ViewGene
Locus Name:
GeneID:
Location:

GeneID:6289
TrivialName: PA14_22540
AnnotatorUID: urbach
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22540
PAO1 Ortholog Locus:
Sequence Length:555
Protein Length:184
Start: 1961671
Stop: 1961117
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN81753.1|AE016765_155 (AE016765) Hypothetical protein [Escherichia coli CFT073]
Identities = 123/182 (67%), Positives = 143/182 (78%) 
>gb|AAL44995.1| (AE009349) flavodoxin [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 193
 Score =  218 bits (556), Expect = 1e-56
 Identities = 104/180 (57%), Positives = 131/180 (72%)
Sequence:
ATGTCAAAAGCAGTCGTTGTTTATTTCTCCGGATATGGCCATACCAAGCGCGTAGCACAAGCGGCGGCGGAA
GGCGCACAGGCTTCGCTGGTCGAGATCGATAGCGAGGGCAACATTCCCGAGGCAGCCTGGGACTTGCTCGAC
CAGGCGCAATCCATCCTCTTCGGCGCGCCCACGTACATGGGCTCGGTGCCTTGGCAATTCAAGAAGTTCGCG
GACGCCACTTCCAGGAAGTGGTTTGTTCGGCAGTGGCAGGACAAGGTCTTCGGCGGCTTCACCAACAGCGCA
AGCCTGAACGGCGACAAGCAGGTTTCCCTGATCCTCATGCACACGCTGGCGTCCCAGCACGGCGGCATCTGG
GTCAGCCTGGGCCTGGCTCCCGCCAACACCTCGGCCTCGAGCCGCGCGGATATCAACAACCTCGGCGCCTCG
GTCGGCGCGCTGGTGCAGTCGCCGTCCGACGCGGATGCCCAGGCCATTCCCAGCGGCGATCTCGAGACCGTG
AAGCTCTACGCCGCTCGCGTCGCCAGGATCGGACAACAGCTGCATGCCTGA
Translation:
MSKAVVVYFSGYGHTKRVAQAAAEGAQASLVEIDSEGNIPEAAWDLLDQAQSILFGAPTYMGSVPWQFKKFA
DATSRKWFVRQWQDKVFGGFTNSASLNGDKQVSLILMHTLASQHGGIWVSLGLAPANTSASSRADINNLGAS
VGALVQSPSDADAQAIPSGDLETVKLYAARVARIGQQLHA*
AnnotationID:6290GeneID:6289
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 16:04:57
Gene Name:
Confidence Code:3
GeneProduct:putative flavodoxin
Cell Localization:()
Synonyms:wrbA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative tryptophan repressor binding protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|75241869|ref|ZP_00725688.1|  COG0655: Multimeric flavodoxin WrbA [Escherichia coli F11]
     Length=183
     Score =  258 bits (659),  Expect = 6e-68
     Identities = 123/182 (67%), Positives = 143/182 (78%), Gaps = 0/182 (0%)

gi|26249143|ref|NP_755183.1|  hypothetical protein c3304 [Escherichia coli CFT073]
 gi|11036548|gb|AAG27178.1|  unknown [Escherichia coli]
 gi|26109550|gb|AAN81753.1|  Hypothetical protein [Escherichia coli CFT073]
          Length=183

gi|26249143|ref|NP_755183.1|  hypothetical protein c3304 [Escherichia coli CFT073]
gi|11036548|gb|AAG27178.1|  unknown [Escherichia coli]
gi|26109550|gb|AAN81753.1|  Hypothetical protein [Escherichia coli CFT073]
     Length=183
     Score =  258 bits (658),  Expect = 8e-68
     Identities = 123/182 (67%), Positives = 143/182 (78%), Gaps = 0/182 (0%)Score =  258 bits (658),  Expect = 8e-68
     Identities = 123/182 (67%), Positives = 143/182 (78%), Gaps = 0/182 (0%)






 
Structural Features:
COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].
             CD-Length = 207 residues, only  66.2% aligned
             Score = 76.7 bits (188), Expect = 1e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:12417




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32321




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6289_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6289
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198808
                           gb|AAN81753.1|AE016765_155
                           (AE016765) Hypothetical protein [Escherichia coli CFT073]
                           184
                           66.84
                           77.71
                           1
                           657.0
     

     
     
198809
                           gb|AAG27178.1|AF270497_3
                           (AF270497) unknown [Escherichia coli]
                           184
                           66.84
                           77.71
                           1
                           657.0
     

     
     
198810
                           gb|AAL44995.1|
                           (AE009349) flavodoxin [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           193
                           53.88
                           68.39
                           9
                           552.0
     

     
     
198811
                           gb|AAK89238.1|
                           (AE008264) AGR_L_1309p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           193
                           53.88
                           68.39
                           9
                           552.0
     

     
     
198812
                           gb|AAM38552.1|
                           (AE012021) tryptophan repressor binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           191
                           52.87
                           65.44
                           7
                           518.0
     

     






      

          
GC ORFID: 49291How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2992260Stop: 2992814

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCAAAAGCAGTCGTTGTTTATTTCTCCGGATATGGCCATACCAAGCGCGTAGCACAAGCGGCGGCGGAA 
GGCGCACAGGCTTCGCTGGTCGAGATCGATAGCGAGGGCAACATTCCCGAGGCAGCCTGGGACTTGCTCGAC 
CAGGCGCAATCCATCCTCTTCGGCGCGCCCACGTACATGGGCTCGGTGCCTTGGCAATTCAAGAAGTTCGCG 
GACGCCACTTCCAGGAAGTGGTTTGTTCGGCAGTGGCAGGACAAGGTCTTCGGCGGCTTCACCAACAGCGCA 
AGCCTGAACGGCGACAAGCAGGTTTCCCTGATCCTCATGCACACGCTGGCGTCCCAGCACGGCGGCATCTGG 
GTCAGCCTGGGCCTGGCTCCCGCCAACACCTCGGCCTCGAGCCGCGCGGATATCAACAACCTCGGCGCCTCG 
GTCGGCGCGCTGGTGCAGTCGCCGTCCGACGCGGATGCCCAGGCCATTCCCAGCGGCGATCTCGAGACCGTG 
AAGCTCTACGCCGCTCGCGTCGCCAGGATCGGACAACAGCTGCATGCCTGA