ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6301

TrivialName: PA14_22120

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_22120

PAO1 Ortholog Locus:

Sequence Length: 2325

Protein Length: 774

Start: 1931366

Stop: 1929042

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP16554.1| (AE016981) putative membrane protein [Shigella flexneri 2a str. 2457T] Identities = 77/368 (20%), Positives = 149/368 (40%), Gaps = 47/368 (12%)

Sequence:

ATGATCCAAGAAACTATTGCCCAGCTTACCGGGCATTTGAAGTTTGTTGTTGACTCCCGCCCACTGCGTGAA
TTCGAACGCAATCTAGCCAGAGTACAGACCAAGCTAAGCCAGTTTGCCAAGACTGCAAACCAGAAGATTCAA
TTCAAGCCCATGCTGAATGCCAATGTAATGGCCCAACAGAAGGGTGCATTTCAGCAACTAATGCAGCAAGCC
AAGCTTCAGCGCATCACTAACGATAACGCCCATCGTAGTGTTATGGCTAACATGAAACAGCAGCAACAGGCC
GCTATGGGTAATGCCAAGCTTCAGCTAGCTAATGCCCGCATTCAGCAGCAAGCCGCTATTGCTGGAGCCCGC
CTGACAGCAGCAACAGCAGCCGCTGAGCGTAGAGCCCAAGCTGCCCGTCTGACAATGAACCAACGTATTGCC
GCTGCTACTACCCGTCAACGCCGTCTAGATGAACTCCACGCCATCCGCGTACAGAGGGCTCAACTCGGCCTA
CAACGCGCTCAGGCAGCTTCTAGAGCCGGAGGCGGTGGGTTCGGTGGGGTCGGAGTCAATGCTGGTGCTATC
GCTTCCATGATGCCCGGTGGTGGGTTCTCTTCCCTGATCTCTGGTAGTGGTGCTGCCGCTGCTGGTCTGGGA
GCGCTGGCTGGTGCTACAGCAGGCGCAATCATCGGCCTCCGCATGCTGGCTACAGAAGCTCAGAAGGCTGGA
GACTGGCAGGCTCACGCATCCGCACAGATGAAGGTGTTTGATAGTCAAGCTGTCCAGCAGAACATGGAATGG
CTCTTCAATATCGCCAATGACCTAGGCGTCTCCGCCCGGGACACACAGCAAGGCGTAATGCGGGCTCTTATT
GGTATGCGTGATGGCGGCATGAGCACAAACGCAGCCAAGCAGTCTACATACGATGTAATGGCCTATGCCCGG
GCTTCCGGCCTAGACACAGCCACTGTAGACCTCGTATTCCGTGCGATGGGCCAGATGCTGTCGAAGGGTCAA
GTTTATAGTGAAGAGCTTAAGTCTCAGTTCGCCGAACATATGCCCGGAGCTATGAAGATTGCTGCTCAAGCT
TGGGCAGAACTAAACAACCTCCCAGCCGACGAAGGCTCTATGAAACGCCTTTCCAAGGATATGGAAGATGGG
AAGATCGCCGGGGCTATGGTGGCTCCATTCATTGAGCGCATGACCTCGATTATGGGTAGTCGTGCCAACGAT
GGAGGCCGCCTCGATATCATCCGGCAGAGCGGAGACGCAGCAATCGCCCGCCGTGAGAACGTAATGCAACAG
AACCTAGCCGGTGCATGGAACGCCAATGGCGGGGAACTGAAGAACGCTGTTCAAGAGTTCCAAGGTGCGGCG
GTTCCTCTTCTCCGTGAGCTTGGCCCTCTGCTAAAAGCTCTCGCTCCGTACAGTGCTGCTATCGTCAAGAGC
ACTACGGATATGGCCGTTTCTCTGGCTCAGTTCCTTCCGGGGATTACAGCCGGGATCGAAGGATTCTCCGAG
AACCCATACTTCAAACGAATCTCTGAGTCTATCGATAAGTATAACCAAGCTTTCGCCAGCTTCTTCGACGTA
GTTAAGCCAGTTCTAACCGGACCTGTTGCCGACCTTGCTAAGTTCCTGCTTGGTGGCGTTGTCGAGGTTATC
GCTAGACAACTGGAGTTCATTGGCACAGTAATCAACGTAGCTGCCCGGGCAATCGAATGGATTGCAAACAAG
ATGGGTGCAAACTTCCGCCCAGCCTCTCAACAGCGTTCCGCTGAAAAGGGAGCCGAGCAAGCCGCACGCAAC
ATGCCTTCTCTGGTTAAACGTCGCTGGACAGAAGAAGAGATTGATGCCTCCGCTTCGGAACAACAGCGTCGA
GTCCGCAGGAATCAGAATGCTTACTTTGATCAGTATGTGCAACAGATCGATAGAGAGGCTGCCGAACTCTTC
GCCCGTGGCGCTATGGGTCCAATGTCTGCTAATTCTTTCAATAAGCTAGACCCAATGGCTCGATACGAAGCT
GTATCGGCTGCTAAGGGCCGTGAGCTTGCCTCTGGTGTTACTTCTGCTCCATCCGGCTACCTAGATAGTCAG
AAGATGCTAGACACAATCAAGAGCGTTAACGACAGCACAGTTCAGGCTATCAAACAGGCTGGCATTGATAGT
GCCGCAGCAATGCGGGAAGCCACCGAAGCTATGAGTCATCCACAAGCTCCAGTCACATTCAATATCCACGGT
GCAACTGACCCACACGAAGTAGCACGGGAAGTTAACCGCACTTTGGATGAACGTCAACGTAGGGAAGAAGCC
GCAGCCGGGCAAGGATTCTAA

Translation:

MIQETIAQLTGHLKFVVDSRPLREFERNLARVQTKLSQFAKTANQKIQFKPMLNANVMAQQKGAFQQLMQQA
KLQRITNDNAHRSVMANMKQQQQAAMGNAKLQLANARIQQQAAIAGARLTAATAAAERRAQAARLTMNQRIA
AATTRQRRLDELHAIRVQRAQLGLQRAQAASRAGGGGFGGVGVNAGAIASMMPGGGFSSLISGSGAAAAGLG
ALAGATAGAIIGLRMLATEAQKAGDWQAHASAQMKVFDSQAVQQNMEWLFNIANDLGVSARDTQQGVMRALI
GMRDGGMSTNAAKQSTYDVMAYARASGLDTATVDLVFRAMGQMLSKGQVYSEELKSQFAEHMPGAMKIAAQA
WAELNNLPADEGSMKRLSKDMEDGKIAGAMVAPFIERMTSIMGSRANDGGRLDIIRQSGDAAIARRENVMQQ
NLAGAWNANGGELKNAVQEFQGAAVPLLRELGPLLKALAPYSAAIVKSTTDMAVSLAQFLPGITAGIEGFSE
NPYFKRISESIDKYNQAFASFFDVVKPVLTGPVADLAKFLLGGVVEVIARQLEFIGTVINVAARAIEWIANK
MGANFRPASQQRSAEKGAEQAARNMPSLVKRRWTEEEIDASASEQQRRVRRNQNAYFDQYVQQIDREAAELF
ARGAMGPMSANSFNKLDPMARYEAVSAAKGRELASGVTSAPSGYLDSQKMLDTIKSVNDSTVQAIKQAGIDS
AAAMREATEAMSHPQAPVTFNIHGATDPHEVAREVNRTLDERQRREEAAAGQGF*

AnnotationID:6302 GeneID:6301

AnnotatorUID: danlee

Modification Date/Time: 2005-10-17 11:11:12

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|77459718|ref|YP_349225.1|  hypothetical protein Pfl_3496 [Pseudomonas fluorescens PfO-1]
gi|77383721|gb|ABA75234.1|  hypothetical protein Pfl_3496 [Pseudomonas fluorescens PfO-1]
     Length=790
     Score =  159 bits (401),  Expect = 5e-37
     Identities = 163/621 (26%), Positives = 268/621 (43%), Gaps = 69/621 (11%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:12439

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16960

Author/Investigator(s): Jonathan Urbach

Title: PFAM search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6301_pfam.html

URL:

ReferenceID:29714

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49303`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3022565`	Stop: `3024889`
Length: `2325`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGATCCAAGAAACTATTGCCCAGCTTACCGGGCATTTGAAGTTTGTTGTTGACTCCCGCCCACTGCGTGAA TTCGAACGCAATCTAGCCAGAGTACAGACCAAGCTAAGCCAGTTTGCCAAGACTGCAAACCAGAAGATTCAA TTCAAGCCCATGCTGAATGCCAATGTAATGGCCCAACAGAAGGGTGCATTTCAGCAACTAATGCAGCAAGCC AAGCTTCAGCGCATCACTAACGATAACGCCCATCGTAGTGTTATGGCTAACATGAAACAGCAGCAACAGGCC GCTATGGGTAATGCCAAGCTTCAGCTAGCTAATGCCCGCATTCAGCAGCAAGCCGCTATTGCTGGAGCCCGC CTGACAGCAGCAACAGCAGCCGCTGAGCGTAGAGCCCAAGCTGCCCGTCTGACAATGAACCAACGTATTGCC GCTGCTACTACCCGTCAACGCCGTCTAGATGAACTCCACGCCATCCGCGTACAGAGGGCTCAACTCGGCCTA CAACGCGCTCAGGCAGCTTCTAGAGCCGGAGGCGGTGGGTTCGGTGGGGTCGGAGTCAATGCTGGTGCTATC GCTTCCATGATGCCCGGTGGTGGGTTCTCTTCCCTGATCTCTGGTAGTGGTGCTGCCGCTGCTGGTCTGGGA GCGCTGGCTGGTGCTACAGCAGGCGCAATCATCGGCCTCCGCATGCTGGCTACAGAAGCTCAGAAGGCTGGA GACTGGCAGGCTCACGCATCCGCACAGATGAAGGTGTTTGATAGTCAAGCTGTCCAGCAGAACATGGAATGG CTCTTCAATATCGCCAATGACCTAGGCGTCTCCGCCCGGGACACACAGCAAGGCGTAATGCGGGCTCTTATT GGTATGCGTGATGGCGGCATGAGCACAAACGCAGCCAAGCAGTCTACATACGATGTAATGGCCTATGCCCGG GCTTCCGGCCTAGACACAGCCACTGTAGACCTCGTATTCCGTGCGATGGGCCAGATGCTGTCGAAGGGTCAA GTTTATAGTGAAGAGCTTAAGTCTCAGTTCGCCGAACATATGCCCGGAGCTATGAAGATTGCTGCTCAAGCT TGGGCAGAACTAAACAACCTCCCAGCCGACGAAGGCTCTATGAAACGCCTTTCCAAGGATATGGAAGATGGG AAGATCGCCGGGGCTATGGTGGCTCCATTCATTGAGCGCATGACCTCGATTATGGGTAGTCGTGCCAACGAT GGAGGCCGCCTCGATATCATCCGGCAGAGCGGAGACGCAGCAATCGCCCGCCGTGAGAACGTAATGCAACAG AACCTAGCCGGTGCATGGAACGCCAATGGCGGGGAACTGAAGAACGCTGTTCAAGAGTTCCAAGGTGCGGCG GTTCCTCTTCTCCGTGAGCTTGGCCCTCTGCTAAAAGCTCTCGCTCCGTACAGTGCTGCTATCGTCAAGAGC ACTACGGATATGGCCGTTTCTCTGGCTCAGTTCCTTCCGGGGATTACAGCCGGGATCGAAGGATTCTCCGAG AACCCATACTTCAAACGAATCTCTGAGTCTATCGATAAGTATAACCAAGCTTTCGCCAGCTTCTTCGACGTA GTTAAGCCAGTTCTAACCGGACCTGTTGCCGACCTTGCTAAGTTCCTGCTTGGTGGCGTTGTCGAGGTTATC GCTAGACAACTGGAGTTCATTGGCACAGTAATCAACGTAGCTGCCCGGGCAATCGAATGGATTGCAAACAAG ATGGGTGCAAACTTCCGCCCAGCCTCTCAACAGCGTTCCGCTGAAAAGGGAGCCGAGCAAGCCGCACGCAAC ATGCCTTCTCTGGTTAAACGTCGCTGGACAGAAGAAGAGATTGATGCCTCCGCTTCGGAACAACAGCGTCGA GTCCGCAGGAATCAGAATGCTTACTTTGATCAGTATGTGCAACAGATCGATAGAGAGGCTGCCGAACTCTTC GCCCGTGGCGCTATGGGTCCAATGTCTGCTAATTCTTTCAATAAGCTAGACCCAATGGCTCGATACGAAGCT GTATCGGCTGCTAAGGGCCGTGAGCTTGCCTCTGGTGTTACTTCTGCTCCATCCGGCTACCTAGATAGTCAG AAGATGCTAGACACAATCAAGAGCGTTAACGACAGCACAGTTCAGGCTATCAAACAGGCTGGCATTGATAGT GCCGCAGCAATGCGGGAAGCCACCGAAGCTATGAGTCATCCACAAGCTCCAGTCACATTCAATATCCACGGT GCAACTGACCCACACGAAGTAGCACGGGAAGTTAACCGCACTTTGGATGAACGTCAACGTAGGGAAGAAGCC GCAGCCGGGCAAGGATTCTAA