ViewGene
Locus Name:
GeneID:
Location:

GeneID:6291
TrivialName: PA14_22520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22520
PAO1 Ortholog Locus:
Sequence Length:1056
Protein Length:351
Start: 1960494
Stop: 1959439
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL41963.1| (AE009059) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
Identities = 157/277 (56%), Positives = 201/277 (72%)
Sequence:
TTGCAGCCCGTCCGGCAGTCAGGGCCGCGCTACAGGCCGAAGGACTGGAGGAACACCCCGACCAGTGCTGAG
CCCTCGCTAGGTACCGGTTCTACGCGGACTGACGCCAGCGCTAGCGCAGACGAGACCCGTGGCTGGGTTTCG
CAGCCGACGTCAGCCCCCCTGGACTTTCCTGAACGCGTCCCGCTGCTCGAGGCGGACATCCTGGAGATCGAT
ATGTCGAAGAAAATTCTTGTTCGAGGTGCGACGGGAACAGTCGGCAAGCCGTTAGTCGAAGGCCTGCTGGCC
AAGGGAGAGGCCGTCAAGGCCGCTTCCCGCGGAAATCGGAAAATGGATGGAGTCGAGAGTACGCCGTTCGAT
TTCGGCAAACCGGAAACCATCGCCACCGCCCTGGAGGGTGTGGATCGCACTTACATGCTCCTGCCCGCCGGC
TACCTGAACGTACGCGATCTGCTCCTGCCGTTCGTCGAAGCCGCCGCAAGCCGCAAGGTGAAAATAGTCTTC
CAGAGCGCCTTTGGCGTGGATGCGAATGGCGCCAACCCCATGCGCCAAATGGAAATCCTGCTGGAGAAATCC
GGCACACCCCATGTGATCTTGCGGCCGAACTGGTTCTCCGACAATTTCCATCACTTCTGGAAAGCCGGCCTC
GACCAGGGGCAGATCGCCTTGCCAGCCGGTGATAGCAGGACCAGTTTCATCGATGTGCGCGATATTGCGGCC
AGCGCCATCGCCGCGCTCACCTCAACCGCTTTCGACGGCAAAGCATTCAACCTCACCGGTCCCGAAGCGCTC
AGTTATGCCGATGCCGCGGCGATCCTGTCCGAAGTGACCGGCAAGCCCGTGCGATACGCCGCGACATCGGAC
AAGGCGTTCATCGACATGCTGGAGAACAACGGTGTGCCCGCCGCCAATGCGGCGCACATGGCCTCGATCTTC
CACCCGGTGCGCCAAGGCTGGATGAGCGTAGTGACCGACGATGTCATGAAGCTCACCGGCAAGAGACCGCGG
ACACTGCGGGAATACGCACAAGACAAGGTCGCCGCCCTGACGGCCTAG
Translation:
MQPVRQSGPRYRPKDWRNTPTSAEPSLGTGSTRTDASASADETRGWVSQPTSAPLDFPERVPLLEADILEID
MSKKILVRGATGTVGKPLVEGLLAKGEAVKAASRGNRKMDGVESTPFDFGKPETIATALEGVDRTYMLLPAG
YLNVRDLLLPFVEAAASRKVKIVFQSAFGVDANGANPMRQMEILLEKSGTPHVILRPNWFSDNFHHFWKAGL
DQGQIALPAGDSRTSFIDVRDIAASAIAALTSTAFDGKAFNLTGPEALSYADAAAILSEVTGKPVRYAATSD
KAFIDMLENNGVPAANAAHMASIFHPVRQGWMSVVTDDVMKLTGKRPRTLREYAQDKVAALTA*
AnnotationID:6292GeneID:6291
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 14:02:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0702
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|17934857|ref|NP_531647.1|  hypothetical protein Atu0949 [Agrobacterium tumefaciens str. C58]
gi|15155950|gb|AAK86754.1|  AGR_C_1732p [Agrobacterium tumefaciens str. C58]
gi|17739332|gb|AAL41963.1|  conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
gi|15888288|ref|NP_353969.1|  hypothetical protein AGR_C_1732 [Agrobacterium tumefaciens str. C58]
gi|25522818|pir||AE2693  conserved hypothetical protein Atu0949 [imported] - Agrobacterium tumefaciens (strain C58, Dupont)
gi|25518916|pir||A97475  hypothetical protein AGR_C_1732 [imported] - Agrobacterium tumefaciens (strain C58, Cereon)
     Length=279
     Score =  314 bits (804),  Expect = 3e-84
     Identities = 157/277 (56%), Positives = 201/277 (72%), Gaps = 0/277 (0%)






 
Structural Features:
COG0702, Predicted nucleoside-diphosphate-sugar epimerases 
[Cell envelope biogenesis, outer membrane / 
Carbohydrate transport and metabolism]
CD-Length = 275 residues, 100.0% aligned
Score =  114 bits (287), Expect = 1e-26
Identities = 78/275 (28%), Positives = 115/275 (41%), Gaps = 16/275 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:16090




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29695




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32319




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6291_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6291
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198870
                           gb|AAL41963.1|
                           (AE009059) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           351
                           44.72
                           57.26
                           72
                           803.0
     

     
     
198871
                           gb|AAK86754.1|
                           (AE008025) AGR_C_1732p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           351
                           44.72
                           57.26
                           72
                           803.0
     

     






      

          
GC ORFID: 49293How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2993437Stop: 2994492

          
Length: 1056


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGCAGCCCGTCCGGCAGTCAGGGCCGCGCTACAGGCCGAAGGACTGGAGGAACACCCCGACCAGTGCTGAG 
CCCTCGCTAGGTACCGGTTCTACGCGGACTGACGCCAGCGCTAGCGCAGACGAGACCCGTGGCTGGGTTTCG 
CAGCCGACGTCAGCCCCCCTGGACTTTCCTGAACGCGTCCCGCTGCTCGAGGCGGACATCCTGGAGATCGAT 
ATGTCGAAGAAAATTCTTGTTCGAGGTGCGACGGGAACAGTCGGCAAGCCGTTAGTCGAAGGCCTGCTGGCC 
AAGGGAGAGGCCGTCAAGGCCGCTTCCCGCGGAAATCGGAAAATGGATGGAGTCGAGAGTACGCCGTTCGAT 
TTCGGCAAACCGGAAACCATCGCCACCGCCCTGGAGGGTGTGGATCGCACTTACATGCTCCTGCCCGCCGGC 
TACCTGAACGTACGCGATCTGCTCCTGCCGTTCGTCGAAGCCGCCGCAAGCCGCAAGGTGAAAATAGTCTTC 
CAGAGCGCCTTTGGCGTGGATGCGAATGGCGCCAACCCCATGCGCCAAATGGAAATCCTGCTGGAGAAATCC 
GGCACACCCCATGTGATCTTGCGGCCGAACTGGTTCTCCGACAATTTCCATCACTTCTGGAAAGCCGGCCTC 
GACCAGGGGCAGATCGCCTTGCCAGCCGGTGATAGCAGGACCAGTTTCATCGATGTGCGCGATATTGCGGCC 
AGCGCCATCGCCGCGCTCACCTCAACCGCTTTCGACGGCAAAGCATTCAACCTCACCGGTCCCGAAGCGCTC 
AGTTATGCCGATGCCGCGGCGATCCTGTCCGAAGTGACCGGCAAGCCCGTGCGATACGCCGCGACATCGGAC 
AAGGCGTTCATCGACATGCTGGAGAACAACGGTGTGCCCGCCGCCAATGCGGCGCACATGGCCTCGATCTTC 
CACCCGGTGCGCCAAGGCTGGATGAGCGTAGTGACCGACGATGTCATGAAGCTCACCGGCAAGAGACCGCGG 
ACACTGCGGGAATACGCACAAGACAAGGTCGCCGCCCTGACGGCCTAG