ViewGene

Locus Name:
GeneID:
Location:

GeneID:6292
TrivialName: PA14_22500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22500
PAO1 Ortholog Locus:
Sequence Length:735
Protein Length:244
Start: 1958847
Stop: 1958113
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM87096.1|AE013957_11 (AE013957) hypothetical [Yersinia pestis KIM]
Identities = 123/235 (52%), Positives = 156/235 (66%), Gaps = 2/235 (0%)
Sequence:
ATGAACTGCGATCCGGCCACCGGCAGTTGCCGGATTCCCGACGCTGCTCCCATCCTCCCCCAGGGGGCGAAG
CAGGCCCCTGGCGGCGAAGTCACGCTCAGGTACATCGGCGACCCCATGTGCTCCTGGTGCTGGGGTATTTCC
TCCACGCTCGAAGAACTCGCACGGTACTGCGAACAGAAGGGTATCGGCTTCACCCTCACCATGGGCGGCCTG
CGCGCGGGCGGGGGCGACGCATGGGGGCCGGAGTTCCGGGAGTTTCTACGCCGGGAATGGACCCATATCGCC
AAGGTCACCGGTCAACCATTCGGTTTTTCCCTGCTGTCGGCAAAGCATTTCGACTATGACACGGAGCCTGCC
TGCCGAGCCGTTGTGGTCGCCGAGCAAATGCTCGACCAGAAGCGGCCTGTCGCCTCCGCGACCCTGGCATTT
TTCTCTGCCGTGCAGCGCAAGTTCTATGTCGAAGGCGAGGACCCCAAGAACGTGGACTTTTATAGATCCATT
TGCGAAGACGCTTCGCTATCGTTCGAAGACTTCCGCGCGCATTTCGCCACTGCCGCTGCACGGCAAGCCGTC
TATCGGCAATTCGCCCAGTGCGGAGAGTGGGGCGTACGCGCATTCCCCACCCTTCTGCTTGACCTGGCTGGT
GATCTGAAGCAACTCAGTTCAGGCGCCACCACAGCGGCAAGCGTGATCGAACGTATCGAACATCTGCTGGGC
GCACGCACCAACTGA
Translation:
MNCDPATGSCRIPDAAPILPQGAKQAPGGEVTLRYIGDPMCSWCWGISSTLEELARYCEQKGIGFTLTMGGL
RAGGGDAWGPEFREFLRREWTHIAKVTGQPFGFSLLSAKHFDYDTEPACRAVVVAEQMLDQKRPVASATLAF
FSAVQRKFYVEGEDPKNVDFYRSICEDASLSFEDFRAHFATAAARQAVYRQFAQCGEWGVRAFPTLLLDLAG
DLKQLSSGATTAASVIERIEHLLGARTN*
AnnotationID:6293GeneID:6292
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 14:02:37
Gene Name:
Confidence Code:3
GeneProduct:possible protein-disulfide isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3531
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|51591004|emb|CAH22663.1|  Conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953]
     Length=238
     Score =  265 bits (678),  Expect = 7e-70
     Identities = 124/235 (52%), Positives = 157/235 (66%), Gaps = 2/235 (0%)

gi|22127422|ref|NP_670845.1|  hypothetical protein y3548 [Yersinia pestis KIM]
gi|15978720|emb|CAC89484.1|  conserved hypothetical protein [Yersinia pestis CO92]
gi|21960512|gb|AAM87096.1|  hypothetical [Yersinia pestis KIM]
gi|16120956|ref|NP_404269.1|  hypothetical protein YPO0630 [Yersinia pestis CO92]
gi|25509784|pir||AI0077  conserved hypothetical protein YPO0630 [imported] - Yersinia pestis (strain CO92)
     Length=238
     Score =  262 bits (670),  Expect = 6e-69
     Identities = 123/235 (52%), Positives = 156/235 (66%), Gaps = 2/235 (0%)

gi|45442712|ref|NP_994251.1|  Predicted protein-disulfide isomerase [Yersinia pestis biovar Medievalis str. 91001]
     Length=200
     Score =  234 bits (597),  Expect = 2e-60
     Identities = 107/196 (54%), Positives = 135/196 (68%), Gaps = 0/196 (0%)
Structural Features:
COG3531, Predicted protein-disulfide isomerase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 212 residues,  90.6% aligned
Score =  178 bits (452), Expect = 7e-46
Identities = 73/201 (36%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Genomic Context:
Comment:
ReferenceID:12423
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29697
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32318
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6292_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6292

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198872 gb|AAM87096.1|AE013957_11 (AE013957) hypothetical [Yersinia pestis KIM] 251 49.40 62.94 20 680.0
198873 emb|CAC89484.1| (AJ414143) conserved hypothetical protein [Yersinia pestis CO92] 251 49.40 62.94 20 680.0
GC ORFID: 49294How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2995084Stop: 2995818
Length: 735
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAACTGCGATCCGGCCACCGGCAGTTGCCGGATTCCCGACGCTGCTCCCATCCTCCCCCAGGGGGCGAAG
CAGGCCCCTGGCGGCGAAGTCACGCTCAGGTACATCGGCGACCCCATGTGCTCCTGGTGCTGGGGTATTTCC
TCCACGCTCGAAGAACTCGCACGGTACTGCGAACAGAAGGGTATCGGCTTCACCCTCACCATGGGCGGCCTG
CGCGCGGGCGGGGGCGACGCATGGGGGCCGGAGTTCCGGGAGTTTCTACGCCGGGAATGGACCCATATCGCC
AAGGTCACCGGTCAACCATTCGGTTTTTCCCTGCTGTCGGCAAAGCATTTCGACTATGACACGGAGCCTGCC
TGCCGAGCCGTTGTGGTCGCCGAGCAAATGCTCGACCAGAAGCGGCCTGTCGCCTCCGCGACCCTGGCATTT
TTCTCTGCCGTGCAGCGCAAGTTCTATGTCGAAGGCGAGGACCCCAAGAACGTGGACTTTTATAGATCCATT
TGCGAAGACGCTTCGCTATCGTTCGAAGACTTCCGCGCGCATTTCGCCACTGCCGCTGCACGGCAAGCCGTC
TATCGGCAATTCGCCCAGTGCGGAGAGTGGGGCGTACGCGCATTCCCCACCCTTCTGCTTGACCTGGCTGGT
GATCTGAAGCAACTCAGTTCAGGCGCCACCACAGCGGCAAGCGTGATCGAACGTATCGAACATCTGCTGGGC
GCACGCACCAACTGA