ViewGene
Locus Name:
GeneID:
Location:

GeneID:6287
TrivialName: PA14_22600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22600
PAO1 Ortholog Locus:
Sequence Length:1056
Protein Length:351
Start: 1965826
Stop: 1966881
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL38177.1|AF446208_5 (AF446208) glycosyl transferase [Bradyrhizobium japonicum]
Identities = 167/326 (51%), Positives = 211/326 (64%), Gaps = 2/326 (0%)
Sequence:
ATGAGGCTATTGATCGTCAGCGACGCCTGGTTACCGCAAGTCAACGGAGTCGTCACCAGCCTGCTGGCCCTG
CAGCGCGAGCTGGAACTGCTGGGCCACCAGGTACGGGTGCTGTCGCCCGCCGACTTTCGCTGCCTGCCCTGT
CCCAGCTATCCGGAAATCCCCCTGGCCTGGAATCTCTGGCGCCTCGGCGGGCTGATCGAGGCCTTCGCCCCG
GATGCCGTGCACCTGGCCACCGAGGGGCCGCTCGGCTGGGCCGCGCGGCGCTGGCTGGGCAAGCGCGGCCTG
GACTTCACCTCGGCGATCCATACGCGTTTTCCCGAATACCTGCGTGACCGCTGTCCGTGGCTGCCGCTGTCC
TGGGGCTATGCCTTCCTGCGCGCCTTCCATCGGCCGAGCCGGGCGGTGCTGGTGAGCACCCCGCGCCTGCGC
GACGAGTTCTGCGCCTGGCGCTTCCAGCACCTGCGGCTGTGGCGCAAGGGCGTCGATACCGAACTGTTCCAT
CCCGCCGAGACAACCCCGGCGGAAGAGCGGCCGCCGGTGTTCCTGTATGTCGGGCGGCTGGCGACGGAAAAG
AACCTGGAGGCGTTCCTCGATCTCGAACTGCCGGGCGAAAAATGGCTGGTGGGCGACGGCCCGCAGCGGGCG
GCGCTGGAGCAGCGCTATCCACAGGCGCGTTTTCTCGGCTACCGCCATGGCCGCGCACTGGCCGACGCCTAC
CGGGCGGCCTCGGTGCTGGTGTTTCCCTCGCTGACCGATACCTATGGCCTGGTGATGCTCGAAGCCCTGGCC
TGCGGCGTGCCGGTGGCGGCCTTCGCCGTGCCGGGGCCGCTGGATGTATTGCAGCAGGGCGTGACCGGGGTC
ATGCACGAGGATCTTGGCGAAGCCTGCCGCCAGGCGCTGGCGCTGGATCGCCAGGCCTGCGGGCGCTGGGCG
CGGGAGCAGTCCTGGCGGGTTTCGGCGGAGGAGTTCCTGGCGCTGCAGGCGAGCGGTCCGCGGACTGCGCCG
GAATGGCGCGACGAACTGCCGGCGGCGCTCGACGAACTCAGAGGATGA
Translation:
MRLLIVSDAWLPQVNGVVTSLLALQRELELLGHQVRVLSPADFRCLPCPSYPEIPLAWNLWRLGGLIEAFAP
DAVHLATEGPLGWAARRWLGKRGLDFTSAIHTRFPEYLRDRCPWLPLSWGYAFLRAFHRPSRAVLVSTPRLR
DEFCAWRFQHLRLWRKGVDTELFHPAETTPAEERPPVFLYVGRLATEKNLEAFLDLELPGEKWLVGDGPQRA
ALEQRYPQARFLGYRHGRALADAYRAASVLVFPSLTDTYGLVMLEALACGVPVAAFAVPGPLDVLQQGVTGV
MHEDLGEACRQALALDRQACGRWAREQSWRVSAEEFLALQASGPRTAPEWRDELPAALDELRG*
AnnotationID:6288GeneID:6287
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 11:11:38
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl transferase
Cell Localization:()
Synonyms:grtA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0438, pfam00534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84326126|ref|ZP_00974156.1|  COG0438: Glycosyltransferase [Pseudomonas aeruginosa 2192]
Length=348

 Score =  665 bits (1717),  Expect = 0.0
 Identities = 343/348 (98%), Positives = 345/348 (99%), Gaps = 0/348 (0%)

gi|94414395|ref|ZP_01294256.1|  hypothetical protein PaerP_01003829 [Pseudomonas aeruginosa PA7]
Length=351

 Score =  599 bits (1545),  Expect = 5e-170
 Identities = 306/351 (87%), Positives = 319/351 (90%), Gaps = 0/351 (0%)

>gb|AAL38177.1|AF446208_5 (AF446208) glycosyl transferase [Bradyrhizobium japonicum]
          Length = 345

 Score =  322 bits (825), Expect = 2e-87
 Identities = 167/326 (51%), Positives = 211/326 (64%), Gaps = 2/326 (0%)

>dbj|BAC53428.1| (AP005964) glycosyl transferase [Bradyrhizobium japonicum USDA 110]
          Length = 345

 Score =  322 bits (825), Expect = 2e-87
 Identities = 167/326 (51%), Positives = 211/326 (64%), Gaps = 2/326 (0%)

>emb|CAE30696.1| (BX640437) putative glycosyl transferase [Bordetella
           bronchiseptica]
          Length = 346

 Score =  289 bits (740), Expect = 2e-77
 Identities = 160/328 (48%), Positives = 208/328 (63%), Gaps = 3/328 (0%)








 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]
CD-Length = 381 residues,  97.9% aligned
Score =  119 bits (298), Expect = 4e-28
Identities = 106/373 (28%), Positives = 151/373 (40%), Gaps = 46/373 (12%)

pfam00534, Glycos_transf_1, Glycosyl transferases group 1
CD Length: 172,  Pct. Aligned: 90.697674,  Bit Score: 93.083895,  E-value: 4e-20






   
Genomic Context:






   
Comment:


















    ReferenceID:12413




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29687




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32327




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6287_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6287
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198792
                           gb|AAQ58563.1|
                           (AE016913) probable glycosyltransferase [Chromobacterium violaceum ATCC 12472]
                           354
                           50.84
                           66.38
                           13
                           865.0
     

     
     
198793
                           emb|CAE29409.1|
                           (BX572605) putative glycosyl transferase 1 [Rhodopseudomonas palustris CGA009]
                           366
                           48.63
                           60.38
                           30
                           822.0
     

     
     
198794
                           gb|AAL38177.1|AF446208_5
                           (AF446208) glycosyl transferase [Bradyrhizobium japonicum]
                           361
                           47.09
                           59.55
                           26
                           821.0
     

     
     
198796
                           dbj|BAC53428.1|
                           (AP005964) glycosyl transferase [Bradyrhizobium japonicum USDA 110]
                           361
                           47.09
                           59.55
                           26
                           821.0
     

     
     
198804
                           emb|CAE43338.1|
                           (BX640420) putative glycosyl transferase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           358
                           46.92
                           60.61
                           19
                           743.0
     

     






      

          
GC ORFID: 49289How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2988105Stop: 2987050

          
Length: 1056


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGGCTATTGATCGTCAGCGACGCCTGGTTACCGCAAGTCAACGGAGTCGTCACCAGCCTGCTGGCCCTG 
CAGCGCGAGCTGGAACTGCTGGGCCACCAGGTACGGGTGCTGTCGCCCGCCGACTTTCGCTGCCTGCCCTGT 
CCCAGCTATCCGGAAATCCCCCTGGCCTGGAATCTCTGGCGCCTCGGCGGGCTGATCGAGGCCTTCGCCCCG 
GATGCCGTGCACCTGGCCACCGAGGGGCCGCTCGGCTGGGCCGCGCGGCGCTGGCTGGGCAAGCGCGGCCTG 
GACTTCACCTCGGCGATCCATACGCGTTTTCCCGAATACCTGCGTGACCGCTGTCCGTGGCTGCCGCTGTCC 
TGGGGCTATGCCTTCCTGCGCGCCTTCCATCGGCCGAGCCGGGCGGTGCTGGTGAGCACCCCGCGCCTGCGC 
GACGAGTTCTGCGCCTGGCGCTTCCAGCACCTGCGGCTGTGGCGCAAGGGCGTCGATACCGAACTGTTCCAT 
CCCGCCGAGACAACCCCGGCGGAAGAGCGGCCGCCGGTGTTCCTGTATGTCGGGCGGCTGGCGACGGAAAAG 
AACCTGGAGGCGTTCCTCGATCTCGAACTGCCGGGCGAAAAATGGCTGGTGGGCGACGGCCCGCAGCGGGCG 
GCGCTGGAGCAGCGCTATCCACAGGCGCGTTTTCTCGGCTACCGCCATGGCCGCGCACTGGCCGACGCCTAC 
CGGGCGGCCTCGGTGCTGGTGTTTCCCTCGCTGACCGATACCTATGGCCTGGTGATGCTCGAAGCCCTGGCC 
TGCGGCGTGCCGGTGGCGGCCTTCGCCGTGCCGGGGCCGCTGGATGTATTGCAGCAGGGCGTGACCGGGGTC 
ATGCACGAGGATCTTGGCGAAGCCTGCCGCCAGGCGCTGGCGCTGGATCGCCAGGCCTGCGGGCGCTGGGCG 
CGGGAGCAGTCCTGGCGGGTTTCGGCGGAGGAGTTCCTGGCGCTGCAGGCGAGCGGTCCGCGGACTGCGCCG 
GAATGGCGCGACGAACTGCCGGCGGCGCTCGACGAACTCAGAGGATGA