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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05406.1|AE004628_4 (AE004628) RND multidrug efflux transporter [Pseudomonas aeruginosa PAO1]
Identities = 1035/1045 (99%), Positives = 1040/1045 (99%)
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Sequence:
ATGGCTCGTTTCTTCATTGACCGGCCGGTCTTCGCCTGGGTGATCTCCCTGCTGATCGTGCTCGCCGGGGTC
CTGGCGATCCGCTTCCTGCCGGTCGCCCAGTACCCGGACATCGCGCCGCCGGTGGTCAACGTCAGCGCCAGC
TATCCCGGCGCCTCGGCcAaggTGGTCGAGGAAGCGGTGACCGCGATCATCGAGCGCGAGATGAACGGCGCG
CCCGGCCTGCTCTACACCAagGcCACCAGCAGCACCGGCcagGCTTCGCTGACCCTGACCTTCCGCCAGGGC
GTGAACGCCGACCTCGCCGCGGTGGAAGTGCAGAACCGCCTGAAGATCGTCGAGTCGCGCCTGCCCGAGTCG
GTGCGGCGCGACGGTATCTACGTGGAgaaagcGGCGGACAGCATCCAGCTGATCGTCACCCTCACCTCCTCC
AGCGGCCGCTACGACGCCATGGAACTGGGCGAGATCgCCTCGTcCAACGTGTTGCAGGCGCTGCGCCGGGTG
GAGGGCGTGGGCAAGGTccagacctgggGCGCCGAGTACGCCATGCGCATCTGGCCCGACCCGGCCAAGCTG
ACCTCGATGAACCTCAGCGCCAGCGACCTGGTCAACGCCGTGCGCCGGCACAACGCCCGCCTCACCGTGGGC
GACATCGGCAACCTCGGGGTCCCCGACTCGGCGCCGATCAGCGCCACGGTGAAGGTCGACGACACCCTGGTG
ACGCCCGAGCAGTTCGGCGAGATTCCGCTGCGCATCCGCGCCGACGGCGGCGCGATCCGCCTGCGCGACGTG
GCCCGCGTCGAGTTCGGCCAAAGCGAGTACGGCTTCGTCTCGCGGGTCAACCAGATGACCGCCACCGGCCTG
GCGGTGAAGATGGCGCCCGGCTCCAACGCAGTGGCCACCGCCAAGCGCATCCGCGCCACCCTCGACGAGCTG
TCGCGCTACTTCCCGGAGGGCGTGAGCTACAACATCCCCTACGACACCTCGGCGTTCGTCGAGATCTCGATC
AGGAAGGTGGTCAGCACCCTGCTCGAGGCGATGCTGCTGGTGTTCGCCGTGATGTACCTGTTCATGCAGAAC
TTCCGCGCCACCCTGATCCCGACGCTGGTGGTGCCGGTGGCCCTGCTCGGCACCTTCACGGTGATGCTCGGC
CTGGGCTTCTCGATcAacGTGCTGACCATGTtcggcATGGTCCTGGCGATCGGCATCCTGGTGGAcgacgcG
ATCAtcgTggtggagaacgtcgagcggctgatggcccaagaagGCctgtcgcCgcacgACacCaCGGTCAAG
GcGATGCGCcaaaTCAGCGGGGCCATCGTCGGCATCACCGTGGTGCTGGTCTCGGTATTCGTGCCGATGGCG
TTCTTCAGCGGCGCGGTGGGCAACATCTACCGCCAGTTCGCGGTGACCCTGGCGGTCTCCATCGGCTTCTCG
GCGTTCCTCGCGCTGTCGCTGACCCCGGCCCTGTGCGCCACCCTGCTGCGCCCGATCGACGCCGACCACCAT
GAGAAGCGCGGCTTCTTCGGCTGGTTCAACCGCGCCTTCCTGCGCCTGACCGGACGCTACCGCAACGCGGTG
GCCGGCATCCTCGCCCGGCCGGTCCGCTGGATGCTGGTCTACGCCCTGGTCATCGGCGTGGTCGCCCTGCTC
TTCGTGCGCCTGCCGCAGGCGTTCCTGCCGGAAGAGGACCAGGGCGACTTCATGATCATGGTGATGCAGCCC
GAAGGCACGCCGATGGCGGAGACCATGGCCAACGTCGCCGATGTAGAGCGCTACCTGGCGGAGCACGAACCG
GTGGCCTACGCCTATGCGGTCGGCGGCTTCAGCCTGTACGGCGACGGCACCAGCTCGGCGATGATCTTCGCC
ACCCTGAAGGACTGGTCGGAACGCCGGGAGGCCAGCCAGCACGTCGGCGCCATCGTCGAGCGCATCAACCAG
CGCTTCGCCGGCCTGCCCAACCGTACGGTGTATGCGATGAACTCGCCGCCGCTGCCGGACCTGGGTTCCACC
AGCGGCTTCGACTTCCGCCTGCAGGACCGTGGCGGGGTCGGCTACGAGGCCCTGGTCAAGGCCCGCGACCAG
TTGCTGGCGCGCGCCGCCGAGGACCCGCGCCTGGCCAACGTGATGTTCGCCGGCCAGGGCGAGGCGCCGCAG
ATCCGCCTGGACATCGACCGGCGCAAGGCGGAGACCCTCGGCGTGAGCATGGACGAGATCAACACCACCCTG
GCGGTGATGTTCGGCTCGGACTACATCGGCGACTTCATGCACGGCAGCCAGGTGCGCAAGGTGGTGGTCCAG
GCCGACGGCGCCAAGCGCCTGGGCATCGACGACATCGGCCGGCTTCACGTGCGCAACGAGCAGGGCGAGATG
GTCCCGCTGGCGACGTTCGCCAAGGCCGCCTGGACCCTCGGCCCGCCGCAACTGACCCGCTACAACGGCTAT
CCCTCGTTCAACCTCGAGGGCCAGGCCGCACCGGGCTACAGCAGCGGCGAAGCCATGCAGGCGATGGAGGAA
TTGATGCAGGGCCTGCCCGAGGGCATCGCCCACGAGTGGTCCGGCCAGTCCTTCGAAGAACGCCTGTCCGGC
GCCCAGGCGCCGGCGCTGTTCGCCCTCTCGGTGCTGATCGTGTTCCTCGCCCTGGCCGCCCTCTACGAAAGC
TGGTCGATCCCGCTGGCGGTGATCCTGGTGGTGCCGCTGGGCGTGCTCGGCGCACTGCACGGGGTGAGCCTG
CGCGGCCTGCCCAACGACATCTACTTCAAGGTCGGCCTGATCACCATCATCGGCCTCTCGGCGAAGAACGCC
ATCCTCATCATCGAGGTAGCCAAGGACCATTACCAGGAAGGCATGAGCCTGCTGCAGGCGACCCTGGAGGCC
GCGCGCCTGCGCCTGCGACCGATCGTCATGACCTCGCTGGCGTTCGGTTTCGGCGTGGTCCCGCTGGCGCTC
TCCAGCGGCGCCGGTTCCGGCGCCCAGGTCGCCATCGGCACCGGGGTGCTCGGCGGGATCGTCACCGCCACG
GTACTCGCGGTGTTCCTGGTACCGCTGTTCTTCCTGGTGGTCGGGCGCCTGTTCCGGTTACGCAAGGCGCCG
CGCACCGGCACCTCGCCCCGGATCCCGACGGAGCAAGCCTGA |
Translation:
MARFFIDRPVFAWVISLLIVLAGVLAIRFLPVAQYPDIAPPVVNVSASYPGASAKVVEEAVTAIIEREMNGA
PGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIVESRLPESVRRDGIYVEKAADSIQLIVTLTSS
SGRYDAMELGEIASSNVLQALRRVEGVGKVQTWGAEYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVG
DIGNLGVPDSAPISATVKVDDTLVTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSRVNQMTATGL
AVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQN
FRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVLAIGILVDDAIIVVENVERLMAQEGLSPHDTTVK
AMRQISGAIVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHH
EKRGFFGWFNRAFLRLTGRYRNAVAGILARPVRWMLVYALVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQP
EGTPMAETMANVADVERYLAEHEPVAYAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQHVGAIVERINQ
RFAGLPNRTVYAMNSPPLPDLGSTSGFDFRLQDRGGVGYEALVKARDQLLARAAEDPRLANVMFAGQGEAPQ
IRLDIDRRKAETLGVSMDEINTTLAVMFGSDYIGDFMHGSQVRKVVVQADGAKRLGIDDIGRLHVRNEQGEM
VPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAMQAMEELMQGLPEGIAHEWSGQSFEERLSG
AQAPALFALSVLIVFLALAALYESWSIPLAVILVVPLGVLGALHGVSLRGLPNDIYFKVGLITIIGLSAKNA
ILIIEVAKDHYQEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTAT
VLAVFLVPLFFLVVGRLFRLRKAPRTGTSPRIPTEQA* |
AnnotationID:73 | GeneID:63 |
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Modification Date/Time: |
2005-03-02 20:08:43 |
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GeneProduct: | RND multidrug efflux transporter |
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Cell Localization Confidence Code: | 5 |
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MolecularFunction: | transmembrane efflux pump protein |
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Functional Category: | (3) Antibiotic resistance and susceptibility |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transport of small molecules |
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Homology: | >emb|CAD85023.1| (BX321859) RND multidrug efflux transporter [Nitrosomonas europaea
ATCC 19718]
Length = 1033
Score = 1465 bits (3792), Expect = 0.0
Identities = 736/1028 (71%), Positives = 865/1028 (84%), Gaps = 1/1028 (0%)
>gb|AAC27754.1| (AF072887) putative transporter AmrB [Burkholderia pseudomallei]
Length = 1043
Score = 1451 bits (3755), Expect = 0.0
Identities = 724/1026 (70%), Positives = 853/1026 (83%)
>gb|AAL44018.1| (AE009250) RND multidrug efflux transporter [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 1044
Score = 1094 bits (2829), Expect = 0.0
Identities = 556/1031 (53%), Positives = 739/1031 (71%), Gaps = 2/1031 (0%) |
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Structural Features: | pfam00873, ACR_tran, AcrB/AcrD/AcrF family.
CD-Length = 1017 residues, 99.9% aligned
Score = 1053 bits (2724), Expect = 0.0
Identities = 480/1026 (46%), Positives = 668/1026 (65%), Gaps = 14/1026 (1%)
COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]
CD-Length = 1009 residues, 99.9% aligned
Score = 994 bits (2571), Expect = 0.0
Identities = 524/1030 (50%), Positives = 711/1030 (69%), Gaps = 27/1030 (2%)
COG3696, COG3696, Putative silver efflux pump
[Inorganic ion transport and metabolism
CD-Length = 1027 residues, 99.6% aligned
Score = 452 bits (1164), Expect = 1e-127
Identities = 281/1067 (26%), Positives = 496/1067 (46%), Gaps = 79/1067 (7%) |
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GC ORFID: 43065 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA2018 | Glimmer Score: |
Start: 1531019 | Stop: 1527882 |
Length: 3138 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA2018 translation of PA2018 | Homolog Bit Score 1994.0 |
Other Homologs: t_PA4598 (ORF: BLASTX 1052.0), t_PA0426 (ORF: BLASTX 1013.0), psyr_15may02_Scaffold5_revised_gene6178 (ORF: BLASTX 983.0), t_PA2494 (ORF: BLASTX 800.0), psyr_15may02_Scaffold7_revised_gene7199 (ORF: BLASTX 798.0), t_PA3522 (ORF: BLASTX 749.0), psyr_15may02_Scaffold7_revised_gene7337 (ORF: BLASTX 127.0), t_PA2018 (ORF: GLIMMER) |
GC ORF Sequence |
ATGGCTCGTTTCTTCATTGACCGGCCGGTCTTCGCCTGGGTGATCTCCCTGCTGATCGTGCTCGCCGGGGTC CTGGCGATCCGCTTCCTGCCGGTCGCCCAGTACCCGGACATCGCGCCGCCGGTGGTCAACGTCAGCGCCAGC TATCCCGGCGCCTCGGCcAaggTGGTCGAGGAAGCGGTGACCGCGATCATCGAGCGCGAGATGAACGGCGCG CCCGGCCTGCTCTACACCAagGcCACCAGCAGCACCGGCcagGCTTCGCTGACCCTGACCTTCCGCCAGGGC GTGAACGCCGACCTCGCCGCGGTGGAAGTGCAGAACCGCCTGAAGATCGTCGAGTCGCGCCTGCCCGAGTCG GTGCGGCGCGACGGTATCTACGTGGAgaaagcGGCGGACAGCATCCAGCTGATCGTCACCCTCACCTCCTCC AGCGGCCGCTACGACGCCATGGAACTGGGCGAGATCgCCTCGTcCAACGTGTTGCAGGCGCTGCGCCGGGTG GAGGGCGTGGGCAAGGTccagacctgggGCGCCGAGTACGCCATGCGCATCTGGCCCGACCCGGCCAAGCTG ACCTCGATGAACCTCAGCGCCAGCGACCTGGTCAACGCCGTGCGCCGGCACAACGCCCGCCTCACCGTGGGC GACATCGGCAACCTCGGGGTCCCCGACTCGGCGCCGATCAGCGCCACGGTGAAGGTCGACGACACCCTGGTG ACGCCCGAGCAGTTCGGCGAGATTCCGCTGCGCATCCGCGCCGACGGCGGCGCGATCCGCCTGCGCGACGTG GCCCGCGTCGAGTTCGGCCAAAGCGAGTACGGCTTCGTCTCGCGGGTCAACCAGATGACCGCCACCGGCCTG GCGGTGAAGATGGCGCCCGGCTCCAACGCAGTGGCCACCGCCAAGCGCATCCGCGCCACCCTCGACGAGCTG TCGCGCTACTTCCCGGAGGGCGTGAGCTACAACATCCCCTACGACACCTCGGCGTTCGTCGAGATCTCGATC AGGAAGGTGGTCAGCACCCTGCTCGAGGCGATGCTGCTGGTGTTCGCCGTGATGTACCTGTTCATGCAGAAC TTCCGCGCCACCCTGATCCCGACGCTGGTGGTGCCGGTGGCCCTGCTCGGCACCTTCACGGTGATGCTCGGC CTGGGCTTCTCGATcAacGTGCTGACCATGTtcggcATGGTCCTGGCGATCGGCATCCTGGTGGAcgacgcG ATCAtcgTggtggagaacgtcgagcggctgatggcccaagaagGCctgtcgcCgcacgACacCaCGGTCAAG GcGATGCGCcaaaTCAGCGGGGCCATCGTCGGCATCACCGTGGTGCTGGTCTCGGTATTCGTGCCGATGGCG TTCTTCAGCGGCGCGGTGGGCAACATCTACCGCCAGTTCGCGGTGACCCTGGCGGTCTCCATCGGCTTCTCG GCGTTCCTCGCGCTGTCGCTGACCCCGGCCCTGTGCGCCACCCTGCTGCGCCCGATCGACGCCGACCACCAT GAGAAGCGCGGCTTCTTCGGCTGGTTCAACCGCGCCTTCCTGCGCCTGACCGGACGCTACCGCAACGCGGTG GCCGGCATCCTCGCCCGGCCGGTCCGCTGGATGCTGGTCTACGCCCTGGTCATCGGCGTGGTCGCCCTGCTC TTCGTGCGCCTGCCGCAGGCGTTCCTGCCGGAAGAGGACCAGGGCGACTTCATGATCATGGTGATGCAGCCC GAAGGCACGCCGATGGCGGAGACCATGGCCAACGTCGCCGATGTAGAGCGCTACCTGGCGGAGCACGAACCG GTGGCCTACGCCTATGCGGTCGGCGGCTTCAGCCTGTACGGCGACGGCACCAGCTCGGCGATGATCTTCGCC ACCCTGAAGGACTGGTCGGAACGCCGGGAGGCCAGCCAGCACGTCGGCGCCATCGTCGAGCGCATCAACCAG CGCTTCGCCGGCCTGCCCAACCGTACGGTGTATGCGATGAACTCGCCGCCGCTGCCGGACCTGGGTTCCACC AGCGGCTTCGACTTCCGCCTGCAGGACCGTGGCGGGGTCGGCTACGAGGCCCTGGTCAAGGCCCGCGACCAG TTGCTGGCGCGCGCCGCCGAGGACCCGCGCCTGGCCAACGTGATGTTCGCCGGCCAGGGCGAGGCGCCGCAG ATCCGCCTGGACATCGACCGGCGCAAGGCGGAGACCCTCGGCGTGAGCATGGACGAGATCAACACCACCCTG GCGGTGATGTTCGGCTCGGACTACATCGGCGACTTCATGCACGGCAGCCAGGTGCGCAAGGTGGTGGTCCAG GCCGACGGCGCCAAGCGCCTGGGCATCGACGACATCGGCCGGCTTCACGTGCGCAACGAGCAGGGCGAGATG GTCCCGCTGGCGACGTTCGCCAAGGCCGCCTGGACCCTCGGCCCGCCGCAACTGACCCGCTACAACGGCTAT CCCTCGTTCAACCTCGAGGGCCAGGCCGCACCGGGCTACAGCAGCGGCGAAGCCATGCAGGCGATGGAGGAA TTGATGCAGGGCCTGCCCGAGGGCATCGCCCACGAGTGGTCCGGCCAGTCCTTCGAAGAACGCCTGTCCGGC GCCCAGGCGCCGGCGCTGTTCGCCCTCTCGGTGCTGATCGTGTTCCTCGCCCTGGCCGCCCTCTACGAAAGC TGGTCGATCCCGCTGGCGGTGATCCTGGTGGTGCCGCTGGGCGTGCTCGGCGCACTGCACGGGGTGAGCCTG CGCGGCCTGCCCAACGACATCTACTTCAAGGTCGGCCTGATCACCATCATCGGCCTCTCGGCGAAGAACGCC ATCCTCATCATCGAGGTAGCCAAGGACCATTACCAGGAAGGCATGAGCCTGCTGCAGGCGACCCTGGAGGCC GCGCGCCTGCGCCTGCGACCGATCGTCATGACCTCGCTGGCGTTCGGTTTCGGCGTGGTCCCGCTGGCGCTC TCCAGCGGCGCCGGTTCCGGCGCCCAGGTCGCCATCGGCACCGGGGTGCTCGGCGGGATCGTCACCGCCACG GTACTCGCGGTGTTCCTGGTACCGCTGTTCTTCCTGGTGGTCGGGCGCCTGTTCCGGTTACGCAAGGCGCCG CGCACCGGCACCTCGCCCCGGATCCCGACGGAGCAAGCCTGA |
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