ViewGene

Locus Name:
GeneID:
Location:

GeneID:6290
TrivialName: PA14_22530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22530
PAO1 Ortholog Locus:
Sequence Length:618
Protein Length:205
Start: 1961041
Stop: 1960424
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54463.1| (AE016859) glutathione S-transferase [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 134/201 (66%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
Sequence:
ATGAAACTGTACTACTCCCCCGGCTCTTGCTCGCTGGCCATCCACATCGTGCTTCGCGAGGCCAACGTGCCT
CACGAACTGGCCAAGGTCGACCTGTGGCAGCACAAGACCGCCTCGGGCGGCGATTACTTCCAGATCAACCCG
AAGGGCACGGCGCCCGCCCTCGAGTTCGAAGGCGGCTTGCTGACCGAAGGCGCCGCCATCAGCCAATACCTC
GCGGATCGCTACGCCCCAACGTTGGTGCCAGCCAACGGAACGCTGGAACGCAGCCGTTTGCACGAGATACTG
AATTACCTCTCTTCGGATTACCACAAGTCCTTCACCCCGCTGTTCTACCTGTCCCCTTCGGACGACCCCACG
GCCGCGCAGCGCCCAGTGATAGCCAAAGTGGCCTACCTGAACAACCTCCTCGCGGACGGCCGCCCATACATC
CTGGGTGACGAGTTCACCGTCGCGGACGCACATCTCTTCGCCCTTACGCGCTGGTGCCCCCAATTCGGCATT
TCGCTGGCCCCATTCCCAGCATTGATGGATTTCATGGCCAGGATTGCAGCCCGTCCGGCAGTCAGGGCCGCG
CTACAGGCCGAAGGACTGGAGGAACACCCCGACCAGTGCTGA
Translation:
MKLYYSPGSCSLAIHIVLREANVPHELAKVDLWQHKTASGGDYFQINPKGTAPALEFEGGLLTEGAAISQYL
ADRYAPTLVPANGTLERSRLHEILNYLSSDYHKSFTPLFYLSPSDDPTAAQRPVIAKVAYLNNLLADGRPYI
LGDEFTVADAHLFALTRWCPQFGISLAPFPALMDFMARIAARPAVRAALQAEGLEEHPDQC*
AnnotationID:6291GeneID:6290
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 16:04:43
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54463.1| (AE016859) glutathione S-transferase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 206

 Score =  269 bits (687), Expect = 9e-72
 Identities = 134/201 (66%), Positives = 157/201 (78%), Gaps = 1/201 (0%)

>dbj|BAA12883.1| (D85853) glutathione S-transferase [Pseudomonas pseudoalcaligenes]
          Length = 203

 Score =  172 bits (437), Expect = 9e-43
 Identities = 95/201 (47%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

>gb|AAM85534.1|AE013799_9 (AE013799) glutathionine S-transferase [Yersinia pestis KIM]
          Length = 202

 Score =  164 bits (415), Expect = 3e-40
 Identities = 90/202 (44%), Positives = 131/202 (64%), Gaps = 4/202 (1%)
Structural Features:
COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].
             CD-Length = 211 residues,  89.6% aligned
             Score = 97.2 bits (241), Expect = 1e-21
Genomic Context:
Comment:
ReferenceID:12419
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29693
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32320
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6290_cdd.html
URL:
ReferenceID:32452
Author/Investigator(s): Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, Nelson WC, Davidsen T, Zafar N, Zhou L, Liu J, Yuan Q, Khouri H, Fedorova N, Tran B, Russ
Title: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
PubMed:
MedLine:
Source:
Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10181-6. Epub 2003 Aug 19.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=12928499&dopt=Citation
Homologs By Global Alignment
Gene ID:6290

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198822 gb|AAO54463.1| (AE016859) glutathione S-transferase [Pseudomonas syringae pv. tomato str. DC3000] 206 65.04 77.18 1 684.0
198823 emb|CAE26264.1| (BX572595) putative glutathionine S-transferase [Rhodopseudomonas palustris CGA009] 208 50.48 66.34 8 491.0
198830 gb|AAQ57968.1| (AE016910) glutathione S-transferase family protein [Chromobacterium violaceum ATCC 12472] 213 47.88 62.44 18 444.0
198824 gb|AAP44197.1| (AY208917) glutathione-S-transferase-like protein [Pseudomonas sp. ND6] 208 47.59 64.42 6 459.0
198825 gb|AAO64285.1| (AF491307) putative gluthione S-transferase [Pseudomonas putida] 208 47.59 64.42 6 459.0
GC ORFID: 49292How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2992890Stop: 2993507
Length: 618
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAACTGTACTACTCCCCCGGCTCTTGCTCGCTGGCCATCCACATCGTGCTTCGCGAGGCCAACGTGCCT
CACGAACTGGCCAAGGTCGACCTGTGGCAGCACAAGACCGCCTCGGGCGGCGATTACTTCCAGATCAACCCG
AAGGGCACGGCGCCCGCCCTCGAGTTCGAAGGCGGCTTGCTGACCGAAGGCGCCGCCATCAGCCAATACCTC
GCGGATCGCTACGCCCCAACGTTGGTGCCAGCCAACGGAACGCTGGAACGCAGCCGTTTGCACGAGATACTG
AATTACCTCTCTTCGGATTACCACAAGTCCTTCACCCCGCTGTTCTACCTGTCCCCTTCGGACGACCCCACG
GCCGCGCAGCGCCCAGTGATAGCCAAAGTGGCCTACCTGAACAACCTCCTCGCGGACGGCCGCCCATACATC
CTGGGTGACGAGTTCACCGTCGCGGACGCACATCTCTTCGCCCTTACGCGCTGGTGCCCCCAATTCGGCATT
TCGCTGGCCCCATTCCCAGCATTGATGGATTTCATGGCCAGGATTGCAGCCCGTCCGGCAGTCAGGGCCGCG
CTACAGGCCGAAGGACTGGAGGAACACCCCGACCAGTGCTGA