ViewGene
Locus Name:
GeneID:
Location:

GeneID:629
TrivialName: PA14_26020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26020
PAO1 Ortholog Locus:PA2939
Sequence Length:1611
Protein Length:536
Start: 2275078
Stop: 2273468
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06327.1|AE004720_3 (AE004720) probable aminopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 536/536 (100%), Positives = 536/536 (100%)
Sequence:
ATGAGCAACAAGAACAATCTCAGATACGCACTCGGCGCCCTCGCCCTCTCGGTTTCCGCCGCATCCCTGGCG
GCGCCTTCGGAAGCGCAACAGTTCACCGAGTTCTGGACCCCCGGCAAACCCAACCCGTCGATCTGCAAATCG
CCGTTGCTGGTCAGCACCCCGCTTGGCCTGCCGCGCTGCCTGCAAGCCAGCAACGTGGTCAAGCGCCTGCAG
AAGCTGGAAGACATCGCCAGCCTCAACGACGGCAACCGCGCCGCCGCCACGCCGGGCTACCAGGCCTCCGTC
GACTACGTGAAGCAGACCCTGCAGAAAGCCGGCTACAAGGTCAGCGTGCAGCCCTTCCCGTTCACCGCCTAC
TACCCGAAAGGCCCGGGTAGCCTGAGCGCCACCGTGCCGCAGCCGGTCACCTACGAATGGGAGAAGGATTTC
ACCTACCTGTCGCAGACCGAGGCAGGCGACGTCACCGCCAAGGTGGTCCCGGTGGACCTGTCCCTCGGCGCC
GGCAACACCTCCACCAGCGGTTGCGAAGCGGAAGACTTCGCCAACTTCCCGGCCGGCTCGATCGCGCTGATC
CAGCGCGGCACCTGCAACTTCGAGCAGAAGGCCGAGAACGCCGCGGCCGCCGGCGCCGCCGGGGTGATCATC
TTCAACCAGGGCAACACCGACGACCGCAAGGGCCTGGAGAACGTCACCGTGGGCGAGTCCTACGAGGGCGGC
ATCCCGGTGATCTTCGCCACCTACGACAACGGTGTGGCCTGGTCGCAGACCCCGGACCTGCAGTTGCACCTG
GTGGTCGACGTGGTACGCAAGAAGACCGAGACCTACAACGTGGTCGCCGAGACCCGTCGCGGCAACCCGAAC
AACGTGGTGATGGTCGGCGCGCACCTCGACTCGGTGTTCGAAGGCCCCGGTATCAACGACAACGGTTCGGGC
AGCGCCGCCCAACTGGAGATGGCCGTGCTGCTGGCCAAGGCGCTGCCGGTCAACAAGGTGCGCTTCGCCTGG
TGGGGCGCCGAGGAAGCCGGCCTGGTGGGCTCGACCCACTACGTGCAGAACCTCGCCCCGGAAGAGAAGAAG
AAGATCAAGGCCTACCTGAACTTCGACATGATCGGCTCGCCGAACTTCGGCAACTTCATCTATGACGGCGAC
GGTTCCGACTTCGGCCTCCAGGGTCCGCCCGGCTCGGCCGCCATCGAGCGCCTGTTCGAAGCCTACTTCCGC
CTGCGCGGCCAGCAATCGGAAGGCACCGAGATCGACTTCCGCTCCGACTACGCCGAGTTCTTCAACAGCGGC
ATCGCTTTCGGCGGCCTGTTCACCGGCGCCGAGGGCCTGAAGACCGAAGAGCAGGCGCAGAAGTACGGCGGC
ACCGCCGGCAAGGCCTACGACGAGTGCTACCACAGCAAGTGCGACGGCATCGCCAACATCAACCAGGACGCC
CTGGAGATCCACAGCGACGCCATGGCCTTCGTGACCAGCTGGCTGTCGCTGTCGACCAAGGTGGTCGACGAC
GAGATCGCCGCCGCCGGGCAGAAAGCACAATCGCGGTCGCTGCAGATGCAGAAGAGCGCCAGCCAGATCGAA
CGCTGGGGTCACGACTTCATCAaGTAA
Translation:
MSNKNNLRYALGALALSVSAASLAAPSEAQQFTEFWTPGKPNPSICKSPLLVSTPLGLPRCLQASNVVKRLQ
KLEDIASLNDGNRAAATPGYQASVDYVKQTLQKAGYKVSVQPFPFTAYYPKGPGSLSATVPQPVTYEWEKDF
TYLSQTEAGDVTAKVVPVDLSLGAGNTSTSGCEAEDFANFPAGSIALIQRGTCNFEQKAENAAAAGAAGVII
FNQGNTDDRKGLENVTVGESYEGGIPVIFATYDNGVAWSQTPDLQLHLVVDVVRKKTETYNVVAETRRGNPN
NVVMVGAHLDSVFEGPGINDNGSGSAAQLEMAVLLAKALPVNKVRFAWWGAEEAGLVGSTHYVQNLAPEEKK
KIKAYLNFDMIGSPNFGNFIYDGDGSDFGLQGPPGSAAIERLFEAYFRLRGQQSEGTEIDFRSDYAEFFNSG
IAFGGLFTGAEGLKTEEQAQKYGGTAGKAYDECYHSKCDGIANINQDALEIHSDAMAFVTSWLSLSTKVVDD
EIAAAGQKAQSRSLQMQKSASQIERWGHDFIK*
AnnotationID:638GeneID:629
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 12:12:31
Gene Name:
Confidence Code:3
GeneProduct:putative aminopeptidase
Cell Localization:()
Synonyms:PA2939
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2234,pfam04389
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC72584.1| (AP005040) putative aminopeptidase [Streptomyces avermitilis
           MA-4680]
          Length = 315

 Score =  221 bits (563), Expect = 9e-57
 Identities = 118/224 (52%), Positives = 150/224 (66%), Gaps = 15/224 (6%)

>emb|CAC08290.1| (AL939120) putative aminopeptidase (putative secreted protein)
           [Streptomyces coelicolor A3(2)]
          Length = 324

 Score =  215 bits (547), Expect = 6e-55
 Identities = 115/224 (51%), Positives = 147/224 (65%), Gaps = 15/224 (6%)








 
Structural Features:
COG2234, Iap, Predicted aminopeptidases
CD-Length = 435 residues, 100.0% aligned
Score =  198 bits (503), Expect = 2e-51
Identities = 120/484 (24%), Positives = 190/484 (39%), Gaps = 54/484 (11%)

pfam04389, Peptidase family M28.
CD-Length = 233 residues,  99.1% aligned
Score =  188 bits (478), Expect = 2e-48
Identities = 82/251 (32%), Positives = 109/251 (43%), Gaps = 26/251 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1261




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18403




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36125




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:629_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:629
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1066
                           PA2939_tr
                           translation of PA2939
                           536
                           99.99
                           99.99
                           0
                           2783.0
     

     
     
40942
                           gb|AAG06327.1|AE004720_3
                           (AE004720) probable aminopeptidase [Pseudomonas aeruginosa PAO1]
                           536
                           99.99
                           99.99
                           0
                           2783.0
     

     
     
40943
                           gb|AAK44656.1|
                           (AE006947) hydrolase [Mycobacterium tuberculosis CDC1551]
                           557
                           35.36
                           47.75
                           85
                           738.0
     

     
     
40945
                           dbj|BAC72584.1|
                           (AP005040) putative aminopeptidase [Streptomyces avermitilis MA-4680]
                           550
                           29.45
                           38.72
                           249
                           620.0
     

     
     
40946
                           emb|CAC08290.1|
                           (AL939120) putative aminopeptidase (putative secreted protein) [Streptomyces coelicolor A3(2)]
                           544
                           28.30
                           37.13
                           228
                           602.0
     

     






      

          
GC ORFID: 43631How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2939Glimmer Score: 

          
Start: 2678847Stop: 2680457

          
Length: 1611


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2939 translation of PA2939Homolog Bit Score 1076.0

          
Other Homologs:  t_PA2939 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACAAGAACAATCTCAGATACGCACTCGGCGCCCTCGCCCTCTCGGTTTCCGCCGCATCCCTGGCG 
GCGCCTTCGGAAGCGCAACAGTTCACCGAGTTCTGGACCCCCGGCAAACCCAACCCGTCGATCTGCAAATCG 
CCGTTGCTGGTCAGCACCCCGCTTGGCCTGCCGCGCTGCCTGCAAGCCAGCAACGTGGTCAAGCGCCTGCAG 
AAGCTGGAAGACATCGCCAGCCTCAACGACGGCAACCGCGCCGCCGCCACGCCGGGCTACCAGGCCTCCGTC 
GACTACGTGAAGCAGACCCTGCAGAAAGCCGGCTACAAGGTCAGCGTGCAGCCCTTCCCGTTCACCGCCTAC 
TACCCGAAAGGCCCGGGTAGCCTGAGCGCCACCGTGCCGCAGCCGGTCACCTACGAATGGGAGAAGGATTTC 
ACCTACCTGTCGCAGACCGAGGCAGGCGACGTCACCGCCAAGGTGGTCCCGGTGGACCTGTCCCTCGGCGCC 
GGCAACACCTCCACCAGCGGTTGCGAAGCGGAAGACTTCGCCAACTTCCCGGCCGGCTCGATCGCGCTGATC 
CAGCGCGGCACCTGCAACTTCGAGCAGAAGGCCGAGAACGCCGCGGCCGCCGGCGCCGCCGGGGTGATCATC 
TTCAACCAGGGCAACACCGACGACCGCAAGGGCCTGGAGAACGTCACCGTGGGCGAGTCCTACGAGGGCGGC 
ATCCCGGTGATCTTCGCCACCTACGACAACGGTGTGGCCTGGTCGCAGACCCCGGACCTGCAGTTGCACCTG 
GTGGTCGACGTGGTACGCAAGAAGACCGAGACCTACAACGTGGTCGCCGAGACCCGTCGCGGCAACCCGAAC 
AACGTGGTGATGGTCGGCGCGCACCTCGACTCGGTGTTCGAAGGCCCCGGTATCAACGACAACGGTTCGGGC 
AGCGCCGCCCAACTGGAGATGGCCGTGCTGCTGGCCAAGGCGCTGCCGGTCAACAAGGTGCGCTTCGCCTGG 
TGGGGCGCCGAGGAAGCCGGCCTGGTGGGCTCGACCCACTACGTGCAGAACCTCGCCCCGGAAGAGAAGAAG 
AAGATCAAGGCCTACCTGAACTTCGACATGATCGGCTCGCCGAACTTCGGCAACTTCATCTATGACGGCGAC 
GGTTCCGACTTCGGCCTCCAGGGTCCGCCCGGCTCGGCCGCCATCGAGCGCCTGTTCGAAGCCTACTTCCGC 
CTGCGCGGCCAGCAATCGGAAGGCACCGAGATCGACTTCCGCTCCGACTACGCCGAGTTCTTCAACAGCGGC 
ATCGCTTTCGGCGGCCTGTTCACCGGCGCCGAGGGCCTGAAGACCGAAGAGCAGGCGCAGAAGTACGGCGGC 
ACCGCCGGCAAGGCCTACGACGAGTGCTACCACAGCAAGTGCGACGGCATCGCCAACATCAACCAGGACGCC 
CTGGAGATCCACAGCGACGCCATGGCCTTCGTGACCAGCTGGCTGTCGCTGTCGACCAAGGTGGTCGACGAC 
GAGATCGCCGCCGCCGGGCAGAAAGCACAATCGCGGTCGCTGCAGATGCAGAAGAGCGCCAGCCAGATCGAA 
CGCTGGGGTCACGACTTCATCAaGTAA