ViewGene
Locus Name:
GeneID:
Location:

GeneID:6298
TrivialName: PA14_22270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22270
PAO1 Ortholog Locus:
Sequence Length:1578
Protein Length:525
Start: 1941291
Stop: 1939714
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO55831.1| (AE016864) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 217/482 (45%), Positives = 295/482 (61%), Gaps = 17/482 (3%)
Sequence:
ATGCCTTCTGCTTTCTCTTATGTGCGGTTCTCCTCTGGCAAGCAAGCCAAGGGATCGTCTGAACACCGACAG
CGAGCAATGCTCGGCCAGTGGCTGGAGCAACACCCTTCCTTCACTCTCTCCGATCTCCGATTCGAAGACTTA
GGCCGTTCCGGCTTCTCTGGTGAGCATCTCGACCACGGCCTAGGGCAACTCCTTGCCGCCATCGATAGCGGA
GCTATCAAGAGCGGGGATGTGATTCTGGTTGAGGCTGTAGACCGGATAGGTCGCCTTGAGCCTCTGGAAATG
CTCCCCCTCTTCTCCCGGATCGTGAAGGCTGGAGTATCTGTAATCACCCTCGAAGACGGCCACGTCTACGAT
AGAAGCTCTGTCAACGAAACGTCTCTGTTCCTGCTGGTAGCCAAGATTCAGCAAGCCCACGAATACAGTAAC
CGCCTCAGCAGGCGCATAAACGCCTCCTATACAGCCCGCAGGGAGAAAGCTAAGGCAGGGTTAGGGATCAAG
CGAGAAACGCCCGTATGGCTCACTACGGACGGTCAGTTAGTGCCTCACGTCGCCCCGCACATCGCCCAAGCC
TTCCAAGACTATGCCGATGGCCTAGGAGAGCGCCGCATCTGTCGCAAGCTTCGCGAATCTGGCCTTGAGGAG
TTCAGCAAGACCAACGCCACCACTGTCCGCCGCTGGCTCAAGAACAAGACTGCTATTGGCTACTGGAACGAT
ATTCCAGATGTTTACCCGCACGTTGTAGACCCAGCCCTTTTCTACCGAGTGCAACAGCGCCTAGACGCTCCG
AAGGTAGACAGAGCCAAGCCTTCCGCCCATTACCTCACAGGCTTAGTGAAGTGTGCGGTATGTGGTCGTAAC
TACAACTACAAACAACGCAAGCACACAGACCCGGCCATGCTCTGCACTTCCCGGGCTCGCCTAGCTGGAGAA
GGCTGTTCCAACTCCAAAACCTACCCTGTGATTGTTCTCGATCAGGTGCGGAAGCTTACAAGCCTCCCTTTC
CTACAGCATGCAATGGAGAGCGCAAGCTCTCAGGCGGACCCATCCTCACAGCGCCTAGCTGTAATCGATGGA
GAGATTGGGGAGCTTTCCCGGAAAATCGGCGAAGCCACTAAAGCACTCCTTGCGCTTGGATTCACGCCGGAG
ATTCAGGAAAGCTTAGAGCAGCTTAAAACAGCCCGTGAAGCATTGGAAGAGGAAAGGGCTACCTTACTACTC
CCTCAAGCTGAAAAGCTCACAGCGGCTCAATTAGAGGCCTTCTCTAACGGCCTACTCGACGATGAACCAATG
AAGCTCAACCACGTCTTGCAAACTGCCGGCTACTCCATGGTTGTTCACCCGGACGGGTCTATTGACGTAGAT
GGGAAGAGGTTTGTTTACGAAGGAGCCAACAGGAAGAAGAAAGTCTACAAGCTCCGCCTCCTTGGCGAGGAT
AGGCAATGGGAACTCCCCATCCTCTCCCCAGAGCAAGCAGCCAGCCTTGCCCGCTCCGTGGACGGAGGATAC
CTCCCCCCGAATTCCAGCGAGGAGATAGCCCGCTACTATGAGAAGGTGAAACACCTAGTTCGGTAA
Translation:
MPSAFSYVRFSSGKQAKGSSEHRQRAMLGQWLEQHPSFTLSDLRFEDLGRSGFSGEHLDHGLGQLLAAIDSG
AIKSGDVILVEAVDRIGRLEPLEMLPLFSRIVKAGVSVITLEDGHVYDRSSVNETSLFLLVAKIQQAHEYSN
RLSRRINASYTARREKAKAGLGIKRETPVWLTTDGQLVPHVAPHIAQAFQDYADGLGERRICRKLRESGLEE
FSKTNATTVRRWLKNKTAIGYWNDIPDVYPHVVDPALFYRVQQRLDAPKVDRAKPSAHYLTGLVKCAVCGRN
YNYKQRKHTDPAMLCTSRARLAGEGCSNSKTYPVIVLDQVRKLTSLPFLQHAMESASSQADPSSQRLAVIDG
EIGELSRKIGEATKALLALGFTPEIQESLEQLKTAREALEEERATLLLPQAEKLTAAQLEAFSNGLLDDEPM
KLNHVLQTAGYSMVVHPDGSIDVDGKRFVYEGANRKKKVYKLRLLGEDRQWELPILSPEQAASLARSVDGGY
LPPNSSEEIARYYEKVKHLVR*
AnnotationID:6299GeneID:6298
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 12:12:49
Gene Name:
Confidence Code:4
GeneProduct:possible recombinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|28869517|ref|NP_792136.1|  hypothetical protein PSPTO2317 [Pseudomonas syringae pv. tomato str. DC3000]
gi|28852759|gb|AAO55831.1|  conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
     Length=534
     Score =  372 bits (954),  Expect = 2e-101
     Identities = 217/482 (45%), Positives = 295/482 (61%), Gaps = 17/482 (3%)

gi|77459702|ref|YP_349209.1|  Recombinase [Pseudomonas fluorescens PfO-1]
gi|77383705|gb|ABA75218.1|  Recombinase [Pseudomonas fluorescens PfO-1]
     Length=532
     Score =  324 bits (831),  Expect = 4e-87
     Identities = 195/503 (38%), Positives = 282/503 (56%), Gaps = 35/503 (6%)








 
Structural Features:
COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, 
recombination, and repair].
             CD-Length = 222 residues,  91.9% aligned
             Score = 63.2 bits (153), Expect = 8e-11

pfam00239, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase 
family (this family) contains the active site and the dimer interface.
             CD-Length = 139 residues, 100.0% aligned
             Score = 37.5 bits (87), Expect = 0.004






   
Genomic Context:






   
Comment:


















    ReferenceID:12435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16930




  
Author/Investigator(s):
        SMART SEARCH





  
Title:
        SMART SEARCH




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:show_motifs.pl


    		




 
URL:

















    ReferenceID:16931




  
Author/Investigator(s):
        SMART SEARCH





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:PDF (text/plain)







    
Data:show_motifs.pdf


    		




 
URL:

















    ReferenceID:29709




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6298
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198877
                           gb|AAO55831.1|
                           (AE016864) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           562
                           40.74
                           55.16
                           65
                           967.0
     

     






      

          
GC ORFID: 49300How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3012640Stop: 3014217

          
Length: 1578


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCTTCTGCTTTCTCTTATGTGCGGTTCTCCTCTGGCAAGCAAGCCAAGGGATCGTCTGAACACCGACAG 
CGAGCAATGCTCGGCCAGTGGCTGGAGCAACACCCTTCCTTCACTCTCTCCGATCTCCGATTCGAAGACTTA 
GGCCGTTCCGGCTTCTCTGGTGAGCATCTCGACCACGGCCTAGGGCAACTCCTTGCCGCCATCGATAGCGGA 
GCTATCAAGAGCGGGGATGTGATTCTGGTTGAGGCTGTAGACCGGATAGGTCGCCTTGAGCCTCTGGAAATG 
CTCCCCCTCTTCTCCCGGATCGTGAAGGCTGGAGTATCTGTAATCACCCTCGAAGACGGCCACGTCTACGAT 
AGAAGCTCTGTCAACGAAACGTCTCTGTTCCTGCTGGTAGCCAAGATTCAGCAAGCCCACGAATACAGTAAC 
CGCCTCAGCAGGCGCATAAACGCCTCCTATACAGCCCGCAGGGAGAAAGCTAAGGCAGGGTTAGGGATCAAG 
CGAGAAACGCCCGTATGGCTCACTACGGACGGTCAGTTAGTGCCTCACGTCGCCCCGCACATCGCCCAAGCC 
TTCCAAGACTATGCCGATGGCCTAGGAGAGCGCCGCATCTGTCGCAAGCTTCGCGAATCTGGCCTTGAGGAG 
TTCAGCAAGACCAACGCCACCACTGTCCGCCGCTGGCTCAAGAACAAGACTGCTATTGGCTACTGGAACGAT 
ATTCCAGATGTTTACCCGCACGTTGTAGACCCAGCCCTTTTCTACCGAGTGCAACAGCGCCTAGACGCTCCG 
AAGGTAGACAGAGCCAAGCCTTCCGCCCATTACCTCACAGGCTTAGTGAAGTGTGCGGTATGTGGTCGTAAC 
TACAACTACAAACAACGCAAGCACACAGACCCGGCCATGCTCTGCACTTCCCGGGCTCGCCTAGCTGGAGAA 
GGCTGTTCCAACTCCAAAACCTACCCTGTGATTGTTCTCGATCAGGTGCGGAAGCTTACAAGCCTCCCTTTC 
CTACAGCATGCAATGGAGAGCGCAAGCTCTCAGGCGGACCCATCCTCACAGCGCCTAGCTGTAATCGATGGA 
GAGATTGGGGAGCTTTCCCGGAAAATCGGCGAAGCCACTAAAGCACTCCTTGCGCTTGGATTCACGCCGGAG 
ATTCAGGAAAGCTTAGAGCAGCTTAAAACAGCCCGTGAAGCATTGGAAGAGGAAAGGGCTACCTTACTACTC 
CCTCAAGCTGAAAAGCTCACAGCGGCTCAATTAGAGGCCTTCTCTAACGGCCTACTCGACGATGAACCAATG 
AAGCTCAACCACGTCTTGCAAACTGCCGGCTACTCCATGGTTGTTCACCCGGACGGGTCTATTGACGTAGAT 
GGGAAGAGGTTTGTTTACGAAGGAGCCAACAGGAAGAAGAAAGTCTACAAGCTCCGCCTCCTTGGCGAGGAT 
AGGCAATGGGAACTCCCCATCCTCTCCCCAGAGCAAGCAGCCAGCCTTGCCCGCTCCGTGGACGGAGGATAC 
CTCCCCCCGAATTCCAGCGAGGAGATAGCCCGCTACTATGAGAAGGTGAAACACCTAGTTCGGTAA