCTTCCAACTCAGCGGCAACAGGCAGCTC 
GACGATCGACGCCTGCTGGCGCTCCTGCACGACCTGCCGGGCCAGGAACTCAATCTGAGCCAATTGCACGCC 
GCCGCCGCCCGCATCGGCGATTTCTATCGGGAAAAGGGATATGTGCTGGCGCGCGCCTTCCTCCCGGCACAG 
GAAATCCAGGATGGAACGGTACGCATCGAAGTGCTCGAGGGACGCTACGGCAGGATCGAACTGCACAACACG 
TCCCGAACGCTGGACCGCGTTCTACTCCGCCCCTTGAGCGCACTCGAACGAGATACCGCGGTCCAGGGCTCC 
GAGCTGGAGCGTGCGCTTCTGCTCCTGAGCGACATTCCCGGCCTCCAGGCCAAAGGCACCCTGCTGCCGGGC 
CAGGCGCAGGGAACCACGGACTTGCGCGTCGAGGCCCGCCCCGGCCCGCTGGTCGGCGGCAGGCTGGAGGCA 
GACAACTATGGCGGCCGCTACATGGGGGAATATCGCCTGGGAACCACCCTCGACTTCAACAGCCCGCTGCGA 
CTGGGCGACCAGGCGAGACTGAGCCTGCTGGGCAGCGATCGGCACCAACGCTACTACCGTGCAGCCTATCAA 
CTGCCCCTTGGTTCCCGAGGCACGCGCATCGGACTGGCCCACGCCGAGACGACCTATCGACTGGTACGCGAT 
TTCTCGCGCCTGGACGCCCATGGCCGGGCCATTACCGACAGCCTGTTCGTCAGCCAGCCCCTGCTGCGTAGC 
CGCAGCTTAAGCCTGTCCACCCAGTTGCAATATGAAAACAAGCGACTTCGCGATGACCAGGAGCGTACCGGG 
AGGCATAGCCGCAAGGAGATCCGCCTGTGGACCGCCAGCATCAGCGGAAACGCCCAGGACCGCTTGTTCGGC 
GGTGGACAGAGCGGCTTCTCGCTGGCCTATGCCCACGGCCAGCTCGCCATCGACTCCGCCGAAGAGCGGCTG 
CTGGACCGCTACACCATCGGTACCGCCGGCAGCTTCGACAAGATCATGCTCAACGCCGTACGCCTGCAGCAC 
CTGGGCGACCGCCTGCAGTTGTTCGCCCAACTCAACGCCCAGTGGAGCGGCGGCAACCTCGACAGCGCGGAA 
CAGTTCGACATGGGCGGCCCCTACGGCGTTCGGGCGTTCCCCCTGGGCAGCTACAAGGGCTACGGCGACGAA 
GGCTGGCAAGCCAGTGCGGAGCTGCGCTACAGCCTGGCTCCGGGCTGGCAGCTGAGTTCGTTCATCGACCAG 
GGAGCGGTGAAATTCCTCAAGCACCCCAACACCAAGGAAGGCAATCGCAACCGCATGGCCGCCGTCGGCAGC 
GGCGCAACCTGGTACGGAACGGATCACCAGGTCAGCCTGACCGCCGCCTGGCCCCTGAGCCAGGAAAACAAC 
ATCGAGCCCGAGCGCACTCCCCGGCTGTGGCTGCAAGCGACCCGCTACTTCTGA