ViewGene

Locus Name:
GeneID:
Location:

GeneID:6288
TrivialName: PA14_22550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22550
PAO1 Ortholog Locus:
Sequence Length:813
Protein Length:270
Start: 1961914
Stop: 1962726
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM87095.1|AE013957_10 (AE013957) putative transcriptional regulators [Yersinia pestis KIM]
Identities = 160/261 (61%), Positives = 209/261 (80%), Gaps = 1/261 (0%)
Sequence:
TTGCTCAATCGTACGACCCGTGCCCTGAGCCTTACGCACGATGGCAGCGCGTACTTCGACAAATGCCAGGTC
CTGCTGCAGCAGATAGACGAACTGGAGGCCACGCTCAGGGGCGGGACGGCGACGCCCATCGGCCGGCTCAGA
GTGGACTCCCTGATCACCATCGCCCGATGGGTGATCGCTCCAAGGCTGCACGACTTCCAGGCGCGCTACCCG
AGGATCCAGCTGCGGCTGAGTAGTTCGGACCGGATCAGCAATCTGCTGGAGGACGGCATCGATTGCACGATC
CGGGGAGGTGCGCTCAAGGACTCCAGCATGATCGCCAGGCATCTTTGCGACATCCAGATGGGCTTGTATGCC
TCGCCCGAGTACCTGGCCTCCATAGGCGGTGTAGACAGTCCGAACGATCTATCGCAGTTCAGGCGGTTGAGC
TGGTTCAGCGGCAGGGAGCGCAACCCGTTCATGTGGGAGCTGGAGTCCGGCCCGGAGCGTTTCGTGGTGCAG
TCCGGCGATGGAATGCAGTTCGACGAACCCGACGTGGCTATTTCGGCCTGCATGGCGGGCAGCGGCATCTGC
CCTGGCGCCCCATTCGCGGTGGCTGGATTCGTACGCGCAGGGAAACTTGTTCCGGTACTGCCGCAATGGCAC
TTTTCTGCGGCGCCGGTGCATGTCATCTACCCGGGCTCCAGGCACCTGTCGGTTCGTGTGCGCTGCTTTGTG
AACTGGGTCATGGAGCTGTTCGCGGAGAACCCCGAGATACAGCTCACGCCCATCGCGCTGGCGCTCGAGTCC
GGCCTCGCGCAACGAACCTGA
Translation:
MLNRTTRALSLTHDGSAYFDKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYP
RIQLRLSSSDRISNLLEDGIDCTIRGGALKDSSMIARHLCDIQMGLYASPEYLASIGGVDSPNDLSQFRRLS
WFSGRERNPFMWELESGPERFVVQSGDGMQFDEPDVAISACMAGSGICPGAPFAVAGFVRAGKLVPVLPQWH
FSAAPVHVIYPGSRHLSVRVRCFVNWVMELFAENPEIQLTPIALALESGLAQRT*
AnnotationID:6289GeneID:6288
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:06
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03466,COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM87095.1|AE013957_10 (AE013957) putative transcriptional regulators [Yersinia pestis
           KIM]
          Length = 310

 Score =  353 bits (906), Expect = 6e-97
 Identities = 160/261 (61%), Positives = 209/261 (80%), Gaps = 1/261 (0%)

>emb|CAC89485.1| (AJ414143) LysR-family regulatory protein [Yersinia pestis CO92]
          Length = 310

 Score =  353 bits (906), Expect = 6e-97
 Identities = 160/261 (61%), Positives = 209/261 (80%), Gaps = 1/261 (0%)

Structural Features:
pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.5% aligned
Score =  101 bits (253), Expect = 9e-23
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 6/211 (2%)

COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  83.8% aligned
Score = 98.9 bits (245), Expect = 6e-22
Genomic Context:
Comment:
ReferenceID:16088
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29689
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32322
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6288_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6288

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198806 gb|AAM87095.1|AE013957_10 (AE013957) putative transcriptional regulators [Yersinia pestis KIM] 317 50.78 65.93 54 905.0
198807 emb|CAC89485.1| (AJ414143) LysR-family regulatory protein [Yersinia pestis CO92] 317 50.78 65.93 54 905.0
GC ORFID: 49290How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2992017Stop: 2991205
Length: 813
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCTCAATCGTACGACCCGTGCCCTGAGCCTTACGCACGATGGCAGCGCGTACTTCGACAAATGCCAGGTC
CTGCTGCAGCAGATAGACGAACTGGAGGCCACGCTCAGGGGCGGGACGGCGACGCCCATCGGCCGGCTCAGA
GTGGACTCCCTGATCACCATCGCCCGATGGGTGATCGCTCCAAGGCTGCACGACTTCCAGGCGCGCTACCCG
AGGATCCAGCTGCGGCTGAGTAGTTCGGACCGGATCAGCAATCTGCTGGAGGACGGCATCGATTGCACGATC
CGGGGAGGTGCGCTCAAGGACTCCAGCATGATCGCCAGGCATCTTTGCGACATCCAGATGGGCTTGTATGCC
TCGCCCGAGTACCTGGCCTCCATAGGCGGTGTAGACAGTCCGAACGATCTATCGCAGTTCAGGCGGTTGAGC
TGGTTCAGCGGCAGGGAGCGCAACCCGTTCATGTGGGAGCTGGAGTCCGGCCCGGAGCGTTTCGTGGTGCAG
TCCGGCGATGGAATGCAGTTCGACGAACCCGACGTGGCTATTTCGGCCTGCATGGCGGGCAGCGGCATCTGC
CCTGGCGCCCCATTCGCGGTGGCTGGATTCGTACGCGCAGGGAAACTTGTTCCGGTACTGCCGCAATGGCAC
TTTTCTGCGGCGCCGGTGCATGTCATCTACCCGGGCTCCAGGCACCTGTCGGTTCGTGTGCGCTGCTTTGTG
AACTGGGTCATGGAGCTGTTCGCGGAGAACCCCGAGATACAGCTCACGCCCATCGCGCTGGCGCTCGAGTCC
GGCCTCGCGCAACGAACCTGA