ViewGene
Locus Name:
GeneID:
Location:

GeneID:6305
TrivialName: PA14_21830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21830
PAO1 Ortholog Locus:
Sequence Length:432
Protein Length:143
Start: 1897888
Stop: 1898319
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN67336.1|AE016360_2 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 76/142 (53%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
Sequence:
ATGGATGCACCACGAGGATTCAGTCGTTACCTGGGGATCGCGGAACGTTTCCTGGCCCGTGGCCGGGTGCCC
GCCTTGTTGATTGCGGTAGCACGCAAGCGCTCGCGCCTGAAGCTGGTGAAGAGCGACCTGCGCCTGCTGCAG
GAACTGCTGGTGGCCTGGGTTCGCGGCGAATACCGCGGACTCAGCCGCCAGGCGTTGCTCTCGGTGATCGCG
GCGCTGGCCTATTTCCTTTCGCCGGTGGATATCGTCCCCGACTTCATCTTCGGTGTCGGCTTGCTCGACGAT
CTCGCCGTCCTGGCCTGGGTAGTGCGTCGCTGGCAGTCCGAGCTGGATGCCTTCAAGGTCTGGCGCGACGCC
CAGGCCGTCGAGACGCAGCAGGCGCTGCGAGAGCTGCCGGCTCCCAGGGCGGAGCGCGTTCAGGGTTCCTGA
Translation:
MDAPRGFSRYLGIAERFLARGRVPALLIAVARKRSRLKLVKSDLRLLQELLVAWVRGEYRGLSRQALLSVIA
ALAYFLSPVDIVPDFIFGVGLLDDLAVLAWVVRRWQSELDAFKVWRDAQAVETQQALRELPAPRAERVQGS*
AnnotationID:6306GeneID:6305
AnnotatorUID: diggins
Modification Date/Time: 2004-05-23 15:03:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12446




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29722




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32282




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6305_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6305
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198887
                           gb|AAN67336.1|AE016360_2
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           145
                           52.41
                           72.41
                           2
                           391.0
     

     
     
198888
                           gb|AAO57355.1|
                           (AE016870) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           150
                           44.66
                           61.33
                           24
                           323.0
     

     






      

          
GC ORFID: 49307How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3056043Stop: 3055612

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGATGCACCACGAGGATTCAGTCGTTACCTGGGGATCGCGGAACGTTTCCTGGCCCGTGGCCGGGTGCCC 
GCCTTGTTGATTGCGGTAGCACGCAAGCGCTCGCGCCTGAAGCTGGTGAAGAGCGACCTGCGCCTGCTGCAG 
GAACTGCTGGTGGCCTGGGTTCGCGGCGAATACCGCGGACTCAGCCGCCAGGCGTTGCTCTCGGTGATCGCG 
GCGCTGGCCTATTTCCTTTCGCCGGTGGATATCGTCCCCGACTTCATCTTCGGTGTCGGCTTGCTCGACGAT 
CTCGCCGTCCTGGCCTGGGTAGTGCGTCGCTGGCAGTCCGAGCTGGATGCCTTCAAGGTCTGGCGCGACGCC 
CAGGCCGTCGAGACGCAGCAGGCGCTGCGAGAGCTGCCGGCTCCCAGGGCGGAGCGCGTTCAGGGTTCCTGA