ViewGene

Locus Name:
GeneID:
Location:

GeneID:6297
TrivialName: PA14_22280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22280
PAO1 Ortholog Locus:
Sequence Length:264
Protein Length:87
Start: 1941585
Stop: 1941322
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06628.1|AE004747_1 (AE004747) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGACCCGCTACCGTGATGTCCTCGAACTGCATACCGGCCACCCCGCCTCCGATGGCGCCGGCGTCCGCCTG
ACCCGCGTGATCGGCGGCCCGTCCCCGGAACGCTTCGATCCGTTCCTGATGCTCGACCAGTTCGATACCCAG
AACCCGGACGACTATGTCGCCGGCTTCCCTTCGCACCCGCACCGCGGCTTCGAGACCGTGACCTACATGCTC
GCAAGACAACACGAAATAGACACAGCCTCTTCCCTAGCTGTACACTGA
Translation:
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYML
ARQHEIDTASSLAVH*
AnnotationID:6298GeneID:6297
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 12:12:51
Gene Name:
Confidence Code:3
GeneProduct:putative pirin-related protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|15598436|ref|NP_251930.1|  hypothetical protein PA3240 [Pseudomonas aeruginosa PAO1]
     Length=285
     Score =  156 bits (394),  Expect = 2e-37
     Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)
Structural Features:
COG1741, Pirin-related protein [General function prediction only].
             CD-Length = 276 residues, only  26.1% aligned
             Score = 68.0 bits (166), Expect = 2e-13

pfam02678, Pirin.
             CD-Length = 107 residues, only  53.3% aligned
             Score = 54.5 bits (131), Expect = 3e-09
Genomic Context:
Comment:
PAO1 PA3240 is split into two PA14 ORFs: PA14_22280 (GeneID 6297) is 100% identical to the first 72 amino acids
of PA3240, and PA14_22071 (GeneID 7360) is 99% identical to the last 210 aa of PA3240.  These PA14 ORFs border a 
PA14-specific insertion.
ReferenceID:12433
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29707
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32303
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6297_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6297

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7963 PA3240_tr translation of PA3240 285 27.01 28.07 198 389.0
198874 gb|AAG06628.1|AE004747_1 (AE004747) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 285 27.01 28.07 198 389.0
198875 gb|AAO57326.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 284 19.36 22.88 197 271.0
198876 gb|AAQ59594.1| (AE016916) probable pirin-like protein [Chromobacterium violaceum ATCC 12472] 279 17.56 20.43 192 244.0
GC ORFID: 49299How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3012346Stop: 3012609
Length: 264
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3240 translation of PA3240Homolog Bit Score 156.0
Other Homologs: t_PA3240 translation of PA3240 (BLASTP 156), psyr_15may02_Scaffold16_revised_gene2660 related to: gi|15598436|ref|NP_251930.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] sp|Q9HZ00|YW40_PSEAE Hypothetical protein PA3240 pir||B83239 conserved hypothetical protein PA3240 [imported] - Pseudomonas aeruginosa (strain PAO1) -TRUNCATED- (BLASTP 117)
GC ORF Sequence
ATGACCCGCTACCGTGATGTCCTCGAACTGCATACCGGCCACCCCGCCTCCGATGGCGCCGGCGTCCGCCTG
ACCCGCGTGATCGGCGGCCCGTCCCCGGAACGCTTCGATCCGTTCCTGATGCTCGACCAGTTCGATACCCAG
AACCCGGACGACTATGTCGCCGGCTTCCCTTCGCACCCGCACCGCGGCTTCGAGACCGTGACCTACATGCTC
GCAAGACAACACGAAATAGACACAGCCTCTTCCCTAGCTGTACACTGA